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Search of human proteins with 17149834
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|17149834 sortilin 1 preproprotein [Homo sapiens]
(831 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|17149834 sortilin 1 preproprotein [Homo sapiens] 1714 0.0
gi|4507157 sortilin-related receptor containing LDLR class A rep... 250 3e-66
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 237 4e-62
gi|61743975 SORCS receptor 1 isoform b [Homo sapiens] 226 7e-59
gi|61743973 SORCS receptor 1 isoform a [Homo sapiens] 226 7e-59
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 215 2e-55
gi|24025682 F-box and leucine-rich repeat protein 16 [Homo sapiens] 34 0.49
gi|7705881 zinc finger protein 580 [Homo sapiens] 34 0.49
gi|46361970 zinc finger protein 580 [Homo sapiens] 34 0.49
gi|6631075 BCL2-associated athanogene 4 [Homo sapiens] 33 0.83
gi|169172087 PREDICTED: hypothetical protein [Homo sapiens] 33 1.1
gi|113419362 PREDICTED: hypothetical protein [Homo sapiens] 33 1.1
gi|113418886 PREDICTED: hypothetical protein [Homo sapiens] 33 1.1
gi|113419893 PREDICTED: hypothetical protein [Homo sapiens] 33 1.1
gi|33239445 eukaryotic translation initiation factor 3, subunit ... 32 1.9
gi|83367072 eukaryotic translation initiation factor 3, subunit ... 32 1.9
gi|148236531 hypothetical protein LOC339779 [Homo sapiens] 32 1.9
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 32 3.2
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 32 3.2
gi|16753221 cadherin 22 precursor [Homo sapiens] 32 3.2
gi|113426467 PREDICTED: UPF0607 protein ENSP00000381418-like [Ho... 31 4.1
gi|21217561 Shaw-related voltage-gated potassium channel protein... 31 4.1
gi|21217563 Shaw-related voltage-gated potassium channel protein... 31 4.1
gi|24497458 Shaw-related voltage-gated potassium channel protein... 31 4.1
gi|113426153 PREDICTED: UPF0607 protein ENSP00000381418-like [Ho... 31 5.4
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 31 5.4
gi|225735557 nuclear factor erythroid 2-like 3 [Homo sapiens] 31 5.4
gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens] 30 7.1
gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens] 30 7.1
gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens] 30 7.1
>gi|17149834 sortilin 1 preproprotein [Homo sapiens]
Length = 831
Score = 1714 bits (4439), Expect = 0.0
Identities = 831/831 (100%), Positives = 831/831 (100%)
Query: 1 MERPWGAADGLSRWPHGLGLLLLLQLLPPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWGL 60
MERPWGAADGLSRWPHGLGLLLLLQLLPPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWGL
Sbjct: 1 MERPWGAADGLSRWPHGLGLLLLLQLLPPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWGL 60
Query: 61 RAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDS 120
RAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDS
Sbjct: 61 RAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDS 120
Query: 121 TGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSG 180
TGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSG
Sbjct: 121 TGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSG 180
Query: 181 KVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLW 240
KVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLW
Sbjct: 181 KVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLW 240
Query: 241 VSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIG 300
VSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIG
Sbjct: 241 VSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIG 300
Query: 301 VKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDM 360
VKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDM
Sbjct: 301 VKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDM 360
Query: 361 VFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLS 420
VFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLS
Sbjct: 361 VFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLS 420
Query: 421 EDNSIQTMITFDQGGRWTHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLS 480
EDNSIQTMITFDQGGRWTHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLS
Sbjct: 421 EDNSIQTMITFDQGGRWTHLRKPENSECDATAKNKNECSLHIHASYSISQKLNVPMAPLS 480
Query: 481 EPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHS 540
EPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHS
Sbjct: 481 EPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHS 540
Query: 541 SRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSY 600
SRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSY
Sbjct: 541 SRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSY 600
Query: 601 TIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVT 660
TIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVT
Sbjct: 601 TIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVT 660
Query: 661 KQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPG 720
KQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPG
Sbjct: 661 KQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPG 720
Query: 721 DKCQGGVNPVREVKDLKKKCTSNFLSPEKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKK 780
DKCQGGVNPVREVKDLKKKCTSNFLSPEKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKK
Sbjct: 721 DKCQGGVNPVREVKDLKKKCTSNFLSPEKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKK 780
Query: 781 YVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTNKSGYHDDSDEDLLE 831
YVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTNKSGYHDDSDEDLLE
Sbjct: 781 YVCGGRFLVHRYSVLQQHAEANGVDGVDALDTASHTNKSGYHDDSDEDLLE 831
>gi|4507157 sortilin-related receptor containing LDLR class A
repeats preproprotein [Homo sapiens]
Length = 2214
Score = 250 bits (639), Expect = 3e-66
Identities = 224/766 (29%), Positives = 350/766 (45%), Gaps = 100/766 (13%)
Query: 20 LLLLLQLLPPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWG---LRAAAAGGAFPRGGRWR 76
L L+ LLPP L + +APLP+ G + V LR A G A RG
Sbjct: 15 LFTLVALLPPGALCEVWTQRLHGGSAPLPQDRGFLVVQGDPRELRLWARGDA--RGASRA 72
Query: 77 RSAPGEDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVI 136
P + ++ K+ Q +D + + W G+ + VI+ L L +
Sbjct: 73 DEKPLRRKRSAALQPEPIKVYG---QVSLNDSHNQMVVHWAGEKSNVIVALA--RDSLAL 127
Query: 137 MTFGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGR 196
S +Y S DYGK+FK I+D +N FG+ S V+ S
Sbjct: 128 ARPKSSDVYVSYDYGKSFKKISDKLN-------FGLG---NRSEAVIAQFYHSPADNKRY 177
Query: 197 IFRSS---------DFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENG---LWVSKN 244
IF + DF +PF +++S + S+ LL + LW S +
Sbjct: 178 IFADAYAQYLWITFDFCNTLQGFSIPFRAADLLLHS-KASNLLLGFDRSHPNKQLWKSDD 236
Query: 245 FGGKWEEIHKAVCLAKWGSD-----NTIFFTTYANGSCKADLGALELWRTSDLGKSFKTI 299
FG W I + V WG D NTI+ + G ++R++D +S +
Sbjct: 237 FGQTWIMIQEHVKSFSWGIDPYDKPNTIYIERHEPS------GYSTVFRSTDFFQSRENQ 290
Query: 300 GV---KIYSFGLGGRFLFASVM-----ADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFY 351
V ++ F L +++FA+ + +++ ++ ++ VS + AQ + Y
Sbjct: 291 EVILEEVRDFQLRDKYMFATKVVHLLGSEQQSSVQLWVSFGR-KPMRAAQFVTRHPINEY 349
Query: 352 SILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGE---------- 401
I A++D VF+ V + ++ S+ G+ +S SL+ LY + GG
Sbjct: 350 YIADASEDQVFVCVSHSNNRT--NLYISEAEGLKFSLSLENVLYYSPGGAGSDTLVRYFA 407
Query: 402 ----TDFTNVTSLRGVYITSVLS---EDNSIQTMITFDQGGRWTHLRKP------ENSEC 448
DF V L+GVYI ++++ + +++++ITFD+GG W L+ P E C
Sbjct: 408 NEPFADFHRVEGLQGVYIATLINGSMNEENMRSVITFDKGGTWEFLQAPAFTGYGEKINC 467
Query: 449 DATAKNKNECSLHIHASYSISQKLNVP---MAPLSEPNAVGIVIAHGSVGDAISVMVPDV 505
+ + CSLH+ + +SQ LN+ M LS+ +A G++IA GSVG ++ +V
Sbjct: 468 ELS----QGCSLHL--AQRLSQLLNLQLRRMPILSKESAPGLIIATGSVGKNLASKT-NV 520
Query: 506 YISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRD 565
YIS G W + L GPHYYT D GGII AI N +K+ST+EG+ W+T+ F+
Sbjct: 521 YISSSAGARWREALPGPHYYTWGDHGGIITAIAQGMET-NELKYSTNEGETWKTFIFSEK 579
Query: 566 PIYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHST 625
P++ GL +EPG +S +I+G + + S W+ ++ D L C E DY +W +
Sbjct: 580 PVFVYGLLTEPGEKSTVFTIFGSNKENVHS-WLILQVNATDALGVPCTENDYKLW----S 634
Query: 626 DPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCSLEDFLCDFGYYRPEND 685
++ + C+LG+K F R + C NG D+ S C C+ ED+ CDFG+ E+
Sbjct: 635 PSDERGNECLLGHKTVFKRRTPHATCFNGEDFDRPVVVSNCSCTREDYECDFGFKMSEDL 694
Query: 686 S--KCVEQPELKGHDLE---FCLYGREEHLTTNGYRKIPGDKCQGG 726
S CV PE G C G + T GYRKI GD C GG
Sbjct: 695 SLEVCVPDPEFSGKSYSPPVPCPVG-STYRRTRGYRKISGDTCSGG 739
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 237 bits (604), Expect = 4e-62
Identities = 190/722 (26%), Positives = 330/722 (45%), Gaps = 81/722 (11%)
Query: 39 APPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLAN 98
AP P P P GP G A A G RW R+AP G L +
Sbjct: 93 APGPSPGPAP---GP-----GEDGAPAAGY----RRWERAAP----LAGVASRAQVSLIS 136
Query: 99 NTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDIT 158
+ D + W G+++ VIL+LT ++ + +S L+RS D+G ++ +T
Sbjct: 137 TSFVLKGDATHNQAMVHWTGENSSVILILTKYYHADMGKVL-ESSLWRSSDFGTSYTKLT 195
Query: 159 DLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLT 218
T + F I P N KV+L + S R +F S+D F + +PF T
Sbjct: 196 LQPGVTTVIDNF--YICPTNKRKVILVSS-SLSDRDQSLFLSADEGATFQKQPIPFFVET 252
Query: 219 QMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCK 278
+++ P+ D +LA + E+ L+VS + G KW + + V D+ F + +
Sbjct: 253 -LIFHPKEEDKVLAYTKESKLYVSSDLGKKWTLLQERVT-----KDHV--FWSVSGVDAD 304
Query: 279 ADLGALELWRTSDLGKSFKTIGVKIY------------------SFGLGGRFLFASVMAD 320
DL +E DLG F+ + I+ S + ++F +
Sbjct: 305 PDLVHVE---AQDLGGDFRYVTCAIHNCSEKMLTAPFAGPIDHGSLTVQDDYIFFKATSA 361
Query: 321 KDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSD 380
T + +VS + + + + +LP + I++ ++ VF+ V E ++ SD
Sbjct: 362 NQT--KYYVSYRRNE-FVLMKLPKYALPKDLQIISTDESQVFVAVQEWYQMDTYNLYQSD 418
Query: 381 DRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSVLSE--DNSIQTMITFDQGGRWT 438
RG+ Y+ L + E+ ++ +RGV + ++ D + T+IT+++G W
Sbjct: 419 PRGVRYALVLQDVRSSRQAEESVLIDILEVRGVKGVFLANQKIDGKVMTLITYNKGRDWD 478
Query: 439 HLRKPENSECDATAKNKN----ECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSV 494
+LR P D K N +C LH+H ++ + ++ + ++ A G+++ G++
Sbjct: 479 YLRPPS---MDMNGKPTNCKPPDCHLHLHLRWADNPYVSGTVH--TKDTAPGLIMGAGNL 533
Query: 495 GDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEG 554
G + ++YI+ D G++W ++ E H+ LD GG+IVAI+ +S P+ ++KFS DEG
Sbjct: 534 GSQLVEYKEEMYITSDCGHTWRQVFEEEHHILYLDHGGVIVAIKDTSIPLKILKFSVDEG 593
Query: 555 QCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEE 614
W T+ FT ++ GL SEPG ++ ++++G S W +DF+ R C E
Sbjct: 594 LTWSTHNFTSTSVFVDGLLSEPGDETLVMTVFGHIS--FRSDWELVKVDFRPSFSRQCGE 651
Query: 615 KDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCSLEDFL 674
+DY+ W + D CI+G + F + + +S C GR + +C C DFL
Sbjct: 652 EDYSSWELSNLQ----GDRCIMGQQRSFRKRKSTSWCIKGRSFTSALTSRVCECRDSDFL 707
Query: 675 CDFGYYRPEND----SKCVE----QPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGG 726
CD+G+ R + +KC P D C G + + ++ GYRK+ + C+GG
Sbjct: 708 CDYGFERSSSSESSTNKCSANFWFNPLSPPDD---CALG-QTYTSSLGYRKVVSNVCEGG 763
Query: 727 VN 728
V+
Sbjct: 764 VD 765
>gi|61743975 SORCS receptor 1 isoform b [Homo sapiens]
Length = 1198
Score = 226 bits (576), Expect = 7e-59
Identities = 169/678 (24%), Positives = 316/678 (46%), Gaps = 54/678 (7%)
Query: 82 EDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQ 141
+ ++ R R +L + T D + W G ++ VIL+LT + + + +
Sbjct: 146 DPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLY-DYNLGSITE 204
Query: 142 SKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSS 201
S L+RS DYG ++ + D + I + + + P N K++L + S + SS
Sbjct: 205 SSLWRSTDYGTTYEKLNDKVGLKTILSY--LYVCPTNKRKIMLLTDPEIESS---LLISS 259
Query: 202 DFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKW 261
D + + L F+ + +++ P+ D++LA S + L+ S FG +W+ I + V +
Sbjct: 260 DEGATYQKYRLNFY-IQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNR- 317
Query: 262 GSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIGVKIY----------------S 305
F+ + + + DL LE RT D + T ++ S
Sbjct: 318 ------FYWSVMGSNKEPDLVHLEA-RTVDGHSHYLTCRMQNCTEANRNQPFPGYIDPDS 370
Query: 306 FGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHV 365
+ ++F + + R + + + + ++ +LP + +++ +++ VF V
Sbjct: 371 LIVQDHYVFVQLTSGG---RPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDENQVFAAV 427
Query: 366 DEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGE----TDFTNVTSLRGVYITSVLSE 421
E ++ SD RG+ ++ +L+ ++ ++ G E D V ++G+++ +
Sbjct: 428 QEWNQNDTYNLYISDTRGVYFTLALE-NVQSSRGPEGNIMIDLYEVAGIKGMFLANK-KI 485
Query: 422 DNSIQTMITFDQGGRWTHLRKPENS-ECDATAKNKNECSLHIHASYSISQKLNVPMAPLS 480
DN ++T IT+++G W L+ P+ D CSLH+H S + + +A S
Sbjct: 486 DNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIA--S 543
Query: 481 EPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHS 540
+ A I++A G++G +S +++S D G +W ++ E H LD GG++VA++H+
Sbjct: 544 KDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHT 603
Query: 541 SRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSY 600
S PI + S DEG+ W Y+FT P++ G+ EPG ++ ++++G S+W
Sbjct: 604 SLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSH--RSEWQLV 661
Query: 601 TIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVT 660
+D+K I +R C E+DY W HS + CI+G K + + + C G+ Y
Sbjct: 662 KVDYKSIFDRRCAEEDYRPWQLHSQG-----EACIMGAKRIYKKRKSERKCMQGK-YAGA 715
Query: 661 KQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDL-EFCLYGREEHLTTNGYRKIP 719
+ C+C+ DF CD+GY R N +C+ L + C G + +L + GYRK+
Sbjct: 716 MESEPCVCTEADFDCDYGYERHSN-GQCLPAFWFNPSSLSKDCSLG-QSYLNSTGYRKVV 773
Query: 720 GDKCQGGVNPVREVKDLK 737
+ C GV K K
Sbjct: 774 SNNCTDGVREQYTAKPQK 791
>gi|61743973 SORCS receptor 1 isoform a [Homo sapiens]
Length = 1168
Score = 226 bits (576), Expect = 7e-59
Identities = 169/678 (24%), Positives = 316/678 (46%), Gaps = 54/678 (7%)
Query: 82 EDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQ 141
+ ++ R R +L + T D + W G ++ VIL+LT + + + +
Sbjct: 146 DPDKATRFRMEELRLTSTTFALTGDSAHNQAMVHWSGHNSSVILILTKLY-DYNLGSITE 204
Query: 142 SKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSS 201
S L+RS DYG ++ + D + I + + + P N K++L + S + SS
Sbjct: 205 SSLWRSTDYGTTYEKLNDKVGLKTILSY--LYVCPTNKRKIMLLTDPEIESS---LLISS 259
Query: 202 DFAKNFVQTDLPFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKW 261
D + + L F+ + +++ P+ D++LA S + L+ S FG +W+ I + V +
Sbjct: 260 DEGATYQKYRLNFY-IQSLLFHPKQEDWILAYSQDQKLYSSAEFGRRWQLIQEGVVPNR- 317
Query: 262 GSDNTIFFTTYANGSCKADLGALELWRTSDLGKSFKTIGVKIY----------------S 305
F+ + + + DL LE RT D + T ++ S
Sbjct: 318 ------FYWSVMGSNKEPDLVHLEA-RTVDGHSHYLTCRMQNCTEANRNQPFPGYIDPDS 370
Query: 306 FGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYSILAANDDMVFMHV 365
+ ++F + + R + + + + ++ +LP + +++ +++ VF V
Sbjct: 371 LIVQDHYVFVQLTSGG---RPHYYVSYRRNAFAQMKLPKYALPKDMHVISTDENQVFAAV 427
Query: 366 DEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGE----TDFTNVTSLRGVYITSVLSE 421
E ++ SD RG+ ++ +L+ ++ ++ G E D V ++G+++ +
Sbjct: 428 QEWNQNDTYNLYISDTRGVYFTLALE-NVQSSRGPEGNIMIDLYEVAGIKGMFLANK-KI 485
Query: 422 DNSIQTMITFDQGGRWTHLRKPENS-ECDATAKNKNECSLHIHASYSISQKLNVPMAPLS 480
DN ++T IT+++G W L+ P+ D CSLH+H S + + +A S
Sbjct: 486 DNQVKTFITYNKGRDWRLLQAPDTDLRGDPVHCLLPYCSLHLHLKVSENPYTSGIIA--S 543
Query: 481 EPNAVGIVIAHGSVGDAISVMVPDVYISDDGGYSWTKMLEGPHYYTILDSGGIIVAIEHS 540
+ A I++A G++G +S +++S D G +W ++ E H LD GG++VA++H+
Sbjct: 544 KDTAPSIIVASGNIGSELSDTDISMFVSSDAGNTWRQIFEEEHSVLYLDQGGVLVAMKHT 603
Query: 541 SRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLASEPGARSMNISIWGFTESFLTSQWVSY 600
S PI + S DEG+ W Y+FT P++ G+ EPG ++ ++++G S+W
Sbjct: 604 SLPIRHLWLSFDEGRSWSKYSFTSIPLFVDGVLGEPGEETLIMTVFGHFSH--RSEWQLV 661
Query: 601 TIDFKDILERNCEEKDYTIWLAHSTDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVT 660
+D+K I +R C E+DY W HS + CI+G K + + + C G+ Y
Sbjct: 662 KVDYKSIFDRRCAEEDYRPWQLHSQG-----EACIMGAKRIYKKRKSERKCMQGK-YAGA 715
Query: 661 KQPSICLCSLEDFLCDFGYYRPENDSKCVEQPELKGHDL-EFCLYGREEHLTTNGYRKIP 719
+ C+C+ DF CD+GY R N +C+ L + C G + +L + GYRK+
Sbjct: 716 MESEPCVCTEADFDCDYGYERHSN-GQCLPAFWFNPSSLSKDCSLG-QSYLNSTGYRKVV 773
Query: 720 GDKCQGGVNPVREVKDLK 737
+ C GV K K
Sbjct: 774 SNNCTDGVREQYTAKPQK 791
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 215 bits (547), Expect = 2e-55
Identities = 176/699 (25%), Positives = 333/699 (47%), Gaps = 62/699 (8%)
Query: 55 GVSWGLRAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVA---KLANNTHQHVFDDLRGS 111
G +W A A G+ RG R E+ + R A +L + + D
Sbjct: 143 GDAWA--TAPADGS--RGSRPLAKGSREEVKAPRAGGSAAEDLRLPSTSFALTGDSAHNQ 198
Query: 112 VSLSWVGDSTGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITDLINNTFIRTEFG 171
+ W G ++ VIL+LT + + + +S L+RS DYG ++ + D + + +
Sbjct: 199 AMVHWSGHNSSVILILTKLY-DFNLGSVTESSLWRSTDYGTTYEKLNDKVGLKTVLSY-- 255
Query: 172 MAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLTQMMYSPQNSDYLL 231
+ + P N K++L ++ S I SSD + + L F+ + +++ P+ D++L
Sbjct: 256 LYVNPTNKRKIMLLSDPEMESS---ILISSDEGATYQKYRLTFY-IQSLLFHPKQEDWVL 311
Query: 232 ALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGSCKADLGALELWRTSD 291
A S + L+ S +FG +W+ +H+ + + F+ + A +ADL +E+ RT+D
Sbjct: 312 AYSLDQKLYSSMDFGRRWQLMHERITPNR-------FYWSVAGLDKEADLVHMEV-RTTD 363
Query: 292 LGKSFKTIGVKIYS----FGLGGRFLFASVMADKDTTRRIHVSTD---------QGDTWS 338
+ T ++ + G R + S + +D I V+T + + ++
Sbjct: 364 GYAHYLTCRIQECAETTRSGPFARSIDISSLVVQDEYIFIQVTTSGRASYYVSYRREAFA 423
Query: 339 MAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTT 398
+LP + I++ +++ VF V E ++ SD RGI ++ +++ ++ ++
Sbjct: 424 QIKLPKYSLPKDMHIISTDENQVFAAVQEWNQNDTYNLYISDTRGIYFTLAME-NIKSSR 482
Query: 399 G--GET--DFTNVTSLRGVYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSECDATAKN 454
G G + V ++G+++ + D+ ++T IT+++G W L+ P+ +
Sbjct: 483 GLMGNIIIELYEVAGIKGIFLANK-KVDDQVKTYITYNKGRDWRLLQAPDVDLRGSPVHC 541
Query: 455 KNE-CSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMVPDVYISDDGGY 513
CSLH+H S + + ++ S+ A G+V+A G++G +S V+IS DGG
Sbjct: 542 LLPFCSLHLHLQLSENPYSSGRIS--SKETAPGLVVATGNIGPELSYTDIGVFISSDGGN 599
Query: 514 SWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRDPIYFTGLA 573
+W ++ + + LD GG +VA++H+ P+ + S DEG W Y FT P++ G
Sbjct: 600 TWRQIFDEEYNVWFLDWGGALVAMKHTPLPVRHLWVSFDEGHSWDKYGFTSVPLFVDGAL 659
Query: 574 SEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEEKDYTIW-LAHSTDPEDYED 632
E G + ++++G L S+W +D+K I R+C ++DY W L + +P
Sbjct: 660 VEAGMETHIMTVFGHFS--LRSEWQLVKVDYKSIFSRHCTKEDYQTWHLLNQGEP----- 712
Query: 633 GCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCSLEDFLCDFGYYRPENDSKCVE-- 690
C++G ++ F + + + C GRD+ + C+C+ DF CD+GY R +S+CV
Sbjct: 713 -CVMGERKIFKKRKPGAQCALGRDHSGSVVSEPCVCANWDFECDYGYER-HGESQCVPAF 770
Query: 691 --QPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGGV 727
P D C G + +L + GYR+I + C G+
Sbjct: 771 WYNPASPSKD---CSLG-QSYLNSTGYRRIVSNNCTDGL 805
>gi|24025682 F-box and leucine-rich repeat protein 16 [Homo
sapiens]
Length = 479
Score = 34.3 bits (77), Expect = 0.49
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 8/72 (11%)
Query: 15 PHGLGLLLLLQLLPPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRAAAAGG-AFPRGG 73
P+GLG + + P + PPPP P P + P+ RAA AGG P GG
Sbjct: 27 PNGLGAASITKGTPAT--KNRPCQPPPPPTLPPPSLAAPLS-----RAALAGGPCTPAGG 79
Query: 74 RWRRSAPGEDEE 85
APG E
Sbjct: 80 PASALAPGHPAE 91
>gi|7705881 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 34.3 bits (77), Expect = 0.49
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 21 LLLLQLLPPS--TLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGGR 74
+LLL PP + S + +D PPP A P P+ GP ++AAG PR GR
Sbjct: 1 MLLLPPRPPHPRSSSPEAMDPPPPKAPPFPKAEGPSSTP----SSAAGPRPPRLGR 52
>gi|46361970 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 34.3 bits (77), Expect = 0.49
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 21 LLLLQLLPPS--TLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGGR 74
+LLL PP + S + +D PPP A P P+ GP ++AAG PR GR
Sbjct: 1 MLLLPPRPPHPRSSSPEAMDPPPPKAPPFPKAEGPSSTP----SSAAGPRPPRLGR 52
>gi|6631075 BCL2-associated athanogene 4 [Homo sapiens]
Length = 457
Score = 33.5 bits (75), Expect = 0.83
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 28 PPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGGRW 75
PP L R + P PP + R GP +W G +P GG W
Sbjct: 32 PPPPLYPLRPEPPQPPISWRVRGGGPAETTWLGEGGGGDGYYPSGGAW 79
>gi|169172087 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 33.1 bits (74), Expect = 1.1
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 37 LDAPPPPAAPLPRWSGPIGVSWGLRAAA-----------AGGAFPRGGRW 75
L++P PLPR GP G+ W L AA G P G RW
Sbjct: 150 LESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRLPCGARW 199
>gi|113419362 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 33.1 bits (74), Expect = 1.1
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 37 LDAPPPPAAPLPRWSGPIGVSWGLRAAA-----------AGGAFPRGGRW 75
L++P PLPR GP G+ W L AA G P G RW
Sbjct: 120 LESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRLPCGARW 169
>gi|113418886 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 33.1 bits (74), Expect = 1.1
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 37 LDAPPPPAAPLPRWSGPIGVSWGLRAAA-----------AGGAFPRGGRW 75
L++P PLPR GP G+ W L AA G P G RW
Sbjct: 120 LESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRLPCGARW 169
>gi|113419893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 33.1 bits (74), Expect = 1.1
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 37 LDAPPPPAAPLPRWSGPIGVSWGLRAAA-----------AGGAFPRGGRW 75
L++P PLPR GP G+ W L AA G P G RW
Sbjct: 120 LESPAAAQDPLPRHVGPSGLGWSLEPAARVLSGLLVGAGVGPRLPCGARW 169
>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
eta, 116kDa [Homo sapiens]
Length = 814
Score = 32.3 bits (72), Expect = 1.9
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 260 KWGSDNTIFFTTYANGSCKADLGALELWRTSDLG----KSFKTIGVKIYSFGLGGRFLFA 315
KW D F + L L ++ T +G KS K G+K +S+ GG +
Sbjct: 430 KWSHDGKFF--------ARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAF 481
Query: 316 SVMADKDTTRRI 327
V DKD R+
Sbjct: 482 WVPEDKDIPARV 493
>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
eta, 116kDa [Homo sapiens]
Length = 814
Score = 32.3 bits (72), Expect = 1.9
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 260 KWGSDNTIFFTTYANGSCKADLGALELWRTSDLG----KSFKTIGVKIYSFGLGGRFLFA 315
KW D F + L L ++ T +G KS K G+K +S+ GG +
Sbjct: 430 KWSHDGKFF--------ARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAF 481
Query: 316 SVMADKDTTRRI 327
V DKD R+
Sbjct: 482 WVPEDKDIPARV 493
>gi|148236531 hypothetical protein LOC339779 [Homo sapiens]
Length = 412
Score = 32.3 bits (72), Expect = 1.9
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 5 WGAADGLSRWPHGLGLLLLLQLLPPS----TLSQDRLDAPPPPAAPLP 48
WG + + PH L L Q LPPS + +Q R + PPPA+P P
Sbjct: 22 WGFSQLVDSSPHNLQPLSPHQGLPPSQPPFSSTQSRRPSSPPPASPSP 69
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 31.6 bits (70), Expect = 3.2
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 31 TLSQDRLDAPPPPAA-------PLPRWSGPIGVSWGLR---AAAAGGAFPRGGRWRRSAP 80
T S++ DAPP P+ P+ R S P G R AAAAG A PR W +
Sbjct: 105 TESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRS--WDEAEA 162
Query: 81 GEDEE 85
E+EE
Sbjct: 163 QEEEE 167
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 31.6 bits (70), Expect = 3.2
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 31 TLSQDRLDAPPPPAA-------PLPRWSGPIGVSWGLR---AAAAGGAFPRGGRWRRSAP 80
T S++ DAPP P+ P+ R S P G R AAAAG A PR W +
Sbjct: 105 TESRESYDAPPTPSGARLIPDFPVARSSSPGRKGSGKRPAAAAAAGSASPRS--WDEAEA 162
Query: 81 GEDEE 85
E+EE
Sbjct: 163 QEEEE 167
>gi|16753221 cadherin 22 precursor [Homo sapiens]
Length = 828
Score = 31.6 bits (70), Expect = 3.2
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 27/124 (21%)
Query: 15 PHGLGL---------LLLLQLLPPSTLSQDRLDA--PPPPAAPLPRWSGPIGVSWGLRAA 63
P G GL LLLL LLPP RL A P P+AP R G +G
Sbjct: 5 PEGRGLRAGVALSPALLLLLLLPPPPTLLGRLWAAGTPSPSAPGARQDGALG-------- 56
Query: 64 AAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQHVFDDLRGSVSLSWVGDSTGV 123
G RG W + E E G +V K+ +++ D+ G++ + G+ G
Sbjct: 57 --AGRVKRGWVWNQFFVVE-EYTGTEPLYVGKIHSDS-----DEGDGAIKYTISGEGAGT 108
Query: 124 ILVL 127
I ++
Sbjct: 109 IFLI 112
>gi|113426467 PREDICTED: UPF0607 protein ENSP00000381418-like [Homo
sapiens]
Length = 415
Score = 31.2 bits (69), Expect = 4.1
Identities = 20/43 (46%), Positives = 21/43 (48%)
Query: 4 PWGAADGLSRWPHGLGLLLLLQLLPPSTLSQDRLDAPPPPAAP 46
P AA SR G LL LQL PP L DR + PPP P
Sbjct: 313 PPRAAGHSSRKRKLSGPLLQLQLTPPLQLRWDRNEGPPPAKLP 355
>gi|21217561 Shaw-related voltage-gated potassium channel protein
2 isoform KV3.2a [Homo sapiens]
Length = 613
Score = 31.2 bits (69), Expect = 4.1
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 17 GLGLLLLLQLLPPS---TLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGG 73
G L LL PP T + D+L PPP +P PR G AG RGG
Sbjct: 31 GTRLALLASSEPPGDCLTTAGDKLQPSPPPLSPPPRAPPLSPGPGGCFEGGAGNCSSRGG 90
Query: 74 R 74
R
Sbjct: 91 R 91
>gi|21217563 Shaw-related voltage-gated potassium channel protein
2 isoform KV3.2b [Homo sapiens]
Length = 638
Score = 31.2 bits (69), Expect = 4.1
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 17 GLGLLLLLQLLPPS---TLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGG 73
G L LL PP T + D+L PPP +P PR G AG RGG
Sbjct: 31 GTRLALLASSEPPGDCLTTAGDKLQPSPPPLSPPPRAPPLSPGPGGCFEGGAGNCSSRGG 90
Query: 74 R 74
R
Sbjct: 91 R 91
>gi|24497458 Shaw-related voltage-gated potassium channel protein
2 isoform KV3.2c [Homo sapiens]
Length = 558
Score = 31.2 bits (69), Expect = 4.1
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 17 GLGLLLLLQLLPPS---TLSQDRLDAPPPPAAPLPRWSGPIGVSWGLRAAAAGGAFPRGG 73
G L LL PP T + D+L PPP +P PR G AG RGG
Sbjct: 31 GTRLALLASSEPPGDCLTTAGDKLQPSPPPLSPPPRAPPLSPGPGGCFEGGAGNCSSRGG 90
Query: 74 R 74
R
Sbjct: 91 R 91
>gi|113426153 PREDICTED: UPF0607 protein ENSP00000381418-like [Homo
sapiens]
Length = 415
Score = 30.8 bits (68), Expect = 5.4
Identities = 20/43 (46%), Positives = 21/43 (48%)
Query: 4 PWGAADGLSRWPHGLGLLLLLQLLPPSTLSQDRLDAPPPPAAP 46
P AA SR G LL LQL PP L DR + PPP P
Sbjct: 313 PPRAAGHSSRKRKLSGPLLQLQLTPPLQLRWDRDEGPPPAKLP 355
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 30.8 bits (68), Expect = 5.4
Identities = 25/75 (33%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 27 LPPSTLSQDRLDAPPPPAAPLPRWSGPIGVSWGL-------------RAAAAGGAFPRGG 73
LPP+ LS P P P P P SWG A GG + G
Sbjct: 1852 LPPAPLSP-----APGPPTPAPESHTPAPFSWGTAEYDSVVAAVQEGAAELEGGPYSPLG 1906
Query: 74 RWRRSAPGEDEECGR 88
+ R A GE EE GR
Sbjct: 1907 KDYRKAEGEREEEGR 1921
>gi|225735557 nuclear factor erythroid 2-like 3 [Homo sapiens]
Length = 694
Score = 30.8 bits (68), Expect = 5.4
Identities = 34/99 (34%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 1 MERPWGAADGLSRWPHGLGL------LLLLQLLPPSTLSQDR---LDAPPPPAAPLPRWS 51
++R W A GL L L L L LLPP TL QD L P A L +S
Sbjct: 4 LKRWWSAGGGLLHLTLLLSLAGLRVDLDLYLLLPPPTLLQDELLFLGGPASSAYALSPFS 63
Query: 52 GPIGVSWGLRAAAAGGAFPRGGRWRRSAPGEDEECGRVR 90
G WG AG P+G +AP E + VR
Sbjct: 64 ASGG--WG----RAGHLHPKGRELDPAAPPEGQLLREVR 96
>gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens]
Length = 1464
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 143 KLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSR---GGRIFR 199
K+Y ED G F D+TDL ++ + + + E + V+ T +S R G +++
Sbjct: 981 KIYECEDCGLGFVDLTDLTDHQKVHSRKCLVDSREYTHSVIHTHSISEYQRDYTGEQLYE 1040
Query: 200 SSDFAKNFVQTDLPF 214
++F+ + F
Sbjct: 1041 CPKCGESFIHSSFLF 1055
>gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens]
Length = 1588
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 143 KLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSR---GGRIFR 199
K+Y ED G F D+TDL ++ + + + E + V+ T +S R G +++
Sbjct: 1105 KIYECEDCGLGFVDLTDLTDHQKVHSRKCLVDSREYTHSVIHTHSISEYQRDYTGEQLYE 1164
Query: 200 SSDFAKNFVQTDLPF 214
++F+ + F
Sbjct: 1165 CPKCGESFIHSSFLF 1179
>gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens]
Length = 1462
Score = 30.4 bits (67), Expect = 7.1
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 143 KLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSR---GGRIFR 199
K+Y ED G F D+TDL ++ + + + E + V+ T +S R G +++
Sbjct: 979 KIYECEDCGLGFVDLTDLTDHQKVHSRKCLVDSREYTHSVIHTHSISEYQRDYTGEQLYE 1038
Query: 200 SSDFAKNFVQTDLPF 214
++F+ + F
Sbjct: 1039 CPKCGESFIHSSFLF 1053
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,673,932
Number of Sequences: 37866
Number of extensions: 1686932
Number of successful extensions: 5440
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 5341
Number of HSP's gapped (non-prelim): 68
length of query: 831
length of database: 18,247,518
effective HSP length: 111
effective length of query: 720
effective length of database: 14,044,392
effective search space: 10111962240
effective search space used: 10111962240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.