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Search of human proteins with 18087845
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|18087845 cell division cycle associated 5 [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|18087845 cell division cycle associated 5 [Homo sapiens] 503 e-143
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 42 4e-04
gi|83776598 virus-induced signaling adapter [Homo sapiens] 38 0.010
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.021
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 37 0.021
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 37 0.021
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 37 0.021
gi|118402590 myosin XV [Homo sapiens] 35 0.048
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 35 0.048
gi|73808090 zinc finger protein 207 isoform b [Homo sapiens] 35 0.048
gi|224994173 roundabout 1 isoform d [Homo sapiens] 35 0.081
gi|224994171 roundabout 1 isoform c [Homo sapiens] 35 0.081
gi|19743806 roundabout 1 isoform b [Homo sapiens] 35 0.081
gi|4506569 roundabout 1 isoform a [Homo sapiens] 35 0.081
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.081
gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo ... 34 0.11
gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo ... 34 0.11
gi|217330574 EH domain binding protein 1 isoform 3 [Homo sapiens] 33 0.18
gi|217330572 EH domain binding protein 1 isoform 3 [Homo sapiens] 33 0.18
gi|217330570 EH domain binding protein 1 isoform 2 [Homo sapiens] 33 0.18
gi|217330568 EH domain binding protein 1 isoform 1 [Homo sapiens] 33 0.18
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 33 0.24
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 33 0.24
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 33 0.24
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 33 0.24
gi|16757970 niban protein isoform 2 [Homo sapiens] 33 0.24
gi|113204609 zinc finger protein 750 [Homo sapiens] 33 0.31
gi|212275945 male-specific lethal 3-like 1 isoform a [Homo sapiens] 33 0.31
gi|17975761 male-specific lethal 3-like 1 isoform c [Homo sapiens] 33 0.31
gi|17975759 male-specific lethal 3-like 1 isoform b [Homo sapiens] 33 0.31
>gi|18087845 cell division cycle associated 5 [Homo sapiens]
Length = 252
Score = 503 bits (1295), Expect = e-143
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MSGRRTRSGGAAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVL 60
MSGRRTRSGGAAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVL
Sbjct: 1 MSGRRTRSGGAAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVL 60
Query: 61 KRIVAHAVEVPAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNP 120
KRIVAHAVEVPAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNP
Sbjct: 61 KRIVAHAVEVPAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNP 120
Query: 121 EAESSSKEGELDARDLEMSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGV 180
EAESSSKEGELDARDLEMSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGV
Sbjct: 121 EAESSSKEGELDARDLEMSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGV 180
Query: 181 SPVVCSKLTEVPRVCAKPWAPDMTLPGISPPPEKQKRKKKKMPEILKTELDEWAAAMNAE 240
SPVVCSKLTEVPRVCAKPWAPDMTLPGISPPPEKQKRKKKKMPEILKTELDEWAAAMNAE
Sbjct: 181 SPVVCSKLTEVPRVCAKPWAPDMTLPGISPPPEKQKRKKKKMPEILKTELDEWAAAMNAE 240
Query: 241 FEAAEQFDLLVE 252
FEAAEQFDLLVE
Sbjct: 241 FEAAEQFDLLVE 252
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 42.4 bits (98), Expect = 4e-04
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 13 QRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPA 72
++ P++PSP + + RKS S P K + + +K I +R
Sbjct: 810 EKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARER---------- 859
Query: 73 VQSPRRSPRISFFLE---KENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKEG 129
QS RSP+ E E+ P RE ++E+ S P S+P ++S +E
Sbjct: 860 RQSQSRSPKRDTTRESRRSESLSPRRETSREN---KRSQPRVKDSSPGEKSRSQSRERES 916
Query: 130 ELDARDLEMSKKVRR-SYSRLETLGSASTSTPGRRSCFG 167
+ D + E ++ R+ S SR + + T + S FG
Sbjct: 917 DRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSSFG 955
Score = 28.5 bits (62), Expect = 5.8
Identities = 46/195 (23%), Positives = 68/195 (34%), Gaps = 54/195 (27%)
Query: 4 RRTRSGGAAQRSGPRAPSPTKPLRRSQRKS----------------------GSELPSI- 40
++ SG + R R P+ T P RRS R + G+ PS+
Sbjct: 298 KKQTSGTSNTRGSRRKPAMTTPTRRSTRNTRAETASQSQRSPISDNSGCDAPGNSNPSLS 357
Query: 41 LPEIW---------PKTPSAAAVRKPIVLKRIVAHAVEVP-------AVQSPRRSPRISF 84
+P PK S RKP +LK+ + +V P +V S
Sbjct: 358 VPSSAESEKQTRQAPKRKSVRRGRKPPLLKKKLRSSVAAPEKSSSNDSVDEETAESDTSP 417
Query: 85 FLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKEGELDARDLEMSKKVRR 144
LEKE++P S T V N A E +E S+K
Sbjct: 418 VLEKEHQP-----------DVDSSNICTVQTHVENQSANCLKSCNE----QIEESEKHTA 462
Query: 145 SYSRLETLGSASTST 159
+Y E +GS+S+ +
Sbjct: 463 NYDTEERVGSSSSES 477
>gi|83776598 virus-induced signaling adapter [Homo sapiens]
Length = 540
Score = 37.7 bits (86), Expect = 0.010
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Query: 94 GRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKEGELDARDLEMSKKVRRSYSRLETLG 153
G + +L TH+ AT + TP P + S S + L S+ + S + T
Sbjct: 194 GHQEQDTELGSTHTAGATSSLTPSRGPVSPSVSFQ-PLARSTPRASRLPGPTGSVVSTGT 252
Query: 154 SASTSTPGRRSCFGFEGLLGAEDLSGVSPVVCSKLTEVPRVCAKPWAPDMTLP 206
S S+S+PG S EG GAE P++CS E P P +P
Sbjct: 253 SFSSSSPGLASAGAAEGKQGAES-DQAEPIICSSGAEAPANSLPSKVPTTLMP 304
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 36.6 bits (83), Expect = 0.021
Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 13/227 (5%)
Query: 8 SGGAAQRSGPRAPSPTKPLRRSQRKSGSE--LPSILPEIWPKTPSAAAVRKPIVLKRIVA 65
+G SGP +P+ + R R +G+E LP P P+ P+ RK +
Sbjct: 158 AGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGP-RKSV--SSASE 214
Query: 66 HAVEVPAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESS 125
H+ P+ + RR P L++ P R L+ + + P++ P A S
Sbjct: 215 HSTTEPS-PAARRRPSAGGGLQR---PASRSLSSSATPLSSPARSGPSARGTPRAPAHPS 270
Query: 126 --SKEGELDARDLEMSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGVSPV 183
+G R +++ + + L L S+ +TP + + S +
Sbjct: 271 QPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSSL 330
Query: 184 VCSKLTEVPRVCAKPWAPD--MTLPGISPPPEKQKRKKKKMPEILKT 228
C T +P P AP TLP P Q P + T
Sbjct: 331 TCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQAT 377
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.021
Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 30/143 (20%)
Query: 5 RTRSGGAAQRSGPRAPSPTKPLRRSQRKSGSELPSILP--EIWPKTPSAAAV---RKPIV 59
RT SGGAA P P P R++R+ S ++ P WP P A KP +
Sbjct: 137 RTPSGGAA----PCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSKPAL 192
Query: 60 L------KRIVAHAVEVPAVQSPRRSPRISFFLEKENEPPG------------RELTKED 101
+R A AV A Q P R+P +E+ G R L +
Sbjct: 193 AARQQPQRRAWAAAV---ATQCPHRAPTQQHRAGRESGSTGAINQGRRRKDAARRLPNRN 249
Query: 102 LFKTHSVPATPTSTPVPNPEAES 124
L + S+P S+P+P A S
Sbjct: 250 LLRDLSLPRGAQSSPLPGARASS 272
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.021
Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 30/143 (20%)
Query: 5 RTRSGGAAQRSGPRAPSPTKPLRRSQRKSGSELPSILP--EIWPKTPSAAAV---RKPIV 59
RT SGGAA P P P R++R+ S ++ P WP P A KP +
Sbjct: 137 RTPSGGAA----PCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSKPAL 192
Query: 60 L------KRIVAHAVEVPAVQSPRRSPRISFFLEKENEPPG------------RELTKED 101
+R A AV A Q P R+P +E+ G R L +
Sbjct: 193 AARQQPQRRAWAAAV---ATQCPHRAPTQQHRAGRESGSTGAINQGRRRKDAARRLPNRN 249
Query: 102 LFKTHSVPATPTSTPVPNPEAES 124
L + S+P S+P+P A S
Sbjct: 250 LLRDLSLPRGAQSSPLPGARASS 272
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 36.6 bits (83), Expect = 0.021
Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 30/143 (20%)
Query: 5 RTRSGGAAQRSGPRAPSPTKPLRRSQRKSGSELPSILP--EIWPKTPSAAAV---RKPIV 59
RT SGGAA P P P R++R+ S ++ P WP P A KP +
Sbjct: 137 RTPSGGAA----PCVPDEPAPAARTRRRDPSLRRTLAPCAPAWPAPPPCPAPPSRSKPAL 192
Query: 60 L------KRIVAHAVEVPAVQSPRRSPRISFFLEKENEPPG------------RELTKED 101
+R A AV A Q P R+P +E+ G R L +
Sbjct: 193 AARQQPQRRAWAAAV---ATQCPHRAPTQQHRAGRESGSTGAINQGRRRKDAARRLPNRN 249
Query: 102 LFKTHSVPATPTSTPVPNPEAES 124
L + S+P S+P+P A S
Sbjct: 250 LLRDLSLPRGAQSSPLPGARASS 272
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 35.4 bits (80), Expect = 0.048
Identities = 34/115 (29%), Positives = 43/115 (37%), Gaps = 13/115 (11%)
Query: 10 GAAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVE 69
G+ PR PSP L S R+S LPS LP W + R V V
Sbjct: 837 GSPLPGSPRPPSPPLGLCHSPRRSSLNLPSRLPHTWRRLSEPPT--------RAVKPQVR 888
Query: 70 VPAVQSPR----RSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNP 120
+P + PR R+P +E E T L + V PT P P+P
Sbjct: 889 LPFHRPPRAGAWRAPLEHRESPREPEDSETPWTVPPLAPSWDVDMPPTQRP-PSP 942
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.4 bits (80), Expect = 0.048
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 32/164 (19%)
Query: 4 RRTRSGGAAQRSGPRAPSPTK---PLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVL 60
+R RS +R R+PSP + P+RR +++S S P + ++PS
Sbjct: 165 KRERSRSPRRRKS-RSPSPRRRSSPVRRERKRSHSRSPRHRTK--SRSPS---------- 211
Query: 61 KRIVAHAVEVPAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNP 120
PA + ++P + K EP +E T T + P P+P P
Sbjct: 212 ----------PAPEKKEKTPELPEPSVKVKEPSVQEAT-----STSDILKVPKPEPIPEP 256
Query: 121 EAESSSKEGELDARDLEMSKKVR-RSYSRLETLGSASTSTPGRR 163
+ S K + + + + R RS SR T + + T RR
Sbjct: 257 KEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRR 300
Score = 31.2 bits (69), Expect = 0.90
Identities = 43/164 (26%), Positives = 63/164 (38%), Gaps = 25/164 (15%)
Query: 1 MSGRRTRSGGAAQRSGPRAPSP--TKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPI 58
+SG + S + RS P+ P + P R+++R S PS P PS A P
Sbjct: 355 LSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLS----PSASPPRRRHRPSPPATPPPK 410
Query: 59 VLKRIVAHAVEVPAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVP 118
H+ P + R R+S PGR K K +P+ P P
Sbjct: 411 T-----RHS-PTPQQSNRTRKSRVSV-------SPGRTSGKVTKHKGTEKRESPSPAPKP 457
Query: 119 NPEAESSSKE---GELDARDLEMSKKVRRSYSRLETLGSASTST 159
S S+E G++ A D S + RR Y R S+ + +
Sbjct: 458 RKVELSESEEDKGGKMAAAD---SVQQRRQYRRQNQQSSSDSGS 498
Score = 30.8 bits (68), Expect = 1.2
Identities = 65/272 (23%), Positives = 87/272 (31%), Gaps = 54/272 (19%)
Query: 3 GRRTRSGGAAQRSGPRAPSPTKPLRR-------------------------------SQR 31
GRR RS R+PSP P RR +R
Sbjct: 544 GRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRR 603
Query: 32 KSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPAVQSP---RRSPRISFFLEK 88
S S P P P A P KR V+H+ SP RRSP +S K
Sbjct: 604 YSPSPPPKRRTASPPPPPKRRASPSP-PPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRK 662
Query: 89 ENEP--PGRELTKEDLFKTHS------VPATPTSTPVPNPEAESSSKEGELDARDLEMSK 140
+ P RE K HS P T +S P A SS + + + +
Sbjct: 663 GSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIR 722
Query: 141 KVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGVSPVVCSKLTE---------- 190
+V R+ + +AS S R + G+ + + P +
Sbjct: 723 RVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSP 782
Query: 191 -VPRVCAKPWAPDMTLPGISPPPEKQKRKKKK 221
VP AK P + P S K+KKKK
Sbjct: 783 AVPVKKAKSPTPSPSPPRNSDQEGGGKKKKKK 814
>gi|73808090 zinc finger protein 207 isoform b [Homo sapiens]
Length = 463
Score = 35.4 bits (80), Expect = 0.048
Identities = 40/144 (27%), Positives = 51/144 (35%), Gaps = 3/144 (2%)
Query: 16 GPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPAVQS 75
G P P P G P P I P T A AV P +L R A VPA Q
Sbjct: 206 GMMPPGPGIPPLMPGMPPGMPPPVPRPGIPPMT-QAQAVSAPGILNRPPAPTATVPAPQP 264
Query: 76 PRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKEGELDARD 135
P P + + G T D +S PAT T P P A + S +
Sbjct: 265 PVTKPLFPSAGQAQAAVQGPVGT--DFKPLNSTPATTTEPPKPTFPAYTQSTASTTSTTN 322
Query: 136 LEMSKKVRRSYSRLETLGSASTST 159
+K S+ TL + S ++
Sbjct: 323 STAAKPAASITSKPATLTTTSATS 346
>gi|224994173 roundabout 1 isoform d [Homo sapiens]
Length = 1551
Score = 34.7 bits (78), Expect = 0.081
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAV------RKPIVLK-RIVAHAVE 69
P P P ++ +S ++L + P + PK PS A RK K R V +
Sbjct: 1381 PPPPVPPPAIKSPTAQSKTQL-EVRPVVVPKLPSMDARTDRSSDRKGSSYKGREVLDGRQ 1439
Query: 70 VPAVQSPRRSPRISFFLEKENEPPGRELTKEDL--FKTHSV---------PATPTSTPVP 118
V +++ PR + + + + G + K DL KTH + P PTS
Sbjct: 1440 VVDMRTNPGDPREAQEQQNDGKGRGNKAAKRDLPPAKTHLIQEDILPYCRPTFPTSNNPR 1499
Query: 119 NPEAESSSKEGELDARDLEMSKKVRRSYSRLETLG 153
+P + SS +R E + RR+ + ++ LG
Sbjct: 1500 DPSSSSSMSSRGSGSRQREQANVGRRNIAEMQVLG 1534
>gi|224994171 roundabout 1 isoform c [Homo sapiens]
Length = 1606
Score = 34.7 bits (78), Expect = 0.081
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAV------RKPIVLK-RIVAHAVE 69
P P P ++ +S ++L + P + PK PS A RK K R V +
Sbjct: 1436 PPPPVPPPAIKSPTAQSKTQL-EVRPVVVPKLPSMDARTDRSSDRKGSSYKGREVLDGRQ 1494
Query: 70 VPAVQSPRRSPRISFFLEKENEPPGRELTKEDL--FKTHSV---------PATPTSTPVP 118
V +++ PR + + + + G + K DL KTH + P PTS
Sbjct: 1495 VVDMRTNPGDPREAQEQQNDGKGRGNKAAKRDLPPAKTHLIQEDILPYCRPTFPTSNNPR 1554
Query: 119 NPEAESSSKEGELDARDLEMSKKVRRSYSRLETLG 153
+P + SS +R E + RR+ + ++ LG
Sbjct: 1555 DPSSSSSMSSRGSGSRQREQANVGRRNIAEMQVLG 1589
>gi|19743806 roundabout 1 isoform b [Homo sapiens]
Length = 1612
Score = 34.7 bits (78), Expect = 0.081
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAV------RKPIVLK-RIVAHAVE 69
P P P ++ +S ++L + P + PK PS A RK K R V +
Sbjct: 1442 PPPPVPPPAIKSPTAQSKTQL-EVRPVVVPKLPSMDARTDRSSDRKGSSYKGREVLDGRQ 1500
Query: 70 VPAVQSPRRSPRISFFLEKENEPPGRELTKEDL--FKTHSV---------PATPTSTPVP 118
V +++ PR + + + + G + K DL KTH + P PTS
Sbjct: 1501 VVDMRTNPGDPREAQEQQNDGKGRGNKAAKRDLPPAKTHLIQEDILPYCRPTFPTSNNPR 1560
Query: 119 NPEAESSSKEGELDARDLEMSKKVRRSYSRLETLG 153
+P + SS +R E + RR+ + ++ LG
Sbjct: 1561 DPSSSSSMSSRGSGSRQREQANVGRRNIAEMQVLG 1595
>gi|4506569 roundabout 1 isoform a [Homo sapiens]
Length = 1651
Score = 34.7 bits (78), Expect = 0.081
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAV------RKPIVLK-RIVAHAVE 69
P P P ++ +S ++L + P + PK PS A RK K R V +
Sbjct: 1481 PPPPVPPPAIKSPTAQSKTQL-EVRPVVVPKLPSMDARTDRSSDRKGSSYKGREVLDGRQ 1539
Query: 70 VPAVQSPRRSPRISFFLEKENEPPGRELTKEDL--FKTHSV---------PATPTSTPVP 118
V +++ PR + + + + G + K DL KTH + P PTS
Sbjct: 1540 VVDMRTNPGDPREAQEQQNDGKGRGNKAAKRDLPPAKTHLIQEDILPYCRPTFPTSNNPR 1599
Query: 119 NPEAESSSKEGELDARDLEMSKKVRRSYSRLETLG 153
+P + SS +R E + RR+ + ++ LG
Sbjct: 1600 DPSSSSSMSSRGSGSRQREQANVGRRNIAEMQVLG 1634
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.7 bits (78), Expect = 0.081
Identities = 34/121 (28%), Positives = 46/121 (38%), Gaps = 6/121 (4%)
Query: 12 AQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVP 71
+ + P P+ T P + S P+ P TP A + P + I + EVP
Sbjct: 1460 SSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPATP--APMGAPTLPAVIPSSPKEVP 1517
Query: 72 AVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTP-VPNPE---AESSSK 127
A S RR P + P KE L +P TP +P P+ A SSK
Sbjct: 1518 ATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKEAPATPSSK 1577
Query: 128 E 128
E
Sbjct: 1578 E 1578
Score = 30.4 bits (67), Expect = 1.5
Identities = 48/205 (23%), Positives = 68/205 (33%), Gaps = 37/205 (18%)
Query: 12 AQRSGPRAPS----PTKPLRRSQRKSGSELPSILPEIWPKTPSAAA-VRKPIVLKRIVAH 66
+ + GP PS PT P K G + P+ P PS P V+
Sbjct: 1355 SSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPL---- 1410
Query: 67 AVEVPAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSS 126
SP+++P E P +LT + A TS P P SS
Sbjct: 1411 --------SPKKAPATPVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSK 1462
Query: 127 KEGELDA------RDLEMSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGV 180
+ L A ++ K+V S S + + +T P +GA L V
Sbjct: 1463 GDPTLPAVTPPSPKEPPAPKQVATSSSPKK---APATPAP-----------MGAPTLPAV 1508
Query: 181 SPVVCSKLTEVPRVCAKPWAPDMTL 205
P ++ P P AP TL
Sbjct: 1509 IPSSPKEVPATPSSRRDPIAPTATL 1533
>gi|239748173 PREDICTED: similar to roundabout 1 isoform 1 [Homo
sapiens]
Length = 1562
Score = 34.3 bits (77), Expect = 0.11
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAV------RKPIVLK-RIVAHAVE 69
P P P ++ +S ++L + P + PK PS A RK K R V +
Sbjct: 1392 PPPPVPPPAIKSPTAQSKTQL-EVRPVVVPKLPSMDARTDRSSDRKGSSYKGREVLGGRQ 1450
Query: 70 VPAVQSPRRSPRISFFLEKENEPPGRELTKEDL--FKTHSV---------PATPTSTPVP 118
V +++ PR + + + + G + K DL KTH + P PTS
Sbjct: 1451 VVDMRTNPGDPREAQEQQNDGKGRGNKAAKRDLPPAKTHLIQEDILPYCRPTFPTSNNPR 1510
Query: 119 NPEAESSSKEGELDARDLEMSKKVRRSYSRLETLG 153
+P + SS +R E + RR+ + ++ LG
Sbjct: 1511 DPSSSSSMSSRGSGSRQREQANVGRRNIAEMQVLG 1545
>gi|239748171 PREDICTED: similar to roundabout 1 isoform 2 [Homo
sapiens]
Length = 1615
Score = 34.3 bits (77), Expect = 0.11
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAV------RKPIVLK-RIVAHAVE 69
P P P ++ +S ++L + P + PK PS A RK K R V +
Sbjct: 1445 PPPPVPPPAIKSPTAQSKTQL-EVRPVVVPKLPSMDARTDRSSDRKGSSYKGREVLGGRQ 1503
Query: 70 VPAVQSPRRSPRISFFLEKENEPPGRELTKEDL--FKTHSV---------PATPTSTPVP 118
V +++ PR + + + + G + K DL KTH + P PTS
Sbjct: 1504 VVDMRTNPGDPREAQEQQNDGKGRGNKAAKRDLPPAKTHLIQEDILPYCRPTFPTSNNPR 1563
Query: 119 NPEAESSSKEGELDARDLEMSKKVRRSYSRLETLG 153
+P + SS +R E + RR+ + ++ LG
Sbjct: 1564 DPSSSSSMSSRGSGSRQREQANVGRRNIAEMQVLG 1598
>gi|217330574 EH domain binding protein 1 isoform 3 [Homo sapiens]
Length = 1160
Score = 33.5 bits (75), Expect = 0.18
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 10/151 (6%)
Query: 18 RAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPA--VQS 75
R S T+P ++SQ+ SG S P I T S A + + A +E+ V
Sbjct: 611 RTKSDTEP-QKSQQSSGRTSGSDDPGICSNTDSTQAQVLLGKKRLLKAETLELSDLYVSD 669
Query: 76 PRRSPRISFFLEKENEPP------GRELTKEDLFKTHSVPA-TPTSTPVPNPEAESSSKE 128
++ F E+ +E G L KE L + S+ + +P+ +SK
Sbjct: 670 KKKDMSPPFICEETDEQKLQTLDIGSNLEKEKLENSRSLECRSDPESPIKKTSLSPTSKL 729
Query: 129 GELDARDLEMSKKVRRSYSRLETLGSASTST 159
G +RDL+++KK S + E+ A +T
Sbjct: 730 GYSYSRDLDLAKKKHASLRQTESDPDADRTT 760
>gi|217330572 EH domain binding protein 1 isoform 3 [Homo sapiens]
Length = 1160
Score = 33.5 bits (75), Expect = 0.18
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 10/151 (6%)
Query: 18 RAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPA--VQS 75
R S T+P ++SQ+ SG S P I T S A + + A +E+ V
Sbjct: 611 RTKSDTEP-QKSQQSSGRTSGSDDPGICSNTDSTQAQVLLGKKRLLKAETLELSDLYVSD 669
Query: 76 PRRSPRISFFLEKENEPP------GRELTKEDLFKTHSVPA-TPTSTPVPNPEAESSSKE 128
++ F E+ +E G L KE L + S+ + +P+ +SK
Sbjct: 670 KKKDMSPPFICEETDEQKLQTLDIGSNLEKEKLENSRSLECRSDPESPIKKTSLSPTSKL 729
Query: 129 GELDARDLEMSKKVRRSYSRLETLGSASTST 159
G +RDL+++KK S + E+ A +T
Sbjct: 730 GYSYSRDLDLAKKKHASLRQTESDPDADRTT 760
>gi|217330570 EH domain binding protein 1 isoform 2 [Homo sapiens]
Length = 1196
Score = 33.5 bits (75), Expect = 0.18
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 10/151 (6%)
Query: 18 RAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPA--VQS 75
R S T+P ++SQ+ SG S P I T S A + + A +E+ V
Sbjct: 611 RTKSDTEP-QKSQQSSGRTSGSDDPGICSNTDSTQAQVLLGKKRLLKAETLELSDLYVSD 669
Query: 76 PRRSPRISFFLEKENEPP------GRELTKEDLFKTHSVPA-TPTSTPVPNPEAESSSKE 128
++ F E+ +E G L KE L + S+ + +P+ +SK
Sbjct: 670 KKKDMSPPFICEETDEQKLQTLDIGSNLEKEKLENSRSLECRSDPESPIKKTSLSPTSKL 729
Query: 129 GELDARDLEMSKKVRRSYSRLETLGSASTST 159
G +RDL+++KK S + E+ A +T
Sbjct: 730 GYSYSRDLDLAKKKHASLRQTESDPDADRTT 760
>gi|217330568 EH domain binding protein 1 isoform 1 [Homo sapiens]
Length = 1231
Score = 33.5 bits (75), Expect = 0.18
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 10/151 (6%)
Query: 18 RAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPA--VQS 75
R S T+P ++SQ+ SG S P I T S A + + A +E+ V
Sbjct: 646 RTKSDTEP-QKSQQSSGRTSGSDDPGICSNTDSTQAQVLLGKKRLLKAETLELSDLYVSD 704
Query: 76 PRRSPRISFFLEKENEPP------GRELTKEDLFKTHSVPA-TPTSTPVPNPEAESSSKE 128
++ F E+ +E G L KE L + S+ + +P+ +SK
Sbjct: 705 KKKDMSPPFICEETDEQKLQTLDIGSNLEKEKLENSRSLECRSDPESPIKKTSLSPTSKL 764
Query: 129 GELDARDLEMSKKVRRSYSRLETLGSASTST 159
G +RDL+++KK S + E+ A +T
Sbjct: 765 GYSYSRDLDLAKKKHASLRQTESDPDADRTT 795
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 33.1 bits (74), Expect = 0.24
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 14/136 (10%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRK--PIVLKRIVAHAVEVPAVQ 74
P+ P+PT P + P+ L E P TP A ++ P K + + PA
Sbjct: 628 PKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPT 687
Query: 75 SPRRSPRISFFLEKENEPPGRE----LTKEDLFKTHSVPATPTSTPVP-----NPEAESS 125
+P+ + + KE P + T E T S +TPT+T P +P+ +
Sbjct: 688 TPKETAPTT---PKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTP 744
Query: 126 SKEGELDARDLEMSKK 141
E + LE S K
Sbjct: 745 ELSAEPTPKALENSPK 760
Score = 31.6 bits (70), Expect = 0.69
Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPAVQSP 76
P P+PT P + P+ E P TP AAA P K + PA +P
Sbjct: 503 PEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP---KEPAPTTPKEPAPTTP 559
Query: 77 RRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKE 128
+ + KE P + T K P TP P P A +++KE
Sbjct: 560 KEPAPTT---PKETAPTTPKGTAPTTLK-EPAPTTP-KKPAPKELAPTTTKE 606
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVR----KPIVLKRIVAHAVEVPA 72
P+ P+PT P + + P+ E P TP A P K A + PA
Sbjct: 298 PKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPA 357
Query: 73 VQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPA------TPTSTPVPNPEAESSS 126
+P+ + + P TKE T PA PT+T P P S+
Sbjct: 358 PTTPKEPAPTT------PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSA 411
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/120 (25%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 11 AAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEV 70
AA + P+ P+PT P + P+ E P TP A P LK
Sbjct: 537 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTA---PTTLKE-------- 585
Query: 71 PAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATP--TSTPVPNPEAESSSKE 128
PA +P++ EP K P TP T+ P A ++ KE
Sbjct: 586 PAPTTPKKPAPKELAPTTTKEPTSTTCDK-------PAPTTPKGTAPTTPKEPAPTTPKE 638
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 33.1 bits (74), Expect = 0.24
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 14/136 (10%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRK--PIVLKRIVAHAVEVPAVQ 74
P+ P+PT P + P+ L E P TP A ++ P K + + PA
Sbjct: 669 PKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPT 728
Query: 75 SPRRSPRISFFLEKENEPPGRE----LTKEDLFKTHSVPATPTSTPVP-----NPEAESS 125
+P+ + + KE P + T E T S +TPT+T P +P+ +
Sbjct: 729 TPKETAPTT---PKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTP 785
Query: 126 SKEGELDARDLEMSKK 141
E + LE S K
Sbjct: 786 ELSAEPTPKALENSPK 801
Score = 31.6 bits (70), Expect = 0.69
Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPAVQSP 76
P P+PT P + P+ E P TP AAA P K + PA +P
Sbjct: 544 PEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP---KEPAPTTPKEPAPTTP 600
Query: 77 RRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKE 128
+ + KE P + T K P TP P P A +++KE
Sbjct: 601 KEPAPTT---PKETAPTTPKGTAPTTLK-EPAPTTP-KKPAPKELAPTTTKE 647
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVR----KPIVLKRIVAHAVEVPA 72
P+ P+PT P + + P+ E P TP A P K A + PA
Sbjct: 339 PKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPA 398
Query: 73 VQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPA------TPTSTPVPNPEAESSS 126
+P+ + + P TKE T PA PT+T P P S+
Sbjct: 399 PTTPKEPAPTT------PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSA 452
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/120 (25%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 11 AAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEV 70
AA + P+ P+PT P + P+ E P TP A P LK
Sbjct: 578 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTA---PTTLKE-------- 626
Query: 71 PAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATP--TSTPVPNPEAESSSKE 128
PA +P++ EP K P TP T+ P A ++ KE
Sbjct: 627 PAPTTPKKPAPKELAPTTTKEPTSTTCDK-------PAPTTPKGTAPTTPKEPAPTTPKE 679
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 33.1 bits (74), Expect = 0.24
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 14/136 (10%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRK--PIVLKRIVAHAVEVPAVQ 74
P+ P+PT P + P+ L E P TP A ++ P K + + PA
Sbjct: 721 PKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPT 780
Query: 75 SPRRSPRISFFLEKENEPPGRE----LTKEDLFKTHSVPATPTSTPVP-----NPEAESS 125
+P+ + + KE P + T E T S +TPT+T P +P+ +
Sbjct: 781 TPKETAPTT---PKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTP 837
Query: 126 SKEGELDARDLEMSKK 141
E + LE S K
Sbjct: 838 ELSAEPTPKALENSPK 853
Score = 31.6 bits (70), Expect = 0.69
Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPAVQSP 76
P P+PT P + P+ E P TP AAA P K + PA +P
Sbjct: 596 PEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP---KEPAPTTPKEPAPTTP 652
Query: 77 RRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKE 128
+ + KE P + T K P TP P P A +++KE
Sbjct: 653 KEPAPTT---PKETAPTTPKGTAPTTLK-EPAPTTP-KKPAPKELAPTTTKE 699
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVR----KPIVLKRIVAHAVEVPA 72
P+ P+PT P + + P+ E P TP A P K A + PA
Sbjct: 391 PKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPA 450
Query: 73 VQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPA------TPTSTPVPNPEAESSS 126
+P+ + + P TKE T PA PT+T P P S+
Sbjct: 451 PTTPKEPAPTT------PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSA 504
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/120 (25%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 11 AAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEV 70
AA + P+ P+PT P + P+ E P TP A P LK
Sbjct: 630 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTA---PTTLKE-------- 678
Query: 71 PAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATP--TSTPVPNPEAESSSKE 128
PA +P++ EP K P TP T+ P A ++ KE
Sbjct: 679 PAPTTPKKPAPKELAPTTTKEPTSTTCDK-------PAPTTPKGTAPTTPKEPAPTTPKE 731
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 33.1 bits (74), Expect = 0.24
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 14/136 (10%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRK--PIVLKRIVAHAVEVPAVQ 74
P+ P+PT P + P+ L E P TP A ++ P K + + PA
Sbjct: 762 PKEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPT 821
Query: 75 SPRRSPRISFFLEKENEPPGRE----LTKEDLFKTHSVPATPTSTPVP-----NPEAESS 125
+P+ + + KE P + T E T S +TPT+T P +P+ +
Sbjct: 822 TPKETAPTT---PKEPAPTTPKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTP 878
Query: 126 SKEGELDARDLEMSKK 141
E + LE S K
Sbjct: 879 ELSAEPTPKALENSPK 894
Score = 31.6 bits (70), Expect = 0.69
Identities = 31/112 (27%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEVPAVQSP 76
P P+PT P + P+ E P TP AAA P K + PA +P
Sbjct: 637 PEKPAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTP---KEPAPTTPKEPAPTTP 693
Query: 77 RRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKE 128
+ + KE P + T K P TP P P A +++KE
Sbjct: 694 KEPAPTT---PKETAPTTPKGTAPTTLK-EPAPTTP-KKPAPKELAPTTTKE 740
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 17 PRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVR----KPIVLKRIVAHAVEVPA 72
P+ P+PT P + + P+ E P TP A P K A + PA
Sbjct: 432 PKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPA 491
Query: 73 VQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPA------TPTSTPVPNPEAESSS 126
+P+ + + P TKE T PA PT+T P P S+
Sbjct: 492 PTTPKEPAPTT------PKEPAPTTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSA 545
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/120 (25%), Positives = 41/120 (34%), Gaps = 20/120 (16%)
Query: 11 AAQRSGPRAPSPTKPLRRSQRKSGSELPSILPEIWPKTPSAAAVRKPIVLKRIVAHAVEV 70
AA + P+ P+PT P + P+ E P TP A P LK
Sbjct: 671 AAAPNTPKEPAPTTPKEPAPTTPKEPAPTTPKETAPTTPKGTA---PTTLKE-------- 719
Query: 71 PAVQSPRRSPRISFFLEKENEPPGRELTKEDLFKTHSVPATP--TSTPVPNPEAESSSKE 128
PA +P++ EP K P TP T+ P A ++ KE
Sbjct: 720 PAPTTPKKPAPKELAPTTTKEPTSTTCDK-------PAPTTPKGTAPTTPKEPAPTTPKE 772
>gi|16757970 niban protein isoform 2 [Homo sapiens]
Length = 928
Score = 33.1 bits (74), Expect = 0.24
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 145 SYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSG--VSPVVCSKLTEVPRVCAKPWAPD 202
S + L+ ++ ++P RR+ G+LG+E LS K EVP AK
Sbjct: 582 SLTDLKPPTGSNQASPARRASAILPGVLGSETLSNEVFQESEEEKQPEVPSSLAK--GES 639
Query: 203 MTLPGISPPPE 213
++LPG SPPP+
Sbjct: 640 LSLPGPSPPPD 650
>gi|113204609 zinc finger protein 750 [Homo sapiens]
Length = 723
Score = 32.7 bits (73), Expect = 0.31
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 10/47 (21%)
Query: 118 PNPEAESSSKEGELDARDLEMSKKVRRSYSRLETLGSASTSTPGRRS 164
P PEA+ SSK G+ D +MS + GSA+T +PGR S
Sbjct: 380 PIPEAKDSSKAGQRDTEGSKMSPRA----------GSAATGSPGRPS 416
>gi|212275945 male-specific lethal 3-like 1 isoform a [Homo sapiens]
Length = 521
Score = 32.7 bits (73), Expect = 0.31
Identities = 54/216 (25%), Positives = 73/216 (33%), Gaps = 52/216 (24%)
Query: 22 PTKPLRRSQRKSGSELPSILPEIWPKTP----SAAAVRKPIVLKRIVAHAVEVPAVQSPR 77
P K S +S EL P + P TP S +P KR A E A+QS R
Sbjct: 293 PIKESATSTNRSQEELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKA---EPEALQSLR 349
Query: 78 RSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKEGELDARDLE 137
RS R S ++ +E S+ P P+ + L
Sbjct: 350 RSTRHSANCDRLSE----------------------SSASPQPKRRQQDTSASMPKLFLH 387
Query: 138 MSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGVSPVVCSKLTEVPRVCAK 197
+ KK +SR + + S G GFEG + E+ V +
Sbjct: 388 LEKKTP-VHSRSSSPIPLTPSKEGSAVFAGFEG---------------RRTNEINEVLSW 431
Query: 198 PWAPDMTLPGISPPP-------EKQKRKKKKMPEIL 226
PD PG PPP + R K+PEIL
Sbjct: 432 KLVPDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEIL 467
>gi|17975761 male-specific lethal 3-like 1 isoform c [Homo sapiens]
Length = 355
Score = 32.7 bits (73), Expect = 0.31
Identities = 54/216 (25%), Positives = 73/216 (33%), Gaps = 52/216 (24%)
Query: 22 PTKPLRRSQRKSGSELPSILPEIWPKTP----SAAAVRKPIVLKRIVAHAVEVPAVQSPR 77
P K S +S EL P + P TP S +P KR A E A+QS R
Sbjct: 127 PIKESATSTNRSQEELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKA---EPEALQSLR 183
Query: 78 RSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKEGELDARDLE 137
RS R S ++ +E S+ P P+ + L
Sbjct: 184 RSTRHSANCDRLSE----------------------SSASPQPKRRQQDTSASMPKLFLH 221
Query: 138 MSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGVSPVVCSKLTEVPRVCAK 197
+ KK +SR + + S G GFEG + E+ V +
Sbjct: 222 LEKKTP-VHSRSSSPIPLTPSKEGSAVFAGFEG---------------RRTNEINEVLSW 265
Query: 198 PWAPDMTLPGISPPP-------EKQKRKKKKMPEIL 226
PD PG PPP + R K+PEIL
Sbjct: 266 KLVPDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEIL 301
>gi|17975759 male-specific lethal 3-like 1 isoform b [Homo sapiens]
Length = 462
Score = 32.7 bits (73), Expect = 0.31
Identities = 54/216 (25%), Positives = 73/216 (33%), Gaps = 52/216 (24%)
Query: 22 PTKPLRRSQRKSGSELPSILPEIWPKTP----SAAAVRKPIVLKRIVAHAVEVPAVQSPR 77
P K S +S EL P + P TP S +P KR A E A+QS R
Sbjct: 234 PIKESATSTNRSQEELSPSPPLLNPSTPQSTESQPTTGEPATPKRRKA---EPEALQSLR 290
Query: 78 RSPRISFFLEKENEPPGRELTKEDLFKTHSVPATPTSTPVPNPEAESSSKEGELDARDLE 137
RS R S ++ +E S+ P P+ + L
Sbjct: 291 RSTRHSANCDRLSE----------------------SSASPQPKRRQQDTSASMPKLFLH 328
Query: 138 MSKKVRRSYSRLETLGSASTSTPGRRSCFGFEGLLGAEDLSGVSPVVCSKLTEVPRVCAK 197
+ KK +SR + + S G GFEG + E+ V +
Sbjct: 329 LEKKTP-VHSRSSSPIPLTPSKEGSAVFAGFEG---------------RRTNEINEVLSW 372
Query: 198 PWAPDMTLPGISPPP-------EKQKRKKKKMPEIL 226
PD PG PPP + R K+PEIL
Sbjct: 373 KLVPDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEIL 408
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,909,899
Number of Sequences: 37866
Number of extensions: 647095
Number of successful extensions: 3257
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 193
Number of HSP's that attempted gapping in prelim test: 3004
Number of HSP's gapped (non-prelim): 451
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.