Guide to the Human Genome
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Name: HEATR5A Sequence: fasta or formatted (1753aa) NCBI GI: 150456415
Description:

HEAT repeat containing 5A

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5        167           3
 C cysteine            3.0         52           2
 D aspartate           4.6         80           2
 E glutamate           5.8        101           3
 F phenylalanine       2.5         44           2
 G glycine             5.1         90           2
 H histidine           2.7         48           2
 I isoleucine          5.1         90           2
 K lysine              4.3         76           2
 L leucine            15.0        263           3
 M methionine          1.5         27           1
 N asparagine          2.2         39           1
 P proline             4.7         83           2
 Q glutamine           4.2         74           2
 R arginine            4.3         75           2
 S serine              9.1        160           3
 T threonine           6.2        108           3
 V valine              7.2        126           2
 W tryptophan          1.0         18           1
 Y tyrosine            1.8         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   HEAT repeat containing 5A 
HEATR5B               0.567   HEAT repeat containing 5B 
MMS19                 0.004   MMS19 nucleotide excision repair homolog 
CAND2                 0.004   TBP-interacting protein isoform 1 
HEATR1                0.003   protein BAP28 
LRRK1                 0.002   leucine-rich repeat kinase 1 
FRYL                  0.002   furry-like 
SYNE2                 0.002   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.002   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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