Guide to the Human Genome
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Name: ABCA10 Sequence: fasta or formatted (1543aa) NCBI GI: 153792144
Description:

ATP-binding cassette, sub-family A, member 10

Referenced in:

ATP-binding Cassette Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         77           2
 C cysteine            2.0         31           1
 D aspartate           4.2         65           2
 E glutamate           6.9        107           3
 F phenylalanine       6.5        100           2
 G glycine             5.6         86           2
 H histidine           2.1         33           2
 I isoleucine          8.0        124           2
 K lysine              6.5        100           3
 L leucine            12.1        187           3
 M methionine          3.1         48           2
 N asparagine          3.8         59           2
 P proline             3.7         57           2
 Q glutamine           3.5         54           3
 R arginine            3.8         58           2
 S serine              7.5        116           2
 T threonine           5.3         82           2
 V valine              5.8         90           3
 W tryptophan          1.5         23           1
 Y tyrosine            3.0         46           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP-binding cassette, sub-family A, member 10 [Homo... 
ABCA9                 0.622   ATP-binding cassette, sub-family A, member 9 
ABCA6                 0.607   ATP-binding cassette, sub-family A, member 6 
ABCA8                 0.578   ATP-binding cassette, sub-family A member 8 
ABCA5                 0.380   ATP-binding cassette, sub-family A , member 5 
ABCA5                 0.380   ATP-binding cassette, sub-family A , member 5 
ABCA3                 0.098   ATP-binding cassette, sub-family A member 3 
ABCA1                 0.091   ATP-binding cassette, sub-family A member 1 
ABCA2                 0.088   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA2                 0.088   ATP-binding cassette, sub-family A, member 2 isoform...
ABCA7                 0.082   ATP-binding cassette, sub-family A, member 7 
ABCA12                0.082   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA12                0.082   ATP-binding cassette, sub-family A, member 12 isofor...
ABCA13                0.081   ATP binding cassette, sub-family A (ABC1), member 13...
ABCA4                 0.074   ATP-binding cassette, sub-family A member 4 
LOC342293             0.031   PREDICTED: similar to hCG18626 
LOC342293             0.031   PREDICTED: similar to hCG18626 
LOC342293             0.031   PREDICTED: similar to hCG18626 
ABCG8                 0.022   ATP-binding cassette sub-family G member 8 
ABCG1                 0.021   ATP-binding cassette sub-family G member 1 isoform 7...
ABCG1                 0.021   ATP-binding cassette sub-family G member 1 isoform 6...
ABCG1                 0.021   ATP-binding cassette sub-family G member 1 isoform 5...
ABCG1                 0.021   ATP-binding cassette sub-family G member 1 isoform 3...
ABCG1                 0.021   ATP-binding cassette sub-family G member 1 isoform 4...
ABCG1                 0.021   ATP-binding cassette sub-family G member 1 isoform 2...
ABCG4                 0.019   ATP-binding cassette, subfamily G, member 4 
ABCG4                 0.019   ATP-binding cassette, subfamily G, member 4 
ABCG2                 0.018   ATP-binding cassette, sub-family G, member 2 
ABCB1                 0.016   ATP-binding cassette, subfamily B, member 1 
ABCG5                 0.016   ATP-binding cassette sub-family G member 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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