Guide to the Human Genome
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Name: ZNF580 Sequence: fasta or formatted (172aa) NCBI GI: 46361970
Description:

zinc finger protein 580

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt mRNA [172aa] zinc finger protein 580
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         17           2
 C cysteine            3.5          6           1
 D aspartate           2.3          4           1
 E glutamate           5.2          9           3
 F phenylalanine       2.9          5           1
 G glycine             6.4         11           1
 H histidine           5.8         10           1
 I isoleucine          0.6          1           1
 K lysine              3.5          6           1
 L leucine             8.1         14           3
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline            19.2         33           4
 Q glutamine           2.9          5           1
 R arginine           11.0         19           2
 S serine              8.7         15           3
 T threonine           3.5          6           1
 V valine              2.9          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 580 
ZNF580                1.000   zinc finger protein 580 
ZNF581                0.415   zinc finger protein 581 
ZNF524                0.251   zinc finger protein 524 
ZNF575                0.176   zinc finger protein 575 
ZNF205                0.176   zinc finger protein 205 
ZNF205                0.176   zinc finger protein 205 
ZNF500                0.173   zinc finger protein 500 
ZNF408                0.170   zinc finger protein 408 
ZNF579                0.170   zinc finger protein 579 
ZNF70                 0.170   zinc finger protein 70 
ZSCAN22               0.167   zinc finger and SCAN domain containing 22 
ZNF574                0.161   zinc finger protein 574 
ZNF837                0.161   zinc finger protein 837 isoform 1 
ZNF837                0.161   zinc finger protein 837 isoform 2 
ZNF787                0.161   zinc finger protein 787 
ZNF444                0.159   zinc finger protein 444 
KLF16                 0.159   BTE-binding protein 4 
ZBTB42                0.159   zinc finger and BTB domain containing 42 
LOC100292052          0.156   PREDICTED: similar to hCG1773661 
LOC100287226          0.156   PREDICTED: similar to hCG1773661 
LOC100287226          0.156   PREDICTED: hypothetical protein XP_002343677 
ZNF771                0.156   zinc finger protein 771 
ZNF771                0.156   zinc finger protein 771 
ZNF628                0.156   zinc finger protein 628 
ZNF629                0.156   zinc finger protein 629 
ZNF764                0.156   zinc finger protein 764 
ZNF534                0.153   zinc finger protein 534 isoform 2 
ZNF534                0.153   zinc finger protein 534 isoform 1 
ZNF75A                0.153   zinc finger protein 75a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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