Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PRKAG1 Sequence: fasta or formatted (247aa) NCBI GI: 47132575
Description:

AMP-activated protein kinase, noncatalytic gamma-1 subunit isoform 2

Referenced in:

Additional Serine / Threonine Protein Kinases

Other entries for this name:
alt prot [331aa] AMP-activated protein kinase, noncatalytic gamma-1 subunit isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         12           2
 C cysteine            0.8          2           1
 D aspartate           4.5         11           1
 E glutamate           7.7         19           2
 F phenylalanine       4.0         10           1
 G glycine             3.2          8           2
 H histidine           3.6          9           1
 I isoleucine          8.5         21           2
 K lysine              6.9         17           2
 L leucine            12.1         30           1
 M methionine          1.2          3           1
 N asparagine          4.0         10           2
 P proline             3.6          9           1
 Q glutamine           2.4          6           1
 R arginine            4.5         11           1
 S serine              6.1         15           2
 T threonine           6.1         15           3
 V valine             10.9         27           3
 W tryptophan          0.4          1           1
 Y tyrosine            4.5         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   AMP-activated protein kinase, noncatalytic gamma-1 s... 
PRKAG1                1.000   AMP-activated protein kinase, noncatalytic gamma-1 su...
PRKAG2                0.748   AMP-activated protein kinase gamma2 subunit isoform...
PRKAG2                0.748   AMP-activated protein kinase gamma2 subunit isoform...
PRKAG2                0.748   AMP-activated protein kinase gamma2 subunit isoform ...
PRKAG3                0.607   AMP-activated protein kinase, non-catalytic gamma-3 ...
AGTPBP1               0.011   ATP/GTP binding protein 1 
SLFN11                0.009   schlafen family member 11 
SLFN11                0.009   schlafen family member 11 
SLFN11                0.009   schlafen family member 11 
SLFN11                0.009   schlafen family member 11 
SLFN11                0.009   schlafen family member 11 
SLFN13                0.009   schlafen family member 13 
SLFN5                 0.007   schlafen family member 5 
GALT                  0.007   galactose-1-phosphate uridylyltransferase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press