Guide to the Human Genome
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Name: PRKAG3 Sequence: fasta or formatted (489aa) NCBI GI: 47132577
Description:

AMP-activated protein kinase, non-catalytic gamma-3 subunit

Referenced in:

Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         39           2
 C cysteine            1.8          9           1
 D aspartate           4.7         23           2
 E glutamate           7.6         37           2
 F phenylalanine       3.7         18           2
 G glycine             6.3         31           2
 H histidine           2.9         14           1
 I isoleucine          4.9         24           1
 K lysine              3.3         16           2
 L leucine            12.5         61           2
 M methionine          1.6          8           1
 N asparagine          1.4          7           1
 P proline             6.5         32           2
 Q glutamine           4.3         21           2
 R arginine            6.3         31           2
 S serine              8.0         39           3
 T threonine           5.7         28           2
 V valine              6.7         33           2
 W tryptophan          1.6          8           1
 Y tyrosine            2.0         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   AMP-activated protein kinase, non-catalytic gamma-3 ... 
PRKAG2                0.413   AMP-activated protein kinase gamma2 subunit isoform...
PRKAG2                0.413   AMP-activated protein kinase gamma2 subunit isoform...
PRKAG2                0.413   AMP-activated protein kinase gamma2 subunit isoform ...
PRKAG1                0.388   AMP-activated protein kinase, noncatalytic gamma-1 su...
PRKAG1                0.293   AMP-activated protein kinase, noncatalytic gamma-1 s...
NES                   0.011   nestin 
C6orf174              0.010   hypothetical protein LOC387104 
MAPT                  0.009   microtubule-associated protein tau isoform 6 
MAPT                  0.009   microtubule-associated protein tau isoform 1 
LOC100132848          0.009   PREDICTED: hypothetical protein 
MAP1A                 0.009   microtubule-associated protein 1A 
CRX                   0.009   cone-rod homeobox protein 
SCARF1                0.008   scavenger receptor class F, member 1 isoform 1 precu...
SCARF1                0.008   scavenger receptor class F, member 1 isoform 5 prec...
LOC100293644          0.008   PREDICTED: hypothetical protein 
LOC100287563          0.008   PREDICTED: hypothetical protein 
LOC100287563          0.008   PREDICTED: hypothetical protein XP_002343733 
BIN1                  0.008   bridging integrator 1 isoform 5 
C19orf29              0.008   chromosome 19 open reading frame 29 
C19orf29              0.008   chromosome 19 open reading frame 29 
MAPT                  0.008   microtubule-associated protein tau isoform 5 
MAGEB1                0.008   melanoma antigen family B, 1 
MAGEB1                0.008   melanoma antigen family B, 1 
MAGEB1                0.008   melanoma antigen family B, 1 
SCN5A                 0.007   voltage-gated sodium channel type V alpha isoform f...
ARMC5                 0.007   armadillo repeat containing 5 isoform b 
ARMC5                 0.007   armadillo repeat containing 5 isoform a 
BIN1                  0.007   bridging integrator 1 isoform 2 
BIN1                  0.007   bridging integrator 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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