Guide to the Human Genome
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Name: CALU Sequence: fasta or formatted (315aa) NCBI GI: 4502551
Description:

calumenin isoform a precursor

Referenced in:

Calmodulin and Calcium

Other entries for this name:
alt prot [315aa] calumenin isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         17           1
 C cysteine            0.6          2           1
 D aspartate          14.6         46           2
 E glutamate          11.4         36           2
 F phenylalanine       5.4         17           1
 G glycine             5.1         16           1
 H histidine           3.2         10           2
 I isoleucine          3.5         11           1
 K lysine              9.2         29           2
 L leucine             6.7         21           1
 M methionine          2.9          9           2
 N asparagine          2.5          8           1
 P proline             2.5          8           1
 Q glutamine           3.5         11           1
 R arginine            4.1         13           2
 S serine              3.5         11           1
 T threonine           4.4         14           1
 V valine              5.4         17           2
 W tryptophan          1.9          6           1
 Y tyrosine            4.1         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calumenin isoform a precursor 
CALU                  0.929   calumenin isoform b precursor 
RCN1                  0.596   reticulocalbin 1 precursor 
RCN3                  0.473   reticulocalbin 3, EF-hand calcium binding domain [Ho...
RCN2                  0.308   reticulocalbin 2 precursor 
SDF4                  0.150   stromal cell derived factor 4 isoform 2 precursor [H...
SDF4                  0.106   stromal cell derived factor 4 isoform 1 precursor [Ho...
CALML3                0.035   calmodulin-like 3 
TNNC2                 0.032   fast skeletal muscle troponin C 
CALM3                 0.032   calmodulin 3 
CALM2                 0.032   calmodulin 2 
CALM1                 0.032   calmodulin 1 
TNNC1                 0.032   troponin C, slow 
PLCD1                 0.025   phospholipase C, delta 1 isoform 1 
GUCA1C                0.024   guanylate cyclase activator 1C 
CAPSL                 0.022   calcyphosine-like 
CAPSL                 0.022   calcyphosine-like 
CETN3                 0.022   centrin 3 
SPTAN1                0.019   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.019   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
PLCD1                 0.019   phospholipase C, delta 1 isoform 2 
CABP2                 0.019   calcium binding protein 2 isoform 2 
CABP2                 0.019   calcium binding protein 2 isoform 1 
LOC283685             0.019   PREDICTED: golgi autoantigen, golgin subfamily a-li...
ACTN2                 0.017   actinin, alpha 2 
FKBP7                 0.017   FK506 binding protein 7 isoform a precursor 
CABP1                 0.016   calcium binding protein 1 isoform 1 
PLS1                  0.016   plastin 1 
PLS1                  0.016   plastin 1 
FKBP7                 0.016   FK506 binding protein 7 isoform b precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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