Guide to the Human Genome
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Name: FEM1B Sequence: fasta or formatted (627aa) NCBI GI: 7657265
Description:

fem-1 homolog b

Referenced in:

Ankyrin Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         59           2
 C cysteine            2.7         17           1
 D aspartate           6.1         38           2
 E glutamate           6.1         38           2
 F phenylalanine       2.6         16           1
 G glycine             5.1         32           2
 H histidine           4.3         27           1
 I isoleucine          6.5         41           3
 K lysine              4.6         29           1
 L leucine            11.2         70           3
 M methionine          1.9         12           1
 N asparagine          6.5         41           2
 P proline             2.4         15           2
 Q glutamine           3.7         23           2
 R arginine            5.6         35           2
 S serine              4.6         29           1
 T threonine           5.4         34           2
 V valine              7.2         45           2
 W tryptophan          0.5          3           1
 Y tyrosine            3.7         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fem-1 homolog b 
FEM1C                 0.325   feminization 1 homolog a 
FEM1A                 0.283   fem-1 homolog a 
LOC652634             0.086   PREDICTED: similar to fem-1 homolog a, partial [Hom...
ANK1                  0.076   ankyrin 1 isoform 9 
ANK1                  0.076   ankyrin 1 isoform 1 
ANK1                  0.076   ankyrin 1 isoform 3 
ANK1                  0.076   ankyrin 1 isoform 2 
ANK1                  0.076   ankyrin 1 isoform 4 
ANK3                  0.075   ankyrin 3 isoform 1 
ANK2                  0.071   ankyrin 2 isoform 3 
ANK2                  0.071   ankyrin 2 isoform 2 
ANK2                  0.071   ankyrin 2 isoform 1 
ANKRD29               0.064   ankyrin repeat domain 29 
ANKRD50               0.064   ankyrin repeat domain 50 
RIPK4                 0.063   ankyrin repeat domain 3 
ANKRD17               0.062   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.062   ankyrin repeat domain protein 17 isoform b 
TANC1                 0.058   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC1                 0.058   tetratricopeptide repeat, ankyrin repeat and coiled...
INVS                  0.058   inversin isoform a 
INVS                  0.058   inversin isoform b 
ANKRD28               0.057   ankyrin repeat domain 28 
KIDINS220             0.057   kinase D-interacting substrate of 220 kDa 
TANC2                 0.057   tetratricopeptide repeat, ankyrin repeat and coiled...
ANKRD44               0.056   ankyrin repeat domain 44 
DAPK1                 0.055   death-associated protein kinase 1 
ANKS1A                0.053   ankyrin repeat and sterile alpha motif domain conta...
ANKHD1                0.053   ankyrin repeat and KH domain containing 1 isoform 1 ...
ANKHD1-EIF4EBP3       0.053   ANKHD1-EIF4EBP3 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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