BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapiens] (1030 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapi... 2028 0.0 gi|150456415 HEAT repeat containing 5A [Homo sapiens] 39 0.033 gi|166295188 DEP domain containing 1 isoform a [Homo sapiens] 35 0.36 gi|38488716 DEP domain containing 1 isoform b [Homo sapiens] 35 0.36 gi|54607053 GCN1 general control of amino-acid synthesis 1-like ... 34 0.62 gi|157388904 HEAT repeat containing 2 [Homo sapiens] 33 1.1 gi|34485722 karyopherin alpha 3 [Homo sapiens] 33 1.8 gi|23510381 transportin 1 isoform 2 [Homo sapiens] 32 2.4 gi|133925811 transportin 1 isoform 1 [Homo sapiens] 32 2.4 gi|55749742 HEAT repeat containing 5B [Homo sapiens] 32 2.4 gi|66773038 cell division cycle 37 homolog (S. cerevisiae)-like ... 32 2.4 gi|21361794 TIP120 protein [Homo sapiens] 32 4.0 gi|239754766 PREDICTED: hypothetical protein [Homo sapiens] 31 5.3 gi|169171033 PREDICTED: hypothetical protein [Homo sapiens] 31 5.3 gi|156151430 armadillo repeat containing 9 [Homo sapiens] 31 5.3 gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens] 31 6.9 gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] 31 6.9 gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens] 31 6.9 gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens] 31 6.9 gi|110624774 mannose receptor, C type 2 [Homo sapiens] 30 9.0 >gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapiens] Length = 1030 Score = 2028 bits (5255), Expect = 0.0 Identities = 1030/1030 (100%), Positives = 1030/1030 (100%) Query: 1 MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP 60 MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP Sbjct: 1 MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP 60 Query: 61 EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV 120 EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV Sbjct: 61 EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV 120 Query: 121 ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV 180 ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV Sbjct: 121 ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV 180 Query: 181 MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED 240 MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED Sbjct: 181 MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED 240 Query: 241 LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS 300 LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS Sbjct: 241 LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS 300 Query: 301 LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL 360 LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL Sbjct: 301 LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL 360 Query: 361 CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF 420 CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF Sbjct: 361 CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF 420 Query: 421 LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE 480 LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE Sbjct: 421 LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE 480 Query: 481 DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL 540 DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL Sbjct: 481 DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL 540 Query: 541 TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ 600 TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ Sbjct: 541 TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ 600 Query: 601 SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV 660 SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV Sbjct: 601 SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV 660 Query: 661 IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA 720 IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA Sbjct: 661 IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA 720 Query: 721 FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL 780 FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL Sbjct: 721 FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL 780 Query: 781 AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG 840 AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG Sbjct: 781 AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG 840 Query: 841 FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN 900 FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN Sbjct: 841 FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN 900 Query: 901 RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL 960 RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL Sbjct: 901 RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL 960 Query: 961 NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG 1020 NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG Sbjct: 961 NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG 1020 Query: 1021 EWFLLGSPGS 1030 EWFLLGSPGS Sbjct: 1021 EWFLLGSPGS 1030 >gi|150456415 HEAT repeat containing 5A [Homo sapiens] Length = 1753 Score = 38.5 bits (88), Expect = 0.033 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%) Query: 925 PDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTR 983 PDC+VQ +SCLQ L + AP+ ++L +LV+ SP + +R A L C+ L + Sbjct: 750 PDCLVQAQAISCLQQLHMFAPRHVNL--SSLVSCLCVNLCSPYLLLRRAVLACLRQLVQ 806 >gi|166295188 DEP domain containing 1 isoform a [Homo sapiens] Length = 811 Score = 35.0 bits (79), Expect = 0.36 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 9/82 (10%) Query: 712 RRLIALLMAFVCSLPRNVEIPQLNQLM--RELL-------ELSCCHSCPFSSTAAAKCFA 762 RR + LLM + + +NV++P+L+ M R L+ L C A + + Sbjct: 614 RRKLQLLMRMISRMSQNVDMPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVS 673 Query: 763 GLLNKHPAGQQLDEFLQLAVDK 784 L++ H Q+ +LQ AV+K Sbjct: 674 FLMDHHQEILQVPSYLQTAVEK 695 >gi|38488716 DEP domain containing 1 isoform b [Homo sapiens] Length = 527 Score = 35.0 bits (79), Expect = 0.36 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 9/82 (10%) Query: 712 RRLIALLMAFVCSLPRNVEIPQLNQLM--RELL-------ELSCCHSCPFSSTAAAKCFA 762 RR + LLM + + +NV++P+L+ M R L+ L C A + + Sbjct: 330 RRKLQLLMRMISRMSQNVDMPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVS 389 Query: 763 GLLNKHPAGQQLDEFLQLAVDK 784 L++ H Q+ +LQ AV+K Sbjct: 390 FLMDHHQEILQVPSYLQTAVEK 411 >gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1 [Homo sapiens] Length = 2671 Score = 34.3 bits (77), Expect = 0.62 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Query: 909 PELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSM 968 P++ +++ L+ ALS P VQ S SCL PL+ + + L+ + L S Sbjct: 1335 PKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLL---ESDKY 1391 Query: 969 AVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKE 1014 A R A + L + +L + +++ AL + DKK R+E Sbjct: 1392 AERKGAAYGLAGLVK-GLGILSLKQQEMMAALTDAIQDKKNFRRRE 1436 >gi|157388904 HEAT repeat containing 2 [Homo sapiens] Length = 855 Score = 33.5 bits (75), Expect = 1.1 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 907 LLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSP 966 L P L L L +L P V+ + SC L P + ++L+ + S Sbjct: 160 LAPHLDDALRALRCSLLDPFAAVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQ 219 Query: 967 SMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFL 1024 VR+AA++ A+ + V+ A+ L D VR+ S G W L Sbjct: 220 HWKVRVAAIEATGAVIHFGNGKSV---DDVLSHFAQRLFDDVPQVRRAVASVVGGWLL 274 >gi|34485722 karyopherin alpha 3 [Homo sapiens] Length = 521 Score = 32.7 bits (73), Expect = 1.8 Identities = 61/271 (22%), Positives = 105/271 (38%), Gaps = 21/271 (7%) Query: 309 VFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHLCEPDMKLV 368 + Q A+ L+A+ + LS S +DL+ S + IL C P ++ Sbjct: 76 ILQNATSDNPVVQLSAVQAARKLLS-SDRNPPIDDLIKSGILPILVKCLERDDNPSLQFE 134 Query: 369 WPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTI--LEMLLGFLKLQQK 426 A L A+G SA+ V SN +PL L Q+ + + L ++G + Sbjct: 135 AAWA-LTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRD 193 Query: 427 WSYEDKDQRPLNGFKDQLCSLVFMALT-----------DPSTQLQLVGIRTLTVLGAQPD 475 + +PL F + F+ DP ++ V +L A Sbjct: 194 YVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETV----QEILPALCV 249 Query: 476 LLSYEDLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRV 535 L+ + D+ + V ++ LS+L D + ++ + SG + L P+ S V LR Sbjct: 250 LIYHTDINILVDTVWALSYL-TDGGNEQIQMVIDSGVVPFLVPL-LSHQEVKVQTAALRA 307 Query: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHP 566 + +T DE TQ + L + +HP Sbjct: 308 VGNIVTGTDEQTQVVLNCDVLSHFPNLLSHP 338 >gi|23510381 transportin 1 isoform 2 [Homo sapiens] Length = 890 Score = 32.3 bits (72), Expect = 2.4 Identities = 16/87 (18%), Positives = 37/87 (42%) Query: 929 VQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPV 988 ++ ++C+ ++ Q + LH+D+ + L+ VR + + L + Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249 Query: 989 LLPYKPQVIRALAKPLDDKKRLVRKEA 1015 LLP+ ++ + + D+ V EA Sbjct: 250 LLPHMHNIVEYMLQRTQDQDENVALEA 276 >gi|133925811 transportin 1 isoform 1 [Homo sapiens] Length = 898 Score = 32.3 bits (72), Expect = 2.4 Identities = 16/87 (18%), Positives = 37/87 (42%) Query: 929 VQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPV 988 ++ ++C+ ++ Q + LH+D+ + L+ VR + + L + Sbjct: 198 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 257 Query: 989 LLPYKPQVIRALAKPLDDKKRLVRKEA 1015 LLP+ ++ + + D+ V EA Sbjct: 258 LLPHMHNIVEYMLQRTQDQDENVALEA 284 >gi|55749742 HEAT repeat containing 5B [Homo sapiens] Length = 2071 Score = 32.3 bits (72), Expect = 2.4 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%) Query: 926 DCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985 D +VQ + +SCLQ L + AP+ ++L +LV S + +R AA+ C+ L + Sbjct: 1040 DSLVQAAAISCLQQLHMFAPRHVNL--SSLVPSLCVHLCSSHLLLRRAAVACLRQLAQRE 1097 Query: 986 TPVLLPYKPQVIRALAKPLDDKK 1008 + Y +LAK DK+ Sbjct: 1098 AAEVCEY----AMSLAKNTGDKE 1116 >gi|66773038 cell division cycle 37 homolog (S. cerevisiae)-like 1 [Homo sapiens] Length = 337 Score = 32.3 bits (72), Expect = 2.4 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 562 VSTHPSIV-KETLPLLLQ---HLWQVNRGNMVAQSSDVIAVCQSLRQMAEKCQQDPESCW 617 +S HP +V +ET L+ HL +G ++ Q + V Q + +MA+ C DP C+ Sbjct: 182 LSDHPYLVCEETAKYLILWCFHLEAEKKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCF 241 >gi|21361794 TIP120 protein [Homo sapiens] Length = 1230 Score = 31.6 bits (70), Expect = 4.0 Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 17/165 (10%) Query: 873 VPALVQGFHAAPQD----VKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALS--CPD 926 VP +V+ H ++ + L+ ++N LP L +P L+ ++ +L+ Sbjct: 432 VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG-ALTQHIPVLVPGIIFSLNDKSSS 490 Query: 927 CVVQLSTLSCLQPLLLE-APQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985 +++ LSCL +L +PQV HV LV + P + AL L ++ Sbjct: 491 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI 550 Query: 986 TPV-------LLPYKPQVIRALAKPLD--DKKRLVRKEAVSARGE 1021 P+ PY + K L D + V++ A+S G+ Sbjct: 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595 >gi|239754766 PREDICTED: hypothetical protein [Homo sapiens] Length = 359 Score = 31.2 bits (69), Expect = 5.3 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 19/104 (18%) Query: 818 SCLTARLMGLLSDPELGPAAADGFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALV 877 SC+ A L + SDP +GP++ G + + C ++ Q F D ++ Sbjct: 72 SCIPALLAPVSSDPMVGPSSPSGAEISVGPC--------------LWCQGFACDVSQLVL 117 Query: 878 QGFHAAPQDVKPNYLKGLSHVLNRLPKPVLL--PELPTLLSLLL 919 Q H + P + G + LP+ LL P PTL S LL Sbjct: 118 QTLHPLCPEDAPASVPGPA---PSLPRAGLLAAPSPPTLFSTLL 158 >gi|169171033 PREDICTED: hypothetical protein [Homo sapiens] Length = 359 Score = 31.2 bits (69), Expect = 5.3 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 19/104 (18%) Query: 818 SCLTARLMGLLSDPELGPAAADGFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALV 877 SC+ A L + SDP +GP++ G + + C ++ Q F D ++ Sbjct: 72 SCIPALLAPVSSDPMVGPSSPSGAEISVGPC--------------LWCQGFACDVSQLVL 117 Query: 878 QGFHAAPQDVKPNYLKGLSHVLNRLPKPVLL--PELPTLLSLLL 919 Q H + P + G + LP+ LL P PTL S LL Sbjct: 118 QTLHPLCPEDAPASVPGPA---PSLPRAGLLAAPSPPTLFSTLL 158 >gi|156151430 armadillo repeat containing 9 [Homo sapiens] Length = 665 Score = 31.2 bits (69), Expect = 5.3 Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 34/279 (12%) Query: 240 DLILSLRAVLAS---TPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACC---AVYGQKE 293 +L+ SL A ++ TP + + + L + L+ +D + A A + Sbjct: 247 ELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRASLAPVK 306 Query: 294 LKD--FLPSLWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSN 351 LKD LPSL ++ S+R++A L AL L+ S E +L +++SN Sbjct: 307 LKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWR---LTTSHPGEQRETVLQAYISN 363 Query: 352 ILQDCRHHLCEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRR 411 L DC H ++L+ ++ +++ A S+ L L +Q Sbjct: 364 DLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYL-----------AQNT 412 Query: 412 TILEMLLGFLKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDP--STQLQLVGIRTLTV 469 +L+ML G LK EDKD + ++ L +L +L P + +Q I L Sbjct: 413 KVLQMLEGRLK------EEDKD---IITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVD 463 Query: 470 LGAQPDLLSYEDLELAVGHLYRLSFLKEDSQSC-RVAAL 507 + PD LS LE +V L L C +VA L Sbjct: 464 VLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGL 502 >gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens] Length = 1740 Score = 30.8 bits (68), Expect = 6.9 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%) Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985 CVV LS S +E P ++ + LV K ++S++ SMAV + L+ + L RLP Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854 >gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] Length = 1807 Score = 30.8 bits (68), Expect = 6.9 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%) Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985 CVV LS S +E P ++ + LV K ++S++ SMAV + L+ + L RLP Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854 >gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens] Length = 1784 Score = 30.8 bits (68), Expect = 6.9 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%) Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985 CVV LS S +E P ++ + LV K ++S++ SMAV + L+ + L RLP Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854 >gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens] Length = 516 Score = 30.8 bits (68), Expect = 6.9 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 764 LLNKHPAGQQL---DEFLQLAVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCL 820 LL +HPA + L +L D + G P +S+A LW +AL YHP S Sbjct: 394 LLRRHPACRVLVHRPHGPELDADPYDPG-EEDPAQSRALESSLWELQALQRHYHPEVSKA 452 Query: 821 TARLMGLLSDPELGPA 836 + + LS PE+ A Sbjct: 453 ASVINQALSMPEVSIA 468 >gi|110624774 mannose receptor, C type 2 [Homo sapiens] Length = 1479 Score = 30.4 bits (67), Expect = 9.0 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Query: 487 GHLYRLSFLKEDSQSCRVAALEASGTLAALYPVA---FSSHLVPKLAEELRVGESNL 540 GH YRL K Q + A L G L +++ +A F + + + EEL +G ++L Sbjct: 391 GHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDL 447 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,826,608 Number of Sequences: 37866 Number of extensions: 1695343 Number of successful extensions: 4205 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 4168 Number of HSP's gapped (non-prelim): 51 length of query: 1030 length of database: 18,247,518 effective HSP length: 112 effective length of query: 918 effective length of database: 14,006,526 effective search space: 12857990868 effective search space used: 12857990868 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.