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Search of human proteins with 17530787
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens] 235 7e-63
gi|187167261 prokineticin 2 isoform a precursor [Homo sapiens] 223 3e-59
gi|14165282 prokineticin 1 [Homo sapiens] 121 1e-28
gi|7110719 dickkopf homolog 1 precursor [Homo sapiens] 42 1e-04
gi|7657025 dickkopf homolog 4 precursor [Homo sapiens] 41 2e-04
gi|7657023 dickkopf homolog 2 precursor [Homo sapiens] 40 3e-04
gi|66346689 dickkopf homolog 3 precursor [Homo sapiens] 39 0.001
gi|40548393 dickkopf homolog 3 precursor [Homo sapiens] 39 0.001
gi|40548389 dickkopf homolog 3 precursor [Homo sapiens] 39 0.001
gi|58218998 hypothetical protein LOC340204 [Homo sapiens] 32 0.084
gi|11038659 ADAM metallopeptidase with thrombospondin type 1 mot... 30 0.32
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 30 0.32
gi|169790853 keratin, hair, basic, 1 [Homo sapiens] 30 0.32
gi|134031945 SCO-spondin [Homo sapiens] 30 0.42
gi|155029556 hypothetical protein LOC389383 [Homo sapiens] 30 0.42
gi|167830411 natriuretic peptide receptor 1 [Homo sapiens] 29 0.93
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 29 0.93
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 29 0.93
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 29 0.93
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 29 0.93
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 28 1.2
gi|21450863 attractin isoform 2 [Homo sapiens] 28 1.6
gi|21450861 attractin isoform 1 [Homo sapiens] 28 1.6
gi|4502895 colipase preproprotein [Homo sapiens] 28 2.1
gi|4505845 phospholipase A2, group X [Homo sapiens] 28 2.1
gi|145309326 laminin, gamma 1 precursor [Homo sapiens] 27 2.7
gi|122937343 platelet endothelial aggregation receptor 1 [Homo s... 27 2.7
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 27 2.7
gi|10190748 CEGP1 protein [Homo sapiens] 27 3.5
gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens] 26 6.0
>gi|17530787 prokineticin 2 isoform b precursor [Homo sapiens]
Length = 108
Score = 235 bits (599), Expect = 7e-63
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60
MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
Sbjct: 1 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60
Query: 61 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK 108
MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK
Sbjct: 61 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK 108
>gi|187167261 prokineticin 2 isoform a precursor [Homo sapiens]
Length = 129
Score = 223 bits (567), Expect = 3e-59
Identities = 108/129 (83%), Positives = 108/129 (83%), Gaps = 21/129 (16%)
Query: 1 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60
MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP
Sbjct: 1 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 60
Query: 61 MGKLGDSCHPLTRK---------------------VPFFGRRMHHTCPCLPGLACLRTSF 99
MGKLGDSCHPLTRK VPFFGRRMHHTCPCLPGLACLRTSF
Sbjct: 61 MGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSF 120
Query: 100 NRFICLAQK 108
NRFICLAQK
Sbjct: 121 NRFICLAQK 129
>gi|14165282 prokineticin 1 [Homo sapiens]
Length = 105
Score = 121 bits (303), Expect = 1e-28
Identities = 48/87 (55%), Positives = 63/87 (72%)
Query: 18 LLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPF 77
+LL D AVITGAC++D QCG G CCA+S+W++ +R+CTP+G+ G+ CHP + KVPF
Sbjct: 10 MLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTPLGREGEECHPGSHKVPF 69
Query: 78 FGRRMHHTCPCLPGLACLRTSFNRFIC 104
F +R HHTCPCLP L C R R+ C
Sbjct: 70 FRKRKHHTCPCLPNLLCSRFPDGRYRC 96
>gi|7110719 dickkopf homolog 1 precursor [Homo sapiens]
Length = 266
Score = 41.6 bits (96), Expect = 1e-04
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93
C + S C G+CCA W K IC P+ K G C RK G + C C GL+
Sbjct: 189 CLRSSDCASGLCCARHFWSK---ICKPVLKEGQVCTKHRRK-GSHGLEIFQRCYCGEGLS 244
Query: 94 C 94
C
Sbjct: 245 C 245
>gi|7657025 dickkopf homolog 4 precursor [Homo sapiens]
Length = 224
Score = 40.8 bits (94), Expect = 2e-04
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 33 ACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL 92
+C + CG G+CCA W K IC P+ G C K + C C PGL
Sbjct: 144 SCLRTFDCGPGLCCARHFWTK---ICKPVLLEGQVCSRRGHKDTAQAPEIFQRCDCGPGL 200
Query: 93 AC 94
C
Sbjct: 201 LC 202
>gi|7657023 dickkopf homolog 2 precursor [Homo sapiens]
Length = 259
Score = 40.4 bits (93), Expect = 3e-04
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93
C + S C G CCA W K IC P+ G+ C RK G + C C GL+
Sbjct: 183 CLRSSDCIEGFCCARHFWTK---ICKPVLHQGEVC-TKQRKKGSHGLEIFQRCDCAKGLS 238
Query: 94 C 94
C
Sbjct: 239 C 239
>gi|66346689 dickkopf homolog 3 precursor [Homo sapiens]
Length = 350
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87
CD C G+CCA + +CTP+ G+ CH P +R + + CP
Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266
Query: 88 CLPGLAC 94
C GL C
Sbjct: 267 CASGLLC 273
>gi|40548393 dickkopf homolog 3 precursor [Homo sapiens]
Length = 350
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87
CD C G+CCA + +CTP+ G+ CH P +R + + CP
Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266
Query: 88 CLPGLAC 94
C GL C
Sbjct: 267 CASGLLC 273
>gi|40548389 dickkopf homolog 3 precursor [Homo sapiens]
Length = 350
Score = 38.5 bits (88), Expect = 0.001
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTCP 87
CD C G+CCA + +CTP+ G+ CH P +R + + CP
Sbjct: 208 CDNQRDCQPGLCCAFQRGL-LFPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRCP 266
Query: 88 CLPGLAC 94
C GL C
Sbjct: 267 CASGLLC 273
>gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
Length = 121
Score = 32.3 bits (72), Expect = 0.084
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 12 LLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPL 71
L LL L+P + + +C ++ C G C +S C G G C
Sbjct: 17 LFLLTRGSLSPTKYNLLELKESCIRNQDCETGCCQRAPDNCESH--CAEKGSEGSLCQTQ 74
Query: 72 TRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLA 106
FFG+ + CPCL L C+ + +++ +A
Sbjct: 75 V----FFGQ--YRACPCLRNLTCIYSKNEKWLSIA 103
>gi|11038659 ADAM metallopeptidase with thrombospondin type 1
motif, 2 isoform 2 [Homo sapiens]
Length = 566
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 2 RSLCCAPLLLLLLLPPLLLTP 22
R LC A LLLLLLLPP LL P
Sbjct: 10 RLLCPALLLLLLLLPPPLLPP 30
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 2 RSLCCAPLLLLLLL--PPLLLTPRAGDAAVITGACD 35
R L C LLLLLLL PPLL P A + A D
Sbjct: 9 RRLLCPALLLLLLLLPPPLLPPPPPPANARLAAAAD 44
>gi|110825974 ADAM metallopeptidase with thrombospondin type 1
motif, 2 isoform 1 preproprotein [Homo sapiens]
Length = 1211
Score = 30.4 bits (67), Expect = 0.32
Identities = 16/21 (76%), Positives = 16/21 (76%)
Query: 2 RSLCCAPLLLLLLLPPLLLTP 22
R LC A LLLLLLLPP LL P
Sbjct: 10 RLLCPALLLLLLLLPPPLLPP 30
Score = 26.9 bits (58), Expect = 3.5
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 2 RSLCCAPLLLLLLL--PPLLLTPRAGDAAVITGACD 35
R L C LLLLLLL PPLL P A + A D
Sbjct: 9 RRLLCPALLLLLLLLPPPLLPPPPPPANARLAAAAD 44
>gi|169790853 keratin, hair, basic, 1 [Homo sapiens]
Length = 505
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 22 PRAGDAAVITGACDKDSQ----CGGGMCCAVSIWVKSIRICTPMGKLGDSC 68
P G+ AV TG C Q CGGG C S + S+ + G G SC
Sbjct: 456 PCNGNVAVSTGLCAPCGQLNTTCGGGSCGVGSCGISSLGV----GSCGSSC 502
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 30.0 bits (66), Expect = 0.42
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 68 CHPLTRKVPFFGRRMHHTCPCLPGLACL 95
CH L K PF+ R + C C PG CL
Sbjct: 770 CHRLVDKEPFYLRCLAAVCGCDPGSDCL 797
>gi|155029556 hypothetical protein LOC389383 [Homo sapiens]
Length = 100
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 30 ITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCL 89
IT C S+C G CC + + C P ++ C P T+ + CPC
Sbjct: 30 ITDRCFHHSECYSG-CCLMDL-DSGGAFCAPRARITMICLPQTKGAT------NIICPCR 81
Query: 90 PGLACL 95
GL C+
Sbjct: 82 MGLTCI 87
>gi|167830411 natriuretic peptide receptor 1 [Homo sapiens]
Length = 1061
Score = 28.9 bits (63), Expect = 0.93
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 9 LLLLLLLPPLLLTPRAGDAAVITGA 33
LLLLLLLPPLLL R A +T A
Sbjct: 14 LLLLLLLPPLLLLLRGSHAGNLTVA 38
>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
Length = 1950
Score = 28.9 bits (63), Expect = 0.93
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 67 SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103
SCHP+ P+ +TC C CL T ++
Sbjct: 1038 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1074
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 28.9 bits (63), Expect = 0.93
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 67 SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103
SCHP+ P+ +TC C CL T ++
Sbjct: 1060 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1096
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 28.9 bits (63), Expect = 0.93
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 67 SCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFI 103
SCHP+ P+ +TC C CL T ++
Sbjct: 1060 SCHPIVNPKPYHEECKKYTCTCENSQDCLCTILGNYV 1096
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 28.9 bits (63), Expect = 0.93
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 9/67 (13%)
Query: 30 ITGACDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMHHTCP 87
+ C C GG+C + R P G GD C P R +FG C
Sbjct: 1081 VRAGCRHSGGCLNGGLCDP-----HTGRCLCPAGWTGDKCQSPCLRG--WFGEACAQRCS 1133
Query: 88 CLPGLAC 94
C PG AC
Sbjct: 1134 CPPGAAC 1140
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 34 CDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL 92
C++ C GG C A + + P G LG C+ LT FG H C C G
Sbjct: 1215 CEQLCGCLNGGSCDAATGACRC-----PTGFLGTDCN-LTCPQGRFGPNCTHVCGCGQGA 1268
Query: 93 AC 94
AC
Sbjct: 1269 AC 1270
Score = 25.8 bits (55), Expect = 7.9
Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLA 93
C++ QC G C V C P G G C FFG C C G A
Sbjct: 913 CEQRCQCQHGAACD---HVSGACTC-PAGWRGTFCEHAC-PAGFFGLDCRSACNCTAGAA 967
Query: 94 C 94
C
Sbjct: 968 C 968
Score = 25.8 bits (55), Expect = 7.9
Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 34 CDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH---PLTRKVPFFGRRMHHTCPCLP 90
C CG G C V +C P G+ G C P R FG HTC C
Sbjct: 1258 CTHVCGCGQGAACDP---VTGTCLCPP-GRAGVRCERGCPQNR----FGVGCEHTCSCRN 1309
Query: 91 GLAC 94
G C
Sbjct: 1310 GGLC 1313
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 29 VITGACDKDSQCGGGMCCAVSIWVKSIRICTP-----MGKLGDSCH 69
V+TG C S+ GG C S+ + C P G GD+C+
Sbjct: 1058 VVTGHCQCKSKFGGRACDQCSLGYRDFPDCVPCDCDLRGTSGDACN 1103
>gi|21450863 attractin isoform 2 [Homo sapiens]
Length = 1272
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 19/63 (30%)
Query: 9 LLLLLLLPPLLL------TPRAGDAAVITGA-------CDKDSQCGG------GMCCAVS 49
LLLLLL PPLLL A AA ++G+ CD+ GG G C +
Sbjct: 63 LLLLLLSPPLLLLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPA 122
Query: 50 IWV 52
WV
Sbjct: 123 GWV 125
>gi|21450861 attractin isoform 1 [Homo sapiens]
Length = 1429
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 19/63 (30%)
Query: 9 LLLLLLLPPLLL------TPRAGDAAVITGA-------CDKDSQCGG------GMCCAVS 49
LLLLLL PPLLL A AA ++G+ CD+ GG G C +
Sbjct: 63 LLLLLLSPPLLLLLLPCEAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPA 122
Query: 50 IWV 52
WV
Sbjct: 123 GWV 125
>gi|4502895 colipase preproprotein [Homo sapiens]
Length = 112
Score = 27.7 bits (60), Expect = 2.1
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 9 LLLLLLLPPLLLTPRAGDAAVITGA-----CDKDSQCGGGMCCAVSIWVKSIRICTPMGK 63
+L+LLL+ + G +I C +QC CC S + R CT M
Sbjct: 4 ILILLLVALSVAYAAPGPRGIIINLENGELCMNSAQCKSN-CCQHSSALGLAR-CTSMAS 61
Query: 64 LGDSCHPLTRKVPFFGRRMHHTCPCLPGLAC 94
C T +G +++ CPC GL C
Sbjct: 62 ENSECSVKT----LYG--IYYKCPCERGLTC 86
>gi|4505845 phospholipase A2, group X [Homo sapiens]
Length = 165
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 5/30 (16%)
Query: 6 CAPLLLLLLLPPLLLT-----PRAGDAAVI 30
C P++LLLLLP LLL P +G+A+ I
Sbjct: 7 CLPIMLLLLLPSLLLLLLLPGPGSGEASRI 36
>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
Length = 1609
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 25 GDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICT--PMGKLGDSCH---------PLTR 73
GD+ T + + C GG CAV K + +CT P G G C PL R
Sbjct: 760 GDSTAGTSSDCQPCPCPGGSSCAVVPKTKEV-VCTNCPTGTTGKRCELCDDGYFGDPLGR 818
Query: 74 KVPFFGRRMHHTCPC 88
P R+ C C
Sbjct: 819 NGPV---RLCRLCQC 830
>gi|122937343 platelet endothelial aggregation receptor 1 [Homo
sapiens]
Length = 1037
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 13/65 (20%)
Query: 34 CDKDSQC-GGGMCCAVSIWVKSIRICTPMGKLGDSCH---PLTRKVPFFGRRMHHTCPCL 89
C ++ +C GG+C + + C P G GD C P+ R FG+ TC C
Sbjct: 272 CSQECRCHNGGLCDRFTGQCR----CAP-GYTGDRCREECPVGR----FGQDCAETCDCA 322
Query: 90 PGLAC 94
P C
Sbjct: 323 PDARC 327
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 14/48 (29%)
Query: 58 CTPMGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGL---ACLRTSFNRF 102
C P+G D CHP T + C C PG+ AC R F
Sbjct: 919 CHPLGSQEDQCHPKTGQ-----------CTCRPGVTGQACDRCQLGFF 955
>gi|10190748 CEGP1 protein [Homo sapiens]
Length = 999
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 8/43 (18%)
Query: 7 APLLLLLLLPPLLL-----TPRAGDAAVITGACDKDSQCGGGM 44
A LLLLLLLPPLLL P G AA G + +C G+
Sbjct: 14 AVLLLLLLLPPLLLLAGAVPPGRGRAA---GPQEDVDECAQGL 53
>gi|67189007 mucin 1 isoform 2 precursor [Homo sapiens]
Length = 264
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 7 APLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGG 42
+P LLLLL L T A V+TG+ S GG
Sbjct: 7 SPFFLLLLLTVLTATTAPKPATVVTGSGHASSTPGG 42
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.332 0.145 0.512
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,843,536
Number of Sequences: 37866
Number of extensions: 209611
Number of successful extensions: 801
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 71
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.