Guide to the Human Genome
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Search of human proteins with 17530787

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens]
         (108 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens]         235   7e-63
gi|187167261 prokineticin 2 isoform a precursor [Homo sapiens]        223   3e-59
gi|14165282 prokineticin 1 [Homo sapiens]                             121   1e-28
gi|7110719 dickkopf homolog 1 precursor [Homo sapiens]                 42   1e-04
gi|7657025 dickkopf homolog 4 precursor [Homo sapiens]                 41   2e-04
gi|7657023 dickkopf homolog 2 precursor [Homo sapiens]                 40   3e-04
gi|66346689 dickkopf homolog 3 precursor [Homo sapiens]                39   0.001
gi|40548393 dickkopf homolog 3 precursor [Homo sapiens]                39   0.001
gi|40548389 dickkopf homolog 3 precursor [Homo sapiens]                39   0.001
gi|58218998 hypothetical protein LOC340204 [Homo sapiens]              32   0.084
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot...    30   0.32 
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo...    30   0.32 
gi|169790853 keratin, hair, basic, 1 [Homo sapiens]                    30   0.32 
gi|134031945 SCO-spondin [Homo sapiens]                                30   0.42 
gi|155029556 hypothetical protein LOC389383 [Homo sapiens]             30   0.42 
gi|167830411 natriuretic peptide receptor 1 [Homo sapiens]             29   0.93 
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]             29   0.93 
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ...    29   0.93 
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ...    29   0.93 
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]                29   0.93 
gi|38788416 laminin, alpha 1 precursor [Homo sapiens]                  28   1.2  
gi|21450863 attractin isoform 2 [Homo sapiens]                         28   1.6  
gi|21450861 attractin isoform 1 [Homo sapiens]                         28   1.6  
gi|4502895 colipase preproprotein [Homo sapiens]                       28   2.1  
gi|4505845 phospholipase A2, group X [Homo sapiens]                    28   2.1  
gi|145309326 laminin, gamma 1 precursor [Homo sapiens]                 27   2.7  
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s...    27   2.7  
gi|110611156 laminin, gamma 3 precursor [Homo sapiens]                 27   2.7  
gi|10190748 CEGP1 protein [Homo sapiens]                               27   3.5  
gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]                 26   6.0  

>gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens]
          Length = 108

 Score =  235 bits (599), Expect = 7e-63
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60
           MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
Sbjct: 1   MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60

Query: 61  MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK 108
           MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK
Sbjct: 61  MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK 108


>gi|187167261 prokineticin 2 isoform a precursor [Homo sapiens]
          Length = 129

 Score =  223 bits (567), Expect = 3e-59
 Identities = 108/129 (83%), Positives = 108/129 (83%), Gaps = 21/129 (16%)

Query: 1   MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60
           MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
Sbjct: 1   MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60

Query: 61  MGKLGDSCHPLTRK---------------------VPFFGRRMHHTCPCLPGLACLRTSF 99
           MGKLGDSCHPLTRK                     VPFFGRRMHHTCPCLPGLACLRTSF
Sbjct: 61  MGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSF 120

Query: 100 NRFICLAQK 108
           NRFICLAQK
Sbjct: 121 NRFICLAQK 129


>gi|14165282 prokineticin 1 [Homo sapiens]
          Length = 105

 Score =  121 bits (303), Expect = 1e-28
 Identities = 48/87 (55%), Positives = 63/87 (72%)

Query: 18  LLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPF 77
           +LL     D AVITGAC++D QCG G CCA+S+W++ +R+CTP+G+ G+ CHP + KVPF
Sbjct: 10  MLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTPLGREGEECHPGSHKVPF 69

Query: 78  FGRRMHHTCPCLPGLACLRTSFNRFIC 104
           F +R HHTCPCLP L C R    R+ C
Sbjct: 70  FRKRKHHTCPCLPNLLCSRFPDGRYRC 96


>gi|7110719 dickkopf homolog 1 precursor [Homo sapiens]
          Length = 266

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 34  CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93
           C + S C  G+CCA   W K   IC P+ K G  C    RK    G  +   C C  GL+
Sbjct: 189 CLRSSDCASGLCCARHFWSK---ICKPVLKEGQVCTKHRRK-GSHGLEIFQRCYCGEGLS 244

Query: 94  C 94
           C
Sbjct: 245 C 245


>gi|7657025 dickkopf homolog 4 precursor [Homo sapiens]
          Length = 224

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 33  ACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL 92
           +C +   CG G+CCA   W K   IC P+   G  C     K       +   C C PGL
Sbjct: 144 SCLRTFDCGPGLCCARHFWTK---ICKPVLLEGQVCSRRGHKDTAQAPEIFQRCDCGPGL 200

Query: 93  AC 94
            C
Sbjct: 201 LC 202


>gi|7657023 dickkopf homolog 2 precursor [Homo sapiens]
          Length = 259

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 34  CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93
           C + S C  G CCA   W K   IC P+   G+ C    RK    G  +   C C  GL+
Sbjct: 183 CLRSSDCIEGFCCARHFWTK---ICKPVLHQGEVC-TKQRKKGSHGLEIFQRCDCAKGLS 238

Query: 94  C 94
           C
Sbjct: 239 C 239


>gi|66346689 dickkopf homolog 3 precursor [Homo sapiens]
          Length = 350

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 34  CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87
           CD    C  G+CCA    +    +CTP+   G+ CH P +R +      +        CP
Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266

Query: 88  CLPGLAC 94
           C  GL C
Sbjct: 267 CASGLLC 273


>gi|40548393 dickkopf homolog 3 precursor [Homo sapiens]
          Length = 350

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 34  CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87
           CD    C  G+CCA    +    +CTP+   G+ CH P +R +      +        CP
Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266

Query: 88  CLPGLAC 94
           C  GL C
Sbjct: 267 CASGLLC 273


>gi|40548389 dickkopf homolog 3 precursor [Homo sapiens]
          Length = 350

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 34  CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87
           CD    C  G+CCA    +    +CTP+   G+ CH P +R +      +        CP
Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266

Query: 88  CLPGLAC 94
           C  GL C
Sbjct: 267 CASGLLC 273


>gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
          Length = 121

 Score = 32.3 bits (72), Expect = 0.084
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 12  LLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPL 71
           L LL    L+P   +   +  +C ++  C  G C       +S   C   G  G  C   
Sbjct: 17  LFLLTRGSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESH--CAEKGSEGSLCQTQ 74

Query: 72  TRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLA 106
                FFG+  +  CPCL  L C+ +   +++ +A
Sbjct: 75  V----FFGQ--YRACPCLRNLTCIYSKNEKWLSIA 103


>gi|11038659 ADAM metallopeptidase with thrombospondin type 1
          motif, 2 isoform 2 [Homo sapiens]
          Length = 566

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/21 (76%), Positives = 16/21 (76%)

Query: 2  RSLCCAPLLLLLLLPPLLLTP 22
          R LC A LLLLLLLPP LL P
Sbjct: 10 RLLCPALLLLLLLLPPPLLPP 30



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 2  RSLCCAPLLLLLLL--PPLLLTPRAGDAAVITGACD 35
          R L C  LLLLLLL  PPLL  P     A +  A D
Sbjct: 9  RRLLCPALLLLLLLLPPPLLPPPPPPANARLAAAAD 44


>gi|110825974 ADAM metallopeptidase with thrombospondin type 1
          motif, 2 isoform 1 preproprotein [Homo sapiens]
          Length = 1211

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 16/21 (76%), Positives = 16/21 (76%)

Query: 2  RSLCCAPLLLLLLLPPLLLTP 22
          R LC A LLLLLLLPP LL P
Sbjct: 10 RLLCPALLLLLLLLPPPLLPP 30



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 2  RSLCCAPLLLLLLL--PPLLLTPRAGDAAVITGACD 35
          R L C  LLLLLLL  PPLL  P     A +  A D
Sbjct: 9  RRLLCPALLLLLLLLPPPLLPPPPPPANARLAAAAD 44


>gi|169790853 keratin, hair, basic, 1 [Homo sapiens]
          Length = 505

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 22  PRAGDAAVITGACDKDSQ----CGGGMCCAVSIWVKSIRICTPMGKLGDSC 68
           P  G+ AV TG C    Q    CGGG C   S  + S+ +    G  G SC
Sbjct: 456 PCNGNVAVSTGLCAPCGQLNTTCGGGSCGVGSCGISSLGV----GSCGSSC 502


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 68  CHPLTRKVPFFGRRMHHTCPCLPGLACL 95
           CH L  K PF+ R +   C C PG  CL
Sbjct: 770 CHRLVDKEPFYLRCLAAVCGCDPGSDCL 797


>gi|155029556 hypothetical protein LOC389383 [Homo sapiens]
          Length = 100

 Score = 30.0 bits (66), Expect = 0.42
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 30 ITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCL 89
          IT  C   S+C  G CC + +       C P  ++   C P T+         +  CPC 
Sbjct: 30 ITDRCFHHSECYSG-CCLMDL-DSGGAFCAPRARITMICLPQTKGAT------NIICPCR 81

Query: 90 PGLACL 95
           GL C+
Sbjct: 82 MGLTCI 87


>gi|167830411 natriuretic peptide receptor 1 [Homo sapiens]
          Length = 1061

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 16/25 (64%), Positives = 17/25 (68%)

Query: 9  LLLLLLLPPLLLTPRAGDAAVITGA 33
          LLLLLLLPPLLL  R   A  +T A
Sbjct: 14 LLLLLLLPPLLLLLRGSHAGNLTVA 38


>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
          Length = 1950

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 67   SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103
            SCHP+    P+      +TC C     CL T    ++
Sbjct: 1038 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1074


>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
            sapiens]
          Length = 2134

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 67   SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103
            SCHP+    P+      +TC C     CL T    ++
Sbjct: 1060 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1096


>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
            sapiens]
          Length = 2134

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 67   SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103
            SCHP+    P+      +TC C     CL T    ++
Sbjct: 1060 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1096


>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
          Length = 1541

 Score = 28.9 bits (63), Expect = 0.93
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 9/67 (13%)

Query: 30   ITGACDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMHHTCP 87
            +   C     C  GG+C        + R   P G  GD C  P  R   +FG      C 
Sbjct: 1081 VRAGCRHSGGCLNGGLCDP-----HTGRCLCPAGWTGDKCQSPCLRG--WFGEACAQRCS 1133

Query: 88   CLPGLAC 94
            C PG AC
Sbjct: 1134 CPPGAAC 1140



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 34   CDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL 92
            C++   C  GG C A +   +      P G LG  C+ LT     FG    H C C  G 
Sbjct: 1215 CEQLCGCLNGGSCDAATGACRC-----PTGFLGTDCN-LTCPQGRFGPNCTHVCGCGQGA 1268

Query: 93   AC 94
            AC
Sbjct: 1269 AC 1270



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 34  CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93
           C++  QC  G  C     V     C P G  G  C        FFG      C C  G A
Sbjct: 913 CEQRCQCQHGAACD---HVSGACTC-PAGWRGTFCEHAC-PAGFFGLDCRSACNCTAGAA 967

Query: 94  C 94
           C
Sbjct: 968 C 968



 Score = 25.8 bits (55), Expect = 7.9
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 34   CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH---PLTRKVPFFGRRMHHTCPCLP 90
            C     CG G  C     V    +C P G+ G  C    P  R    FG    HTC C  
Sbjct: 1258 CTHVCGCGQGAACDP---VTGTCLCPP-GRAGVRCERGCPQNR----FGVGCEHTCSCRN 1309

Query: 91   GLAC 94
            G  C
Sbjct: 1310 GGLC 1313


>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
          Length = 3075

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 29   VITGACDKDSQCGGGMCCAVSIWVKSIRICTP-----MGKLGDSCH 69
            V+TG C   S+ GG  C   S+  +    C P      G  GD+C+
Sbjct: 1058 VVTGHCQCKSKFGGRACDQCSLGYRDFPDCVPCDCDLRGTSGDACN 1103


>gi|21450863 attractin isoform 2 [Homo sapiens]
          Length = 1272

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 19/63 (30%)

Query: 9   LLLLLLLPPLLL------TPRAGDAAVITGA-------CDKDSQCGG------GMCCAVS 49
           LLLLLL PPLLL         A  AA ++G+       CD+    GG      G C   +
Sbjct: 63  LLLLLLSPPLLLLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPA 122

Query: 50  IWV 52
            WV
Sbjct: 123 GWV 125


>gi|21450861 attractin isoform 1 [Homo sapiens]
          Length = 1429

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 19/63 (30%)

Query: 9   LLLLLLLPPLLL------TPRAGDAAVITGA-------CDKDSQCGG------GMCCAVS 49
           LLLLLL PPLLL         A  AA ++G+       CD+    GG      G C   +
Sbjct: 63  LLLLLLSPPLLLLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPA 122

Query: 50  IWV 52
            WV
Sbjct: 123 GWV 125


>gi|4502895 colipase preproprotein [Homo sapiens]
          Length = 112

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 13/91 (14%)

Query: 9  LLLLLLLPPLLLTPRAGDAAVITGA-----CDKDSQCGGGMCCAVSIWVKSIRICTPMGK 63
          +L+LLL+   +     G   +I        C   +QC    CC  S  +   R CT M  
Sbjct: 4  ILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSN-CCQHSSALGLAR-CTSMAS 61

Query: 64 LGDSCHPLTRKVPFFGRRMHHTCPCLPGLAC 94
              C   T     +G  +++ CPC  GL C
Sbjct: 62 ENSECSVKT----LYG--IYYKCPCERGLTC 86


>gi|4505845 phospholipase A2, group X [Homo sapiens]
          Length = 165

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 5/30 (16%)

Query: 6  CAPLLLLLLLPPLLLT-----PRAGDAAVI 30
          C P++LLLLLP LLL      P +G+A+ I
Sbjct: 7  CLPIMLLLLLPSLLLLLLLPGPGSGEASRI 36


>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
          Length = 1609

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 25  GDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICT--PMGKLGDSCH---------PLTR 73
           GD+   T +  +   C GG  CAV    K + +CT  P G  G  C          PL R
Sbjct: 760 GDSTAGTSSDCQPCPCPGGSSCAVVPKTKEV-VCTNCPTGTTGKRCELCDDGYFGDPLGR 818

Query: 74  KVPFFGRRMHHTCPC 88
             P    R+   C C
Sbjct: 819 NGPV---RLCRLCQC 830


>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
           sapiens]
          Length = 1037

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 34  CDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCH---PLTRKVPFFGRRMHHTCPCL 89
           C ++ +C  GG+C   +   +    C P G  GD C    P+ R    FG+    TC C 
Sbjct: 272 CSQECRCHNGGLCDRFTGQCR----CAP-GYTGDRCREECPVGR----FGQDCAETCDCA 322

Query: 90  PGLAC 94
           P   C
Sbjct: 323 PDARC 327


>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
          Length = 1575

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 14/48 (29%)

Query: 58  CTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL---ACLRTSFNRF 102
           C P+G   D CHP T +           C C PG+   AC R     F
Sbjct: 919 CHPLGSQEDQCHPKTGQ-----------CTCRPGVTGQACDRCQLGFF 955


>gi|10190748 CEGP1 protein [Homo sapiens]
          Length = 999

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 8/43 (18%)

Query: 7  APLLLLLLLPPLLL-----TPRAGDAAVITGACDKDSQCGGGM 44
          A LLLLLLLPPLLL      P  G AA   G  +   +C  G+
Sbjct: 14 AVLLLLLLLPPLLLLAGAVPPGRGRAA---GPQEDVDECAQGL 53


>gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
          Length = 264

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 7  APLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGG 42
          +P  LLLLL  L  T     A V+TG+    S  GG
Sbjct: 7  SPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGG 42


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.332    0.145    0.512 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,843,536
Number of Sequences: 37866
Number of extensions: 209611
Number of successful extensions: 801
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 71
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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