Guide to the Human Genome
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Name: FRMD1 Sequence: fasta or formatted (549aa) NCBI GI: 170932510
Description:

FERM domain containing 1 isoform 1

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [481aa] FERM domain containing 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         42           2
 C cysteine            2.9         16           1
 D aspartate           4.0         22           2
 E glutamate           8.0         44           2
 F phenylalanine       3.3         18           2
 G glycine             5.5         30           1
 H histidine           6.0         33           1
 I isoleucine          2.7         15           2
 K lysine              3.6         20           2
 L leucine            10.4         57           2
 M methionine          1.8         10           1
 N asparagine          1.6          9           2
 P proline             6.2         34           2
 Q glutamine           5.8         32           2
 R arginine            9.5         52           1
 S serine              8.4         46           3
 T threonine           3.8         21           1
 V valine              5.3         29           2
 W tryptophan          0.7          4           1
 Y tyrosine            2.7         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   FERM domain containing 1 isoform 1 
FRMD1                 0.869   FERM domain containing 1 isoform 2 
FRMD6                 0.324   FERM domain containing 6 
FRMD6                 0.324   FERM domain containing 6 
PTPN13                0.096   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.095   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.095   protein tyrosine phosphatase, non-receptor type 13 i...
PTPN13                0.095   protein tyrosine phosphatase, non-receptor type 13 is...
FRMPD2                0.068   FERM and PDZ domain containing 2 isoform 1 
FRMPD2                0.068   FERM and PDZ domain containing 2 isoform 3 
EZR                   0.047   ezrin 
EZR                   0.047   ezrin 
RDX                   0.047   radixin 
MSN                   0.045   moesin 
PTPN14                0.034   protein tyrosine phosphatase, non-receptor type 14 [...
NF2                   0.034   neurofibromin 2 isoform 2 
NF2                   0.034   neurofibromin 2 isoform 2 
NF2                   0.034   neurofibromin 2 isoform 2 
NF2                   0.034   neurofibromin 2 isoform 1 
PTPN3                 0.034   protein tyrosine phosphatase, non-receptor type 3 i...
PTPN3                 0.034   protein tyrosine phosphatase, non-receptor type 3 i...
FRMD3                 0.033   FERM domain containing 3 
PTPN21                0.032   protein tyrosine phosphatase, non-receptor type 21 ...
PTPN4                 0.032   protein tyrosine phosphatase, non-receptor type 4 [Ho...
EPB41L1               0.031   erythrocyte membrane protein band 4.1-like 1 isoform...
EPB41L1               0.029   erythrocyte membrane protein band 4.1-like 1 isoform...
MYLIP                 0.028   myosin regulatory light chain interacting protein [H...
EPB41L4A              0.027   erythrocyte protein band 4.1-like 4 
EPB41L3               0.026   erythrocyte membrane protein band 4.1-like 3 
EPB41                 0.025   erythrocyte membrane protein band 4.1 (elliptocytosi...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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