Guide to the Human Genome
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Name: LOC100292133 Sequence: fasta or formatted (416aa) NCBI GI: 239753698
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         45           3
 C cysteine            2.4         10           1
 D aspartate           1.9          8           2
 E glutamate           5.5         23           2
 F phenylalanine       2.4         10           2
 G glycine             8.2         34           2
 H histidine           2.9         12           1
 I isoleucine          1.4          6           1
 K lysine              4.1         17           2
 L leucine             7.5         31           2
 M methionine          0.2          1           1
 N asparagine          0.7          3           1
 P proline            11.3         47           2
 Q glutamine           3.8         16           1
 R arginine           16.1         67           3
 S serine              9.1         38           2
 T threonine           6.5         27           1
 V valine              3.8         16           1
 W tryptophan          1.0          4           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294354          1.000   PREDICTED: hypothetical protein 
FLJ37078              0.041   hypothetical protein LOC222183 
SRRM2                 0.035   splicing coactivator subunit SRm300 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
SRRM1                 0.032   serine/arginine repetitive matrix 1 
C2orf16               0.029   hypothetical protein LOC84226 
LOC100130360          0.027   PREDICTED: hypothetical protein 
SON                   0.027   SON DNA-binding protein isoform F 
SON                   0.027   SON DNA-binding protein isoform B 
BBC3                  0.025   BCL2 binding component 3 isoform 1 
PHRF1                 0.025   PHD and ring finger domains 1 
CCDC80                0.024   steroid-sensitive protein 1 
CCDC80                0.024   steroid-sensitive protein 1 
LOC729506             0.024   PREDICTED: hypothetical protein 
PRPF4B                0.024   serine/threonine-protein kinase PRP4K 
DACT3                 0.024   thymus expressed gene 3-like 
LOC729506             0.024   PREDICTED: hypothetical protein 
LOC729506             0.024   PREDICTED: hypothetical protein 
RUSC2                 0.024   RUN and SH3 domain containing 2 
RUSC2                 0.024   RUN and SH3 domain containing 2 
LOC100128398          0.023   PREDICTED: hypothetical protein 
LOC100128398          0.023   PREDICTED: hypothetical protein 
LOC100128398          0.023   PREDICTED: hypothetical protein 
LOC441086             0.023   PREDICTED: hypothetical protein 
ZNF469                0.023   zinc finger protein 469 
MAP7D1                0.023   MAP7 domain containing 1 
FLJ22184              0.023   PREDICTED: hypothetical protein FLJ22184 
VGF                   0.023   VGF nerve growth factor inducible precursor 
LOC100170229          0.022   hypothetical protein LOC100170229 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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