BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens] (108 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens] 235 7e-63 gi|187167261 prokineticin 2 isoform a precursor [Homo sapiens] 223 3e-59 gi|14165282 prokineticin 1 [Homo sapiens] 121 1e-28 gi|7110719 dickkopf homolog 1 precursor [Homo sapiens] 42 1e-04 gi|7657025 dickkopf homolog 4 precursor [Homo sapiens] 41 2e-04 gi|7657023 dickkopf homolog 2 precursor [Homo sapiens] 40 3e-04 gi|66346689 dickkopf homolog 3 precursor [Homo sapiens] 39 0.001 gi|40548393 dickkopf homolog 3 precursor [Homo sapiens] 39 0.001 gi|40548389 dickkopf homolog 3 precursor [Homo sapiens] 39 0.001 gi|58218998 hypothetical protein LOC340204 [Homo sapiens] 32 0.084 gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot... 30 0.32 gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 30 0.32 gi|169790853 keratin, hair, basic, 1 [Homo sapiens] 30 0.32 gi|134031945 SCO-spondin [Homo sapiens] 30 0.42 gi|155029556 hypothetical protein LOC389383 [Homo sapiens] 30 0.42 gi|167830411 natriuretic peptide receptor 1 [Homo sapiens] 29 0.93 gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 29 0.93 gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 29 0.93 gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 29 0.93 gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 29 0.93 gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 28 1.2 gi|21450863 attractin isoform 2 [Homo sapiens] 28 1.6 gi|21450861 attractin isoform 1 [Homo sapiens] 28 1.6 gi|4502895 colipase preproprotein [Homo sapiens] 28 2.1 gi|4505845 phospholipase A2, group X [Homo sapiens] 28 2.1 gi|145309326 laminin, gamma 1 precursor [Homo sapiens] 27 2.7 gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 27 2.7 gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 27 2.7 gi|10190748 CEGP1 protein [Homo sapiens] 27 3.5 gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] 26 6.0 >gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens] Length = 108 Score = 235 bits (599), Expect = 7e-63 Identities = 108/108 (100%), Positives = 108/108 (100%) Query: 1 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP Sbjct: 1 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60 Query: 61 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK 108 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK Sbjct: 61 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK 108 >gi|187167261 prokineticin 2 isoform a precursor [Homo sapiens] Length = 129 Score = 223 bits (567), Expect = 3e-59 Identities = 108/129 (83%), Positives = 108/129 (83%), Gaps = 21/129 (16%) Query: 1 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP Sbjct: 1 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60 Query: 61 MGKLGDSCHPLTRK---------------------VPFFGRRMHHTCPCLPGLACLRTSF 99 MGKLGDSCHPLTRK VPFFGRRMHHTCPCLPGLACLRTSF Sbjct: 61 MGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSF 120 Query: 100 NRFICLAQK 108 NRFICLAQK Sbjct: 121 NRFICLAQK 129 >gi|14165282 prokineticin 1 [Homo sapiens] Length = 105 Score = 121 bits (303), Expect = 1e-28 Identities = 48/87 (55%), Positives = 63/87 (72%) Query: 18 LLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPF 77 +LL D AVITGAC++D QCG G CCA+S+W++ +R+CTP+G+ G+ CHP + KVPF Sbjct: 10 MLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTPLGREGEECHPGSHKVPF 69 Query: 78 FGRRMHHTCPCLPGLACLRTSFNRFIC 104 F +R HHTCPCLP L C R R+ C Sbjct: 70 FRKRKHHTCPCLPNLLCSRFPDGRYRC 96 >gi|7110719 dickkopf homolog 1 precursor [Homo sapiens] Length = 266 Score = 41.6 bits (96), Expect = 1e-04 Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93 C + S C G+CCA W K IC P+ K G C RK G + C C GL+ Sbjct: 189 CLRSSDCASGLCCARHFWSK---ICKPVLKEGQVCTKHRRK-GSHGLEIFQRCYCGEGLS 244 Query: 94 C 94 C Sbjct: 245 C 245 >gi|7657025 dickkopf homolog 4 precursor [Homo sapiens] Length = 224 Score = 40.8 bits (94), Expect = 2e-04 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 33 ACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL 92 +C + CG G+CCA W K IC P+ G C K + C C PGL Sbjct: 144 SCLRTFDCGPGLCCARHFWTK---ICKPVLLEGQVCSRRGHKDTAQAPEIFQRCDCGPGL 200 Query: 93 AC 94 C Sbjct: 201 LC 202 >gi|7657023 dickkopf homolog 2 precursor [Homo sapiens] Length = 259 Score = 40.4 bits (93), Expect = 3e-04 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%) Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93 C + S C G CCA W K IC P+ G+ C RK G + C C GL+ Sbjct: 183 CLRSSDCIEGFCCARHFWTK---ICKPVLHQGEVC-TKQRKKGSHGLEIFQRCDCAKGLS 238 Query: 94 C 94 C Sbjct: 239 C 239 >gi|66346689 dickkopf homolog 3 precursor [Homo sapiens] Length = 350 Score = 38.5 bits (88), Expect = 0.001 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87 CD C G+CCA + +CTP+ G+ CH P +R + + CP Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266 Query: 88 CLPGLAC 94 C GL C Sbjct: 267 CASGLLC 273 >gi|40548393 dickkopf homolog 3 precursor [Homo sapiens] Length = 350 Score = 38.5 bits (88), Expect = 0.001 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87 CD C G+CCA + +CTP+ G+ CH P +R + + CP Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266 Query: 88 CLPGLAC 94 C GL C Sbjct: 267 CASGLLC 273 >gi|40548389 dickkopf homolog 3 precursor [Homo sapiens] Length = 350 Score = 38.5 bits (88), Expect = 0.001 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87 CD C G+CCA + +CTP+ G+ CH P +R + + CP Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266 Query: 88 CLPGLAC 94 C GL C Sbjct: 267 CASGLLC 273 >gi|58218998 hypothetical protein LOC340204 [Homo sapiens] Length = 121 Score = 32.3 bits (72), Expect = 0.084 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%) Query: 12 LLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPL 71 L LL L+P + + +C ++ C G C +S C G G C Sbjct: 17 LFLLTRGSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESH--CAEKGSEGSLCQTQ 74 Query: 72 TRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLA 106 FFG+ + CPCL L C+ + +++ +A Sbjct: 75 V----FFGQ--YRACPCLRNLTCIYSKNEKWLSIA 103 >gi|11038659 ADAM metallopeptidase with thrombospondin type 1 motif, 2 isoform 2 [Homo sapiens] Length = 566 Score = 30.4 bits (67), Expect = 0.32 Identities = 16/21 (76%), Positives = 16/21 (76%) Query: 2 RSLCCAPLLLLLLLPPLLLTP 22 R LC A LLLLLLLPP LL P Sbjct: 10 RLLCPALLLLLLLLPPPLLPP 30 Score = 26.9 bits (58), Expect = 3.5 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 2 RSLCCAPLLLLLLL--PPLLLTPRAGDAAVITGACD 35 R L C LLLLLLL PPLL P A + A D Sbjct: 9 RRLLCPALLLLLLLLPPPLLPPPPPPANARLAAAAD 44 >gi|110825974 ADAM metallopeptidase with thrombospondin type 1 motif, 2 isoform 1 preproprotein [Homo sapiens] Length = 1211 Score = 30.4 bits (67), Expect = 0.32 Identities = 16/21 (76%), Positives = 16/21 (76%) Query: 2 RSLCCAPLLLLLLLPPLLLTP 22 R LC A LLLLLLLPP LL P Sbjct: 10 RLLCPALLLLLLLLPPPLLPP 30 Score = 26.9 bits (58), Expect = 3.5 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%) Query: 2 RSLCCAPLLLLLLL--PPLLLTPRAGDAAVITGACD 35 R L C LLLLLLL PPLL P A + A D Sbjct: 9 RRLLCPALLLLLLLLPPPLLPPPPPPANARLAAAAD 44 >gi|169790853 keratin, hair, basic, 1 [Homo sapiens] Length = 505 Score = 30.4 bits (67), Expect = 0.32 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%) Query: 22 PRAGDAAVITGACDKDSQ----CGGGMCCAVSIWVKSIRICTPMGKLGDSC 68 P G+ AV TG C Q CGGG C S + S+ + G G SC Sbjct: 456 PCNGNVAVSTGLCAPCGQLNTTCGGGSCGVGSCGISSLGV----GSCGSSC 502 >gi|134031945 SCO-spondin [Homo sapiens] Length = 5147 Score = 30.0 bits (66), Expect = 0.42 Identities = 13/28 (46%), Positives = 15/28 (53%) Query: 68 CHPLTRKVPFFGRRMHHTCPCLPGLACL 95 CH L K PF+ R + C C PG CL Sbjct: 770 CHRLVDKEPFYLRCLAAVCGCDPGSDCL 797 >gi|155029556 hypothetical protein LOC389383 [Homo sapiens] Length = 100 Score = 30.0 bits (66), Expect = 0.42 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%) Query: 30 ITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCL 89 IT C S+C G CC + + C P ++ C P T+ + CPC Sbjct: 30 ITDRCFHHSECYSG-CCLMDL-DSGGAFCAPRARITMICLPQTKGAT------NIICPCR 81 Query: 90 PGLACL 95 GL C+ Sbjct: 82 MGLTCI 87 >gi|167830411 natriuretic peptide receptor 1 [Homo sapiens] Length = 1061 Score = 28.9 bits (63), Expect = 0.93 Identities = 16/25 (64%), Positives = 17/25 (68%) Query: 9 LLLLLLLPPLLLTPRAGDAAVITGA 33 LLLLLLLPPLLL R A +T A Sbjct: 14 LLLLLLLPPLLLLLRGSHAGNLTVA 38 >gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] Length = 1950 Score = 28.9 bits (63), Expect = 0.93 Identities = 11/37 (29%), Positives = 16/37 (43%) Query: 67 SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103 SCHP+ P+ +TC C CL T ++ Sbjct: 1038 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1074 >gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo sapiens] Length = 2134 Score = 28.9 bits (63), Expect = 0.93 Identities = 11/37 (29%), Positives = 16/37 (43%) Query: 67 SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103 SCHP+ P+ +TC C CL T ++ Sbjct: 1060 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1096 >gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo sapiens] Length = 2134 Score = 28.9 bits (63), Expect = 0.93 Identities = 11/37 (29%), Positives = 16/37 (43%) Query: 67 SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103 SCHP+ P+ +TC C CL T ++ Sbjct: 1060 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1096 >gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] Length = 1541 Score = 28.9 bits (63), Expect = 0.93 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 9/67 (13%) Query: 30 ITGACDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMHHTCP 87 + C C GG+C + R P G GD C P R +FG C Sbjct: 1081 VRAGCRHSGGCLNGGLCDP-----HTGRCLCPAGWTGDKCQSPCLRG--WFGEACAQRCS 1133 Query: 88 CLPGLAC 94 C PG AC Sbjct: 1134 CPPGAAC 1140 Score = 27.3 bits (59), Expect = 2.7 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%) Query: 34 CDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL 92 C++ C GG C A + + P G LG C+ LT FG H C C G Sbjct: 1215 CEQLCGCLNGGSCDAATGACRC-----PTGFLGTDCN-LTCPQGRFGPNCTHVCGCGQGA 1268 Query: 93 AC 94 AC Sbjct: 1269 AC 1270 Score = 25.8 bits (55), Expect = 7.9 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93 C++ QC G C V C P G G C FFG C C G A Sbjct: 913 CEQRCQCQHGAACD---HVSGACTC-PAGWRGTFCEHAC-PAGFFGLDCRSACNCTAGAA 967 Query: 94 C 94 C Sbjct: 968 C 968 Score = 25.8 bits (55), Expect = 7.9 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH---PLTRKVPFFGRRMHHTCPCLP 90 C CG G C V +C P G+ G C P R FG HTC C Sbjct: 1258 CTHVCGCGQGAACDP---VTGTCLCPP-GRAGVRCERGCPQNR----FGVGCEHTCSCRN 1309 Query: 91 GLAC 94 G C Sbjct: 1310 GGLC 1313 >gi|38788416 laminin, alpha 1 precursor [Homo sapiens] Length = 3075 Score = 28.5 bits (62), Expect = 1.2 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%) Query: 29 VITGACDKDSQCGGGMCCAVSIWVKSIRICTP-----MGKLGDSCH 69 V+TG C S+ GG C S+ + C P G GD+C+ Sbjct: 1058 VVTGHCQCKSKFGGRACDQCSLGYRDFPDCVPCDCDLRGTSGDACN 1103 >gi|21450863 attractin isoform 2 [Homo sapiens] Length = 1272 Score = 28.1 bits (61), Expect = 1.6 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 19/63 (30%) Query: 9 LLLLLLLPPLLL------TPRAGDAAVITGA-------CDKDSQCGG------GMCCAVS 49 LLLLLL PPLLL A AA ++G+ CD+ GG G C + Sbjct: 63 LLLLLLSPPLLLLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPA 122 Query: 50 IWV 52 WV Sbjct: 123 GWV 125 >gi|21450861 attractin isoform 1 [Homo sapiens] Length = 1429 Score = 28.1 bits (61), Expect = 1.6 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 19/63 (30%) Query: 9 LLLLLLLPPLLL------TPRAGDAAVITGA-------CDKDSQCGG------GMCCAVS 49 LLLLLL PPLLL A AA ++G+ CD+ GG G C + Sbjct: 63 LLLLLLSPPLLLLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPA 122 Query: 50 IWV 52 WV Sbjct: 123 GWV 125 >gi|4502895 colipase preproprotein [Homo sapiens] Length = 112 Score = 27.7 bits (60), Expect = 2.1 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 13/91 (14%) Query: 9 LLLLLLLPPLLLTPRAGDAAVITGA-----CDKDSQCGGGMCCAVSIWVKSIRICTPMGK 63 +L+LLL+ + G +I C +QC CC S + R CT M Sbjct: 4 ILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSN-CCQHSSALGLAR-CTSMAS 61 Query: 64 LGDSCHPLTRKVPFFGRRMHHTCPCLPGLAC 94 C T +G +++ CPC GL C Sbjct: 62 ENSECSVKT----LYG--IYYKCPCERGLTC 86 >gi|4505845 phospholipase A2, group X [Homo sapiens] Length = 165 Score = 27.7 bits (60), Expect = 2.1 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 5/30 (16%) Query: 6 CAPLLLLLLLPPLLLT-----PRAGDAAVI 30 C P++LLLLLP LLL P +G+A+ I Sbjct: 7 CLPIMLLLLLPSLLLLLLLPGPGSGEASRI 36 >gi|145309326 laminin, gamma 1 precursor [Homo sapiens] Length = 1609 Score = 27.3 bits (59), Expect = 2.7 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 15/75 (20%) Query: 25 GDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICT--PMGKLGDSCH---------PLTR 73 GD+ T + + C GG CAV K + +CT P G G C PL R Sbjct: 760 GDSTAGTSSDCQPCPCPGGSSCAVVPKTKEV-VCTNCPTGTTGKRCELCDDGYFGDPLGR 818 Query: 74 KVPFFGRRMHHTCPC 88 P R+ C C Sbjct: 819 NGPV---RLCRLCQC 830 >gi|122937343 platelet endothelial aggregation receptor 1 [Homo sapiens] Length = 1037 Score = 27.3 bits (59), Expect = 2.7 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 13/65 (20%) Query: 34 CDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCH---PLTRKVPFFGRRMHHTCPCL 89 C ++ +C GG+C + + C P G GD C P+ R FG+ TC C Sbjct: 272 CSQECRCHNGGLCDRFTGQCR----CAP-GYTGDRCREECPVGR----FGQDCAETCDCA 322 Query: 90 PGLAC 94 P C Sbjct: 323 PDARC 327 >gi|110611156 laminin, gamma 3 precursor [Homo sapiens] Length = 1575 Score = 27.3 bits (59), Expect = 2.7 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 14/48 (29%) Query: 58 CTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL---ACLRTSFNRF 102 C P+G D CHP T + C C PG+ AC R F Sbjct: 919 CHPLGSQEDQCHPKTGQ-----------CTCRPGVTGQACDRCQLGFF 955 >gi|10190748 CEGP1 protein [Homo sapiens] Length = 999 Score = 26.9 bits (58), Expect = 3.5 Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 8/43 (18%) Query: 7 APLLLLLLLPPLLL-----TPRAGDAAVITGACDKDSQCGGGM 44 A LLLLLLLPPLLL P G AA G + +C G+ Sbjct: 14 AVLLLLLLLPPLLLLAGAVPPGRGRAA---GPQEDVDECAQGL 53 >gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] Length = 264 Score = 26.2 bits (56), Expect = 6.0 Identities = 15/36 (41%), Positives = 18/36 (50%) Query: 7 APLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGG 42 +P LLLLL L T A V+TG+ S GG Sbjct: 7 SPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGG 42 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.332 0.145 0.512 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,843,536 Number of Sequences: 37866 Number of extensions: 209611 Number of successful extensions: 801 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 744 Number of HSP's gapped (non-prelim): 71 length of query: 108 length of database: 18,247,518 effective HSP length: 78 effective length of query: 30 effective length of database: 15,293,970 effective search space: 458819100 effective search space used: 458819100 T: 11 A: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.