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Search of human proteins with 170763479
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|170763479 MMS19 nucleotide excision repair homolog [Homo
sapiens]
(1030 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapi... 2028 0.0
gi|150456415 HEAT repeat containing 5A [Homo sapiens] 39 0.033
gi|166295188 DEP domain containing 1 isoform a [Homo sapiens] 35 0.36
gi|38488716 DEP domain containing 1 isoform b [Homo sapiens] 35 0.36
gi|54607053 GCN1 general control of amino-acid synthesis 1-like ... 34 0.62
gi|157388904 HEAT repeat containing 2 [Homo sapiens] 33 1.1
gi|34485722 karyopherin alpha 3 [Homo sapiens] 33 1.8
gi|23510381 transportin 1 isoform 2 [Homo sapiens] 32 2.4
gi|133925811 transportin 1 isoform 1 [Homo sapiens] 32 2.4
gi|55749742 HEAT repeat containing 5B [Homo sapiens] 32 2.4
gi|66773038 cell division cycle 37 homolog (S. cerevisiae)-like ... 32 2.4
gi|21361794 TIP120 protein [Homo sapiens] 32 4.0
gi|239754766 PREDICTED: hypothetical protein [Homo sapiens] 31 5.3
gi|169171033 PREDICTED: hypothetical protein [Homo sapiens] 31 5.3
gi|156151430 armadillo repeat containing 9 [Homo sapiens] 31 5.3
gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens] 31 6.9
gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens] 31 6.9
gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens] 31 6.9
gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens] 31 6.9
gi|110624774 mannose receptor, C type 2 [Homo sapiens] 30 9.0
>gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapiens]
Length = 1030
Score = 2028 bits (5255), Expect = 0.0
Identities = 1030/1030 (100%), Positives = 1030/1030 (100%)
Query: 1 MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP 60
MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP
Sbjct: 1 MAAAAAVEAAAPMGALWGLVHDFVVGQQEGPADQVAADVKSGNYTVLQVVEALGSSLENP 60
Query: 61 EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV 120
EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV
Sbjct: 61 EPRTRARAIQLLSQVLLHCHTLLLEKEVVHLILFYENRLKDHHLVIPSVLQGLKALSLCV 120
Query: 121 ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV 180
ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV
Sbjct: 121 ALPPGLAVSVLKAIFQEVHVQSLPQVDRHTVYNIITNFMRTREEELKSLGADFTFGFIQV 180
Query: 181 MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED 240
MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED
Sbjct: 181 MDGEKDPRNLLVAFRIVHDLISRDYSLGPFVEELFEVTSCYFPIDFTPPPNDPHGIQRED 240
Query: 241 LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS 300
LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS
Sbjct: 241 LILSLRAVLASTPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACCAVYGQKELKDFLPS 300
Query: 301 LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL 360
LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL
Sbjct: 301 LWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHL 360
Query: 361 CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF 420
CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF
Sbjct: 361 CEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTILEMLLGF 420
Query: 421 LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE 480
LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE
Sbjct: 421 LKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDPSTQLQLVGIRTLTVLGAQPDLLSYE 480
Query: 481 DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL 540
DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL
Sbjct: 481 DLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRVGESNL 540
Query: 541 TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ 600
TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ
Sbjct: 541 TNGDEPTQCSRHLCCLQALSAVSTHPSIVKETLPLLLQHLWQVNRGNMVAQSSDVIAVCQ 600
Query: 601 SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV 660
SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV
Sbjct: 601 SLRQMAEKCQQDPESCWYFHQTAIPCLLALAVQASMPEKEPSVLRKVLLEDEVLAAMVSV 660
Query: 661 IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA 720
IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA
Sbjct: 661 IGTATTHLSPELAAQSVTHIVPLFLDGNVSFLPENSFPSRFQPFQDGSSGQRRLIALLMA 720
Query: 721 FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL 780
FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL
Sbjct: 721 FVCSLPRNVEIPQLNQLMRELLELSCCHSCPFSSTAAAKCFAGLLNKHPAGQQLDEFLQL 780
Query: 781 AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG 840
AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG
Sbjct: 781 AVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCLTARLMGLLSDPELGPAAADG 840
Query: 841 FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN 900
FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN
Sbjct: 841 FSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALVQGFHAAPQDVKPNYLKGLSHVLN 900
Query: 901 RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL 960
RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL
Sbjct: 901 RLPKPVLLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFL 960
Query: 961 NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG 1020
NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG
Sbjct: 961 NLSSSPSMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARG 1020
Query: 1021 EWFLLGSPGS 1030
EWFLLGSPGS
Sbjct: 1021 EWFLLGSPGS 1030
>gi|150456415 HEAT repeat containing 5A [Homo sapiens]
Length = 1753
Score = 38.5 bits (88), Expect = 0.033
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 925 PDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTR 983
PDC+VQ +SCLQ L + AP+ ++L +LV+ SP + +R A L C+ L +
Sbjct: 750 PDCLVQAQAISCLQQLHMFAPRHVNL--SSLVSCLCVNLCSPYLLLRRAVLACLRQLVQ 806
>gi|166295188 DEP domain containing 1 isoform a [Homo sapiens]
Length = 811
Score = 35.0 bits (79), Expect = 0.36
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 712 RRLIALLMAFVCSLPRNVEIPQLNQLM--RELL-------ELSCCHSCPFSSTAAAKCFA 762
RR + LLM + + +NV++P+L+ M R L+ L C A + +
Sbjct: 614 RRKLQLLMRMISRMSQNVDMPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVS 673
Query: 763 GLLNKHPAGQQLDEFLQLAVDK 784
L++ H Q+ +LQ AV+K
Sbjct: 674 FLMDHHQEILQVPSYLQTAVEK 695
>gi|38488716 DEP domain containing 1 isoform b [Homo sapiens]
Length = 527
Score = 35.0 bits (79), Expect = 0.36
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 712 RRLIALLMAFVCSLPRNVEIPQLNQLM--RELL-------ELSCCHSCPFSSTAAAKCFA 762
RR + LLM + + +NV++P+L+ M R L+ L C A + +
Sbjct: 330 RRKLQLLMRMISRMSQNVDMPKLHDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVS 389
Query: 763 GLLNKHPAGQQLDEFLQLAVDK 784
L++ H Q+ +LQ AV+K
Sbjct: 390 FLMDHHQEILQVPSYLQTAVEK 411
>gi|54607053 GCN1 general control of amino-acid synthesis 1-like 1
[Homo sapiens]
Length = 2671
Score = 34.3 bits (77), Expect = 0.62
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 909 PELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSM 968
P++ +++ L+ ALS P VQ S SCL PL+ + + L+ + L S
Sbjct: 1335 PKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLL---ESDKY 1391
Query: 969 AVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKE 1014
A R A + L + +L + +++ AL + DKK R+E
Sbjct: 1392 AERKGAAYGLAGLVK-GLGILSLKQQEMMAALTDAIQDKKNFRRRE 1436
>gi|157388904 HEAT repeat containing 2 [Homo sapiens]
Length = 855
Score = 33.5 bits (75), Expect = 1.1
Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 907 LLPELPTLLSLLLEALSCPDCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSP 966
L P L L L +L P V+ + SC L P + ++L+ + S
Sbjct: 160 LAPHLDDALRALRCSLLDPFAAVRRESCSCAAALAQATPDHFHMQSESLIGPLMQTISHQ 219
Query: 967 SMAVRIAALQCMHALTRLPTPVLLPYKPQVIRALAKPLDDKKRLVRKEAVSARGEWFL 1024
VR+AA++ A+ + V+ A+ L D VR+ S G W L
Sbjct: 220 HWKVRVAAIEATGAVIHFGNGKSV---DDVLSHFAQRLFDDVPQVRRAVASVVGGWLL 274
>gi|34485722 karyopherin alpha 3 [Homo sapiens]
Length = 521
Score = 32.7 bits (73), Expect = 1.8
Identities = 61/271 (22%), Positives = 105/271 (38%), Gaps = 21/271 (7%)
Query: 309 VFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSNILQDCRHHLCEPDMKLV 368
+ Q A+ L+A+ + LS S +DL+ S + IL C P ++
Sbjct: 76 ILQNATSDNPVVQLSAVQAARKLLS-SDRNPPIDDLIKSGILPILVKCLERDDNPSLQFE 134
Query: 369 WPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRRTI--LEMLLGFLKLQQK 426
A L A+G SA+ V SN +PL L Q+ + + L ++G +
Sbjct: 135 AAWA-LTNIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRD 193
Query: 427 WSYEDKDQRPLNGFKDQLCSLVFMALT-----------DPSTQLQLVGIRTLTVLGAQPD 475
+ +PL F + F+ DP ++ V +L A
Sbjct: 194 YVISLGVVKPLLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETV----QEILPALCV 249
Query: 476 LLSYEDLELAVGHLYRLSFLKEDSQSCRVAALEASGTLAALYPVAFSSHLVPKLAEELRV 535
L+ + D+ + V ++ LS+L D + ++ + SG + L P+ S V LR
Sbjct: 250 LIYHTDINILVDTVWALSYL-TDGGNEQIQMVIDSGVVPFLVPL-LSHQEVKVQTAALRA 307
Query: 536 GESNLTNGDEPTQCSRHLCCLQALSAVSTHP 566
+ +T DE TQ + L + +HP
Sbjct: 308 VGNIVTGTDEQTQVVLNCDVLSHFPNLLSHP 338
>gi|23510381 transportin 1 isoform 2 [Homo sapiens]
Length = 890
Score = 32.3 bits (72), Expect = 2.4
Identities = 16/87 (18%), Positives = 37/87 (42%)
Query: 929 VQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPV 988
++ ++C+ ++ Q + LH+D+ + L+ VR + + L +
Sbjct: 190 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 249
Query: 989 LLPYKPQVIRALAKPLDDKKRLVRKEA 1015
LLP+ ++ + + D+ V EA
Sbjct: 250 LLPHMHNIVEYMLQRTQDQDENVALEA 276
>gi|133925811 transportin 1 isoform 1 [Homo sapiens]
Length = 898
Score = 32.3 bits (72), Expect = 2.4
Identities = 16/87 (18%), Positives = 37/87 (42%)
Query: 929 VQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLPTPV 988
++ ++C+ ++ Q + LH+D+ + L+ VR + + L +
Sbjct: 198 IRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR 257
Query: 989 LLPYKPQVIRALAKPLDDKKRLVRKEA 1015
LLP+ ++ + + D+ V EA
Sbjct: 258 LLPHMHNIVEYMLQRTQDQDENVALEA 284
>gi|55749742 HEAT repeat containing 5B [Homo sapiens]
Length = 2071
Score = 32.3 bits (72), Expect = 2.4
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 926 DCVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
D +VQ + +SCLQ L + AP+ ++L +LV S + +R AA+ C+ L +
Sbjct: 1040 DSLVQAAAISCLQQLHMFAPRHVNL--SSLVPSLCVHLCSSHLLLRRAAVACLRQLAQRE 1097
Query: 986 TPVLLPYKPQVIRALAKPLDDKK 1008
+ Y +LAK DK+
Sbjct: 1098 AAEVCEY----AMSLAKNTGDKE 1116
>gi|66773038 cell division cycle 37 homolog (S. cerevisiae)-like 1
[Homo sapiens]
Length = 337
Score = 32.3 bits (72), Expect = 2.4
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 562 VSTHPSIV-KETLPLLLQ---HLWQVNRGNMVAQSSDVIAVCQSLRQMAEKCQQDPESCW 617
+S HP +V +ET L+ HL +G ++ Q + V Q + +MA+ C DP C+
Sbjct: 182 LSDHPYLVCEETAKYLILWCFHLEAEKKGALMEQIAHQAVVMQFIMEMAKNCNVDPRGCF 241
>gi|21361794 TIP120 protein [Homo sapiens]
Length = 1230
Score = 31.6 bits (70), Expect = 4.0
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 17/165 (10%)
Query: 873 VPALVQGFHAAPQD----VKPNYLKGLSHVLNRLPKPVLLPELPTLLSLLLEALS--CPD 926
VP +V+ H ++ + L+ ++N LP L +P L+ ++ +L+
Sbjct: 432 VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG-ALTQHIPVLVPGIIFSLNDKSSS 490
Query: 927 CVVQLSTLSCLQPLLLE-APQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
+++ LSCL +L +PQV HV LV + P + AL L ++
Sbjct: 491 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI 550
Query: 986 TPV-------LLPYKPQVIRALAKPLD--DKKRLVRKEAVSARGE 1021
P+ PY + K L D + V++ A+S G+
Sbjct: 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 595
>gi|239754766 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 31.2 bits (69), Expect = 5.3
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 19/104 (18%)
Query: 818 SCLTARLMGLLSDPELGPAAADGFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALV 877
SC+ A L + SDP +GP++ G + + C ++ Q F D ++
Sbjct: 72 SCIPALLAPVSSDPMVGPSSPSGAEISVGPC--------------LWCQGFACDVSQLVL 117
Query: 878 QGFHAAPQDVKPNYLKGLSHVLNRLPKPVLL--PELPTLLSLLL 919
Q H + P + G + LP+ LL P PTL S LL
Sbjct: 118 QTLHPLCPEDAPASVPGPA---PSLPRAGLLAAPSPPTLFSTLL 158
>gi|169171033 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 31.2 bits (69), Expect = 5.3
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 19/104 (18%)
Query: 818 SCLTARLMGLLSDPELGPAAADGFSLLMSDCTDVLTRAGHAEVRIMFRQRFFTDNVPALV 877
SC+ A L + SDP +GP++ G + + C ++ Q F D ++
Sbjct: 72 SCIPALLAPVSSDPMVGPSSPSGAEISVGPC--------------LWCQGFACDVSQLVL 117
Query: 878 QGFHAAPQDVKPNYLKGLSHVLNRLPKPVLL--PELPTLLSLLL 919
Q H + P + G + LP+ LL P PTL S LL
Sbjct: 118 QTLHPLCPEDAPASVPGPA---PSLPRAGLLAAPSPPTLFSTLL 158
>gi|156151430 armadillo repeat containing 9 [Homo sapiens]
Length = 665
Score = 31.2 bits (69), Expect = 5.3
Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 34/279 (12%)
Query: 240 DLILSLRAVLAS---TPRFAEFLLPLLIEKVDSEVLSAKLDSLQTLNACC---AVYGQKE 293
+L+ SL A ++ TP + + + L + L+ +D + A A +
Sbjct: 247 ELVDSLEATVSGKMITPEYLQSVCVRLFSNQMRQSLAHSVDFTRPGTASTMLRASLAPVK 306
Query: 294 LKD--FLPSLWASIRREVFQTASERVEAEGLAALHSLTACLSRSVLRADAEDLLDSFLSN 351
LKD LPSL ++ S+R++A L AL L+ S E +L +++SN
Sbjct: 307 LKDVPLLPSLDYEKLKKDLILGSDRLKAFLLQALRWR---LTTSHPGEQRETVLQAYISN 363
Query: 352 ILQDCRHHLCEPDMKLVWPSAKLLQAAAGASARACDSVTSNVLPLLLEQFHKHSQSSQRR 411
L DC H ++L+ ++ +++ A S+ L L +Q
Sbjct: 364 DLLDCYSHNQRSVLQLLHSTSDVVRQYMARLINAFASLAEGRLYL-----------AQNT 412
Query: 412 TILEMLLGFLKLQQKWSYEDKDQRPLNGFKDQLCSLVFMALTDP--STQLQLVGIRTLTV 469
+L+ML G LK EDKD + ++ L +L +L P + +Q I L
Sbjct: 413 KVLQMLEGRLK------EEDKD---IITRENVLGALQKFSLRRPLQTAMIQDGLIFWLVD 463
Query: 470 LGAQPDLLSYEDLELAVGHLYRLSFLKEDSQSC-RVAAL 507
+ PD LS LE +V L L C +VA L
Sbjct: 464 VLKDPDCLSDYTLEYSVALLMNLCLRSTGKNMCAKVAGL 502
>gi|116256350 tuberous sclerosis 2 isoform 4 [Homo sapiens]
Length = 1740
Score = 30.8 bits (68), Expect = 6.9
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
CVV LS S +E P ++ + LV K ++S++ SMAV + L+ + L RLP
Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854
>gi|116256352 tuberous sclerosis 2 isoform 1 [Homo sapiens]
Length = 1807
Score = 30.8 bits (68), Expect = 6.9
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
CVV LS S +E P ++ + LV K ++S++ SMAV + L+ + L RLP
Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854
>gi|167412124 tuberous sclerosis 2 isoform 5 [Homo sapiens]
Length = 1784
Score = 30.8 bits (68), Expect = 6.9
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 927 CVVQLSTLSCLQPLLLEAPQVMSLHVDTLVTKFLNLSSSPSMAVRIAALQCMHALTRLP 985
CVV LS S +E P ++ + LV K ++S++ SMAV + L+ + L RLP
Sbjct: 804 CVVALSICS------VEMPDIIIKALPVLVVKLTHISATASMAVPL--LEFLSTLARLP 854
>gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens]
Length = 516
Score = 30.8 bits (68), Expect = 6.9
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 764 LLNKHPAGQQL---DEFLQLAVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCL 820
LL +HPA + L +L D + G P +S+A LW +AL YHP S
Sbjct: 394 LLRRHPACRVLVHRPHGPELDADPYDPG-EEDPAQSRALESSLWELQALQRHYHPEVSKA 452
Query: 821 TARLMGLLSDPELGPA 836
+ + LS PE+ A
Sbjct: 453 ASVINQALSMPEVSIA 468
>gi|110624774 mannose receptor, C type 2 [Homo sapiens]
Length = 1479
Score = 30.4 bits (67), Expect = 9.0
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 487 GHLYRLSFLKEDSQSCRVAALEASGTLAALYPVA---FSSHLVPKLAEELRVGESNL 540
GH YRL K Q + A L G L +++ +A F + + + EEL +G ++L
Sbjct: 391 GHCYRLQAEKRSWQESKKACLRGGGDLVSIHSMAELEFITKQIKQEVEELWIGLNDL 447
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,826,608
Number of Sequences: 37866
Number of extensions: 1695343
Number of successful extensions: 4205
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 4168
Number of HSP's gapped (non-prelim): 51
length of query: 1030
length of database: 18,247,518
effective HSP length: 112
effective length of query: 918
effective length of database: 14,006,526
effective search space: 12857990868
effective search space used: 12857990868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.