Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 170763479

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|170763479 MMS19 nucleotide excision repair homolog [Homo
sapiens]
         (1030 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapi...  2028   0.0  
gi|150456415 HEAT repeat containing 5A [Homo sapiens]                  39   0.033
gi|166295188 DEP domain containing 1 isoform a [Homo sapiens]          35   0.36 
gi|38488716 DEP domain containing 1 isoform b [Homo sapiens]           35   0.36 
gi|54607053 GCN1 general control of amino-acid synthesis 1-like ...    34   0.62 
gi|157388904 HEAT repeat containing 2 [Homo sapiens]                   33   1.1  
gi|34485722 karyopherin alpha 3 [Homo sapiens]                         33   1.8  
gi|23510381 transportin 1 isoform 2 [Homo sapiens]                     32   2.4  
gi|133925811 transportin 1 isoform 1 [Homo sapiens]                    32   2.4  
gi|55749742 HEAT repeat containing 5B [Homo sapiens]                   32   2.4  
gi|66773038 cell division cycle 37 homolog (S. cerevisiae)-like ...    32   2.4  
gi|21361794 TIP120 protein [Homo sapiens]                              32   4.0  
gi|239754766 PREDICTED: hypothetical protein [Homo sapiens]            31   5.3  
gi|169171033 PREDICTED: hypothetical protein [Homo sapiens]            31   5.3  
gi|156151430 armadillo repeat containing 9 [Homo sapiens]              31   5.3  
gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens]             31   6.9  
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]             31   6.9  
gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]             31   6.9  
gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens]      31   6.9  
gi|110624774 mannose receptor, C type 2 [Homo sapiens]                 30   9.0  

>gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapiens]
          Length = 1030

 Score = 2028 bits (5255), Expect = 0.0
 Identities = 1030/1030 (100%), Positives = 1030/1030 (100%)

Query: 1    MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP 60
            MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP
Sbjct: 1    MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP 60

Query: 61   EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV 120
            EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV
Sbjct: 61   EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV 120

Query: 121  ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV 180
            ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV
Sbjct: 121  ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV 180

Query: 181  MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED 240
            MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED
Sbjct: 181  MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED 240

Query: 241  LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS 300
            LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS
Sbjct: 241  LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS 300

Query: 301  LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL 360
            LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL
Sbjct: 301  LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL 360

Query: 361  CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF 420
            CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF
Sbjct: 361  CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF 420

Query: 421  LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE 480
            LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE
Sbjct: 421  LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE 480

Query: 481  DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL 540
            DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL
Sbjct: 481  DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL 540

Query: 541  TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ 600
            TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ
Sbjct: 541  TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ 600

Query: 601  SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV 660
            SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV
Sbjct: 601  SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV 660

Query: 661  IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA 720
            IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA
Sbjct: 661  IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA 720

Query: 721  FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL 780
            FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL
Sbjct: 721  FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL 780

Query: 781  AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG 840
            AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG
Sbjct: 781  AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG 840

Query: 841  FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN 900
            FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN
Sbjct: 841  FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN 900

Query: 901  RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL 960
            RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL
Sbjct: 901  RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL 960

Query: 961  NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG 1020
            NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG
Sbjct: 961  NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG 1020

Query: 1021 EWFLLGSPGS 1030
            EWFLLGSPGS
Sbjct: 1021 EWFLLGSPGS 1030


>gi|150456415 HEAT repeat containing 5A [Homo sapiens]
          Length = 1753

 Score = 38.5 bits (88), Expect = 0.033
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 925 PDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTR 983
           PDC+VQ   +SCLQ L + AP+ ++L   +LV+       SP + +R A L C+  L +
Sbjct: 750 PDCLVQAQAISCLQQLHMFAPRHVNL--SSLVSCLCVNLCSPYLLLRRAVLACLRQLVQ 806


>gi|166295188 DEP domain containing 1 isoform a [Homo sapiens]
          Length = 811

 Score = 35.0 bits (79), Expect = 0.36
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 712 RRLIALLMAFVCSLPRNVEIPQLNQLM--RELL-------ELSCCHSCPFSSTAAAKCFA 762
           RR + LLM  +  + +NV++P+L+  M  R L+        L C          A +  +
Sbjct: 614 RRKLQLLMRMISRMSQNVDMPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVS 673

Query: 763 GLLNKHPAGQQLDEFLQLAVDK 784
            L++ H    Q+  +LQ AV+K
Sbjct: 674 FLMDHHQEILQVPSYLQTAVEK 695


>gi|38488716 DEP domain containing 1 isoform b [Homo sapiens]
          Length = 527

 Score = 35.0 bits (79), Expect = 0.36
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 9/82 (10%)

Query: 712 RRLIALLMAFVCSLPRNVEIPQLNQLM--RELL-------ELSCCHSCPFSSTAAAKCFA 762
           RR + LLM  +  + +NV++P+L+  M  R L+        L C          A +  +
Sbjct: 330 RRKLQLLMRMISRMSQNVDMPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVS 389

Query: 763 GLLNKHPAGQQLDEFLQLAVDK 784
            L++ H    Q+  +LQ AV+K
Sbjct: 390 FLMDHHQEILQVPSYLQTAVEK 411


>gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1
            [Homo sapiens]
          Length = 2671

 Score = 34.3 bits (77), Expect = 0.62
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)

Query: 909  PELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSM 968
            P++  +++ L+ ALS P   VQ S  SCL PL+    +     +  L+ + L    S   
Sbjct: 1335 PKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLL---ESDKY 1391

Query: 969  AVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKE 1014
            A R  A   +  L +    +L   + +++ AL   + DKK   R+E
Sbjct: 1392 AERKGAAYGLAGLVK-GLGILSLKQQEMMAALTDAIQDKKNFRRRE 1436


>gi|157388904 HEAT repeat containing 2 [Homo sapiens]
          Length = 855

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%)

Query: 907  LLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSP 966
            L P L   L  L  +L  P   V+  + SC   L    P    +  ++L+   +   S  
Sbjct: 160  LAPHLDDALRALRCSLLDPFAAVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQ 219

Query: 967  SMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFL 1024
               VR+AA++   A+        +     V+   A+ L D    VR+   S  G W L
Sbjct: 220  HWKVRVAAIEATGAVIHFGNGKSV---DDVLSHFAQRLFDDVPQVRRAVASVVGGWLL 274


>gi|34485722 karyopherin alpha 3 [Homo sapiens]
          Length = 521

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 61/271 (22%), Positives = 105/271 (38%), Gaps = 21/271 (7%)

Query: 309 VFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHLCEPDMKLV 368
           + Q A+       L+A+ +    LS S      +DL+ S +  IL  C      P ++  
Sbjct: 76  ILQNATSDNPVVQLSAVQAARKLLS-SDRNPPIDDLIKSGILPILVKCLERDDNPSLQFE 134

Query: 369 WPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTI--LEMLLGFLKLQQK 426
              A L   A+G SA+    V SN +PL L       Q+   + +  L  ++G     + 
Sbjct: 135 AAWA-LTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRD 193

Query: 427 WSYEDKDQRPLNGFKDQLCSLVFMALT-----------DPSTQLQLVGIRTLTVLGAQPD 475
           +       +PL  F      + F+              DP   ++ V      +L A   
Sbjct: 194 YVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETV----QEILPALCV 249

Query: 476 LLSYEDLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRV 535
           L+ + D+ + V  ++ LS+L  D  + ++  +  SG +  L P+  S   V      LR 
Sbjct: 250 LIYHTDINILVDTVWALSYL-TDGGNEQIQMVIDSGVVPFLVPL-LSHQEVKVQTAALRA 307

Query: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHP 566
             + +T  DE TQ   +   L     + +HP
Sbjct: 308 VGNIVTGTDEQTQVVLNCDVLSHFPNLLSHP 338


>gi|23510381 transportin 1 isoform 2 [Homo sapiens]
          Length = 890

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 16/87 (18%), Positives = 37/87 (42%)

Query: 929  VQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPV 988
            ++   ++C+   ++   Q + LH+D+ +     L+      VR    + +  L  +    
Sbjct: 190  IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249

Query: 989  LLPYKPQVIRALAKPLDDKKRLVRKEA 1015
            LLP+   ++  + +   D+   V  EA
Sbjct: 250  LLPHMHNIVEYMLQRTQDQDENVALEA 276


>gi|133925811 transportin 1 isoform 1 [Homo sapiens]
          Length = 898

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 16/87 (18%), Positives = 37/87 (42%)

Query: 929  VQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPV 988
            ++   ++C+   ++   Q + LH+D+ +     L+      VR    + +  L  +    
Sbjct: 198  IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 257

Query: 989  LLPYKPQVIRALAKPLDDKKRLVRKEA 1015
            LLP+   ++  + +   D+   V  EA
Sbjct: 258  LLPHMHNIVEYMLQRTQDQDENVALEA 284


>gi|55749742 HEAT repeat containing 5B [Homo sapiens]
          Length = 2071

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 926  DCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
            D +VQ + +SCLQ L + AP+ ++L   +LV        S  + +R AA+ C+  L +  
Sbjct: 1040 DSLVQAAAISCLQQLHMFAPRHVNL--SSLVPSLCVHLCSSHLLLRRAAVACLRQLAQRE 1097

Query: 986  TPVLLPYKPQVIRALAKPLDDKK 1008
               +  Y      +LAK   DK+
Sbjct: 1098 AAEVCEY----AMSLAKNTGDKE 1116


>gi|66773038 cell division cycle 37 homolog (S. cerevisiae)-like 1
           [Homo sapiens]
          Length = 337

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 562 VSTHPSIV-KETLPLLLQ---HLWQVNRGNMVAQSSDVIAVCQSLRQMAEKCQQDPESCW 617
           +S HP +V +ET   L+    HL    +G ++ Q +    V Q + +MA+ C  DP  C+
Sbjct: 182 LSDHPYLVCEETAKYLILWCFHLEAEKKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCF 241


>gi|21361794 TIP120 protein [Homo sapiens]
          Length = 1230

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 17/165 (10%)

Query: 873  VPALVQGFHAAPQD----VKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALS--CPD 926
            VP +V+  H   ++     +      L+ ++N LP   L   +P L+  ++ +L+     
Sbjct: 432  VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG-ALTQHIPVLVPGIIFSLNDKSSS 490

Query: 927  CVVQLSTLSCLQPLLLE-APQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
              +++  LSCL  +L   +PQV   HV  LV   +     P   +   AL     L ++ 
Sbjct: 491  SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI 550

Query: 986  TPV-------LLPYKPQVIRALAKPLD--DKKRLVRKEAVSARGE 1021
             P+         PY   +     K L   D  + V++ A+S  G+
Sbjct: 551  RPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595


>gi|239754766 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 359

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 818 SCLTARLMGLLSDPELGPAAADGFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALV 877
           SC+ A L  + SDP +GP++  G  + +  C              ++ Q F  D    ++
Sbjct: 72  SCIPALLAPVSSDPMVGPSSPSGAEISVGPC--------------LWCQGFACDVSQLVL 117

Query: 878 QGFHAAPQDVKPNYLKGLSHVLNRLPKPVLL--PELPTLLSLLL 919
           Q  H    +  P  + G +     LP+  LL  P  PTL S LL
Sbjct: 118 QTLHPLCPEDAPASVPGPA---PSLPRAGLLAAPSPPTLFSTLL 158


>gi|169171033 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 359

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 19/104 (18%)

Query: 818 SCLTARLMGLLSDPELGPAAADGFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALV 877
           SC+ A L  + SDP +GP++  G  + +  C              ++ Q F  D    ++
Sbjct: 72  SCIPALLAPVSSDPMVGPSSPSGAEISVGPC--------------LWCQGFACDVSQLVL 117

Query: 878 QGFHAAPQDVKPNYLKGLSHVLNRLPKPVLL--PELPTLLSLLL 919
           Q  H    +  P  + G +     LP+  LL  P  PTL S LL
Sbjct: 118 QTLHPLCPEDAPASVPGPA---PSLPRAGLLAAPSPPTLFSTLL 158


>gi|156151430 armadillo repeat containing 9 [Homo sapiens]
          Length = 665

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 34/279 (12%)

Query: 240 DLILSLRAVLAS---TPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACC---AVYGQKE 293
           +L+ SL A ++    TP + + +   L      + L+  +D  +   A     A     +
Sbjct: 247 ELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRASLAPVK 306

Query: 294 LKD--FLPSLWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSN 351
           LKD   LPSL     ++     S+R++A  L AL      L+ S      E +L +++SN
Sbjct: 307 LKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWR---LTTSHPGEQRETVLQAYISN 363

Query: 352 ILQDCRHHLCEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRR 411
            L DC  H     ++L+  ++ +++        A  S+    L L           +Q  
Sbjct: 364 DLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYL-----------AQNT 412

Query: 412 TILEMLLGFLKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDP--STQLQLVGIRTLTV 469
            +L+ML G LK       EDKD   +   ++ L +L   +L  P  +  +Q   I  L  
Sbjct: 413 KVLQMLEGRLK------EEDKD---IITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVD 463

Query: 470 LGAQPDLLSYEDLELAVGHLYRLSFLKEDSQSC-RVAAL 507
           +   PD LS   LE +V  L  L         C +VA L
Sbjct: 464 VLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGL 502


>gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens]
          Length = 1740

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
           CVV LS  S      +E P ++   +  LV K  ++S++ SMAV +  L+ +  L RLP
Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854


>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
          Length = 1807

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
           CVV LS  S      +E P ++   +  LV K  ++S++ SMAV +  L+ +  L RLP
Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854


>gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]
          Length = 1784

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
           CVV LS  S      +E P ++   +  LV K  ++S++ SMAV +  L+ +  L RLP
Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854


>gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens]
          Length = 516

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 764 LLNKHPAGQQL---DEFLQLAVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCL 820
           LL +HPA + L       +L  D  + G    P +S+A    LW  +AL   YHP  S  
Sbjct: 394 LLRRHPACRVLVHRPHGPELDADPYDPG-EEDPAQSRALESSLWELQALQRHYHPEVSKA 452

Query: 821 TARLMGLLSDPELGPA 836
            + +   LS PE+  A
Sbjct: 453 ASVINQALSMPEVSIA 468


>gi|110624774 mannose receptor, C type 2 [Homo sapiens]
          Length = 1479

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 487 GHLYRLSFLKEDSQSCRVAALEASGTLAALYPVA---FSSHLVPKLAEELRVGESNL 540
           GH YRL   K   Q  + A L   G L +++ +A   F +  + +  EEL +G ++L
Sbjct: 391 GHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDL 447


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,826,608
Number of Sequences: 37866
Number of extensions: 1695343
Number of successful extensions: 4205
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4168
Number of HSP's gapped (non-prelim): 51
length of query: 1030
length of database: 18,247,518
effective HSP length: 112
effective length of query: 918
effective length of database: 14,006,526
effective search space: 12857990868
effective search space used: 12857990868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press