Guide to the Human Genome
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Name: KPNA3 Sequence: fasta or formatted (521aa) NCBI GI: 34485722
Description:

karyopherin alpha 3

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         36           2
 C cysteine            1.7          9           1
 D aspartate           6.5         34           2
 E glutamate           6.5         34           2
 F phenylalanine       3.1         16           1
 G glycine             4.6         24           2
 H histidine           1.9         10           1
 I isoleucine          7.9         41           2
 K lysine              4.8         25           2
 L leucine            10.6         55           2
 M methionine          1.2          6           1
 N asparagine          6.5         34           1
 P proline             5.4         28           4
 Q glutamine           6.7         35           3
 R arginine            3.5         18           2
 S serine              5.8         30           2
 T threonine           4.8         25           1
 V valine              9.2         48           2
 W tryptophan          1.2          6           1
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   karyopherin alpha 3 
KPNA4                 0.871   karyopherin alpha 4 
KPNA2                 0.469   karyopherin alpha 2 
KPNA5                 0.445   karyopherin alpha 5 
KPNA6                 0.438   karyopherin alpha 6 
KPNA1                 0.433   karyopherin alpha 1 
KPNA7                 0.398   karyopherin 7 
SPAG6                 0.047   sperm associated antigen 6 isoform 1 
SPAG6                 0.047   sperm associated antigen 6 isoform 2 
ARMC3                 0.025   armadillo repeat containing 3 
TMCO6                 0.025   transmembrane and coiled-coil domains 6 
ANKAR                 0.023   ankyrin and armadillo repeat containing 
ARMC8                 0.022   armadillo repeat containing 8 isoform 2 
TRIP12                0.015   thyroid hormone receptor interactor 12 
ARMC5                 0.012   armadillo repeat containing 5 isoform b 
ARMC5                 0.012   armadillo repeat containing 5 isoform a 
CTNNB1                0.011   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.011   catenin (cadherin-associated protein), beta 1, 88kD...
CTNNB1                0.011   catenin (cadherin-associated protein), beta 1, 88kDa ...
CTNND1                0.011   catenin, delta 1 isoform 3A 
CTNND1                0.011   catenin, delta 1 isoform 3A 
CTNND1                0.011   catenin, delta 1 isoform 3A 
CTNND1                0.011   catenin, delta 1 isoform 3AC 
CTNND1                0.011   catenin, delta 1 isoform 3B 
CTNND1                0.011   catenin, delta 1 isoform 3AB 
CTNND1                0.011   catenin, delta 1 isoform 3ABC 
CTNND1                0.011   catenin, delta 1 isoform 1A 
CTNND1                0.011   catenin, delta 1 isoform 1A 
CTNND1                0.011   catenin, delta 1 isoform 1A 
CTNND1                0.011   catenin, delta 1 isoform 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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