Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRKAG2 Sequence: fasta or formatted (525aa) NCBI GI: 100913192
Description:

AMP-activated protein kinase gamma2 subunit isoform c

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [328aa] AMP-activated protein kinase gamma2 subunit isoform b
alt prot [569aa] AMP-activated protein kinase gamma2 subunit isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         34           3
 C cysteine            0.6          3           1
 D aspartate           4.2         22           1
 E glutamate           6.3         33           2
 F phenylalanine       5.3         28           2
 G glycine             4.8         25           2
 H histidine           2.5         13           1
 I isoleucine          6.5         34           2
 K lysine              6.5         34           2
 L leucine             8.2         43           2
 M methionine          2.1         11           1
 N asparagine          3.0         16           2
 P proline             8.6         45           2
 Q glutamine           3.2         17           1
 R arginine            5.3         28           2
 S serine             11.4         60           3
 T threonine           5.3         28           2
 V valine              6.3         33           3
 W tryptophan          0.4          2           1
 Y tyrosine            3.0         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   AMP-activated protein kinase gamma2 subunit isoform... 
PRKAG2                1.000   AMP-activated protein kinase gamma2 subunit isoform ...
PRKAG2                0.607   AMP-activated protein kinase gamma2 subunit isoform...
PRKAG1                0.440   AMP-activated protein kinase, noncatalytic gamma-1 su...
PRKAG3                0.388   AMP-activated protein kinase, non-catalytic gamma-3 ...
PRKAG1                0.339   AMP-activated protein kinase, noncatalytic gamma-1 s...
POLR2A                0.024   DNA-directed RNA polymerase II A 
ZNF469                0.022   zinc finger protein 469 
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
ZNF768                0.020   zinc finger protein 768 
CASKIN1               0.019   CASK interacting protein 1 
PRG4                  0.019   proteoglycan 4 isoform D 
PRG4                  0.019   proteoglycan 4 isoform C 
PRG4                  0.019   proteoglycan 4 isoform B 
PRG4                  0.019   proteoglycan 4 isoform A 
RICH2                 0.019   Rho GTPase-activating protein RICH2 
SRRM1                 0.019   serine/arginine repetitive matrix 1 
MLL2                  0.018   myeloid/lymphoid or mixed-lineage leukemia 2 
RERE                  0.018   atrophin-1 like protein isoform b 
RERE                  0.018   atrophin-1 like protein isoform a 
RERE                  0.018   atrophin-1 like protein isoform a 
UMODL1                0.017   uromodulin-like 1 isoform 2 precursor 
LOC100133756          0.017   PREDICTED: hypothetical protein, partial 
SETD1B                0.016   SET domain containing 1B 
SRRM2                 0.016   splicing coactivator subunit SRm300 
LOC100293644          0.015   PREDICTED: hypothetical protein 
LOC100287563          0.015   PREDICTED: hypothetical protein 
LOC100287563          0.015   PREDICTED: hypothetical protein XP_002343733 
ATXN7                 0.015   ataxin 7 isoform b 
ATXN7                 0.015   ataxin 7 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press