Guide to the Human Genome
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Name: LOC100128256 Sequence: fasta or formatted (240aa) NCBI GI: 169212746
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {240aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         15           2
 C cysteine            0.8          2           1
 D aspartate          10.8         26           1
 E glutamate           5.4         13           2
 F phenylalanine       3.8          9           1
 G glycine            15.0         36           2
 H histidine           2.9          7           1
 I isoleucine          4.2         10           2
 K lysine              2.1          5           1
 L leucine             7.9         19           2
 M methionine          0.4          1           1
 N asparagine          1.7          4           1
 P proline             4.2         10           1
 Q glutamine           7.1         17           1
 R arginine            6.7         16           2
 S serine             14.2         34           2
 T threonine           3.8          9           1
 V valine              2.5          6           1
 W tryptophan          0.4          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128256          1.000   PREDICTED: hypothetical protein 
TAF15                 0.054   TBP-associated factor 15 isoform 2 
TAF15                 0.054   TBP-associated factor 15 isoform 1 
DMKN                  0.037   dermokine isoform 4 precursor 
DMKN                  0.037   dermokine isoform 5 precursor 
DMKN                  0.037   dermokine isoform 3 precursor 
DMKN                  0.037   dermokine isoform 2 precursor 
LOC100286952          0.033   PREDICTED: hypothetical protein XP_002344252 
DSPP                  0.031   dentin sialophosphoprotein preproprotein 
LEO1                  0.031   Leo1, Paf1/RNA polymerase II complex component, homo...
KRT10                 0.031   keratin 10 
KRT24                 0.028   keratin 24 
RBMXL3                0.026   RNA binding motif protein, X-linked-like 3 
ACRC                  0.024   ACRC protein 
HCLS1                 0.022   hematopoietic cell-specific Lyn substrate 1 
FUS                   0.022   fusion (involved in t(12;16) in malignant liposarcoma...
TNRC18                0.022   trinucleotide repeat containing 18 
IRS4                  0.020   insulin receptor substrate 4 
KRT9                  0.020   keratin 9 
FAM98A                0.020   hypothetical protein LOC25940 
FLG                   0.017   filaggrin 
PMS2                  0.017   PMS2 postmeiotic segregation increased 2 isoform a [H...
KRT2                  0.017   keratin 2 
LOR                   0.017   loricrin 
LOC100128084          0.015   PREDICTED: hypothetical protein 
FSCB                  0.015   fibrous sheath CABYR binding protein 
FMN1                  0.013   formin 1 
HNRNPA1               0.013   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA3               0.013   heterogeneous nuclear ribonucleoprotein A3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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