Guide to the Human Genome
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Search of human proteins with 169211959

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169211959 PREDICTED: hypothetical protein [Homo sapiens]
         (115 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169211554 PREDICTED: hypothetical protein [Homo sapiens]           236   3e-63
gi|169211959 PREDICTED: hypothetical protein [Homo sapiens]           236   3e-63
gi|169211178 PREDICTED: hypothetical protein [Homo sapiens]           232   4e-62
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]            35   0.013
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo...    34   0.022
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo...    34   0.022
gi|222352122 hypothetical protein LOC284297 [Homo sapiens]             34   0.028
gi|239754597 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|239749137 PREDICTED: hypothetical protein XP_002346922 [Homo ...    33   0.037
gi|239743209 PREDICTED: hypothetical protein XP_002342803 [Homo ...    33   0.037
gi|239508884 PREDICTED: hypothetical protein [Homo sapiens]            33   0.037
gi|7705558 inositol-3-phosphate synthase 1 [Homo sapiens]              33   0.037
gi|62955044 F-box protein 42 [Homo sapiens]                            33   0.049
gi|241982780 programmed cell death 6 interacting protein isoform...    33   0.063
gi|22027538 programmed cell death 6 interacting protein isoform ...    33   0.063
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]            33   0.063
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]      32   0.083
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]       32   0.083
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              32   0.083
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]    32   0.083
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]    32   0.083
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]    32   0.083
gi|150170729 microtubule associated serine/threonine kinase 3 [H...    32   0.11 
gi|50233787 nuclear protein in testis [Homo sapiens]                   32   0.14 
gi|239749936 PREDICTED: similar to single Ig IL-1R-related molec...    31   0.18 
gi|239757256 PREDICTED: hypothetical protein XP_002345223 [Homo ...    31   0.24 
gi|239751761 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo ...    31   0.24 

>gi|169211554 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score =  236 bits (602), Expect = 3e-63
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
           MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP
Sbjct: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60

Query: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS 115
           LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS
Sbjct: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS 115


>gi|169211959 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score =  236 bits (602), Expect = 3e-63
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
           MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP
Sbjct: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60

Query: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS 115
           LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS
Sbjct: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS 115


>gi|169211178 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 115

 Score =  232 bits (592), Expect = 4e-62
 Identities = 114/115 (99%), Positives = 114/115 (99%)

Query: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
           MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACS DPFRKELPP
Sbjct: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSLDPFRKELPP 60

Query: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS 115
           LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS
Sbjct: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKTPS 115


>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 318

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
           +NRS S  +  GN L KR W +   +        G P P      G AC       E+  
Sbjct: 213 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 252

Query: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
             A    A  R  PC S P A G  +     L  PL A LT
Sbjct: 253 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 293


>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 318

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
           +NRS S  +  GN L KR W +   +        G P P      G AC       E+  
Sbjct: 213 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 252

Query: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
             A    A  R  PC S P A G  +     L  PL A LT
Sbjct: 253 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 293


>gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 268

 Score = 35.0 bits (79), Expect = 0.013
 Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)

Query: 1   MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
           +NRS S  +  GN L KR W +   +        G P P      G AC       E+  
Sbjct: 163 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 202

Query: 61  LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
             A    A  R  PC S P A G  +     L  PL A LT
Sbjct: 203 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 243


>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
           sapiens]
          Length = 870

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 25  AVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPPLSAATDTAPSRAAPCPSTPGAAGR 84
           A+++ ++R E  PA     + G + SP P R++ PP   AT    S      S   AAGR
Sbjct: 626 ALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSA-AAAGR 684

Query: 85  ANNKEPP 91
           A +  PP
Sbjct: 685 APSPPPP 691


>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
           sapiens]
          Length = 865

 Score = 34.3 bits (77), Expect = 0.022
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 25  AVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPPLSAATDTAPSRAAPCPSTPGAAGR 84
           A+++ ++R E  PA     + G + SP P R++ PP   AT    S      S   AAGR
Sbjct: 621 ALYARVARREARPARARGEIGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSA-AAAGR 679

Query: 85  ANNKEPP 91
           A +  PP
Sbjct: 680 APSPPPP 686


>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
          Length = 1573

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 38   APHTVSVTGAACSP-DPFRKELPPLSAATDTAPSRAAPCPS-TPGAAGRA 85
            +P T+ V G   SP  P+ +  PP  AAT TAP   +P PS +PG  G A
Sbjct: 972  SPPTLRVHGDTGSPRKPWPERRPPRPAATRTAPPTPSPGPSASPGPPGPA 1021


>gi|239754597 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 12  GNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRK---ELPPLSAATDTA 68
           G   Q R    +SA    +S   G P+P +      +C    FR    + PP + AT  +
Sbjct: 55  GRRFQNRPRLLRSAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPPGAGATQRS 114

Query: 69  PSRAAPCPSTPGAAGRANNKEP 90
           P+   P  + P    R    EP
Sbjct: 115 PATWRPARTQPPGGVRPREPEP 136


>gi|239749137 PREDICTED: hypothetical protein XP_002346922 [Homo
           sapiens]
          Length = 170

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 12  GNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRK---ELPPLSAATDTA 68
           G   Q R    +SA    +S   G P+P +      +C    FR    + PP + AT  +
Sbjct: 55  GRRFQNRPRLLRSAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPPGAGATQRS 114

Query: 69  PSRAAPCPSTPGAAGRANNKEP 90
           P+   P  + P    R    EP
Sbjct: 115 PATWRPARTQPPGGVRPREPEP 136


>gi|239743209 PREDICTED: hypothetical protein XP_002342803 [Homo
           sapiens]
          Length = 170

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 12  GNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRK---ELPPLSAATDTA 68
           G   Q R    +SA    +S   G P+P +      +C    FR    + PP + AT  +
Sbjct: 55  GRRFQNRPRLLRSAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPPGAGATQRS 114

Query: 69  PSRAAPCPSTPGAAGRANNKEP 90
           P+   P  + P    R    EP
Sbjct: 115 PATWRPARTQPPGGVRPREPEP 136


>gi|239508884 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 12  GNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRK---ELPPLSAATDTA 68
           G   Q R    +SA    +S   G P+P +      +C    FR    + PP + AT  +
Sbjct: 55  GRRFQNRPRLLRSAAAPPLSHLAGTPSPASRIALSLSCQASQFRTAWHQEPPGAGATQRS 114

Query: 69  PSRAAPCPSTPGAAGRANNKEP 90
           P+   P  + P    R    EP
Sbjct: 115 PATWRPARTQPPGGVRPREPEP 136


>gi|7705558 inositol-3-phosphate synthase 1 [Homo sapiens]
          Length = 558

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 12  GNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPPLSAATDTAPSR 71
           G+ +    + Q+S + +++    GLP  + + +      P P  K + P+ AAT    ++
Sbjct: 472 GSPVVNALFRQRSCIENILRACVGLPPQNHMLLEHKMERPGPSLKRVGPV-AATYPMLNK 530

Query: 72  AAPCPS-TPGAAGRAN---NKEPPLP 93
             P P+ T G  G AN    +EPP+P
Sbjct: 531 KGPVPAATNGCTGDANGHLQEEPPMP 556


>gi|62955044 F-box protein 42 [Homo sapiens]
          Length = 717

 Score = 33.1 bits (74), Expect = 0.049
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 39  PHTVSVTGAACSPDPFRKELPPLSAATDTAPSRAA-------PCPSTPGAAGRANNKEPP 91
           PH  S    A SP   R+ L  + A +   PS +A         P +PG+   ++ +  P
Sbjct: 541 PHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPPLGSSPGSPGSQSLSSGETVP 600

Query: 92  LP 93
           +P
Sbjct: 601 IP 602


>gi|241982780 programmed cell death 6 interacting protein isoform 2
           [Homo sapiens]
          Length = 873

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 37  PAPHTVSVTGAACSPDPFRKELPPLSAATDTAPS-----RAAPCPS-TPGAAGRANNKEP 90
           PAP T+  T       P    LP   A + TAPS      AAP PS TPG+A     + P
Sbjct: 747 PAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAPSQTPGSAPPPQAQGP 806

Query: 91  PLP 93
           P P
Sbjct: 807 PYP 809


>gi|22027538 programmed cell death 6 interacting protein isoform 1
           [Homo sapiens]
          Length = 868

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 37  PAPHTVSVTGAACSPDPFRKELPPLSAATDTAPS-----RAAPCPS-TPGAAGRANNKEP 90
           PAP T+  T       P    LP   A + TAPS      AAP PS TPG+A     + P
Sbjct: 742 PAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAPSQTPGSAPPPQAQGP 801

Query: 91  PLP 93
           P P
Sbjct: 802 PYP 804


>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 322

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 59  PPLSAATDTAPSRAAPCPS-TPGAAGRANNKEPPLPLLADL 98
           PP + AT +A SR  P P+  P  A  A+   PPLP+L  L
Sbjct: 183 PPAAPATGSAQSRPRPAPARAPLIAPGAHQSAPPLPVLGRL 223


>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
          Length = 733

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 56  KELPPLSAATDT--APSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKT 113
           K+ PP SAA +   A     P P +P +AG A  KEPPL L    +L  + F  L++   
Sbjct: 246 KKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLAL---PSLPPLPFQKLEEAAP 302

Query: 114 PS 115
           PS
Sbjct: 303 PS 304


>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
          Length = 714

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 56  KELPPLSAATDT--APSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQVVLFWDLQQQKT 113
           K+ PP SAA +   A     P P +P +AG A  KEPPL L    +L  + F  L++   
Sbjct: 227 KKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLAL---PSLPPLPFQKLEEAAP 283

Query: 114 PS 115
           PS
Sbjct: 284 PS 285


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 23  KSAVFSVISRAEGLPA--PHTVSVTGAACSPDPFRKELPPLSAATDTAPSRAAPCPSTPG 80
           + A FSV S     P+  P  VS   A+ S     +  PP S     AP   AP  S PG
Sbjct: 791 EEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQPPGSPDPPPAPPAPAPASSAPG 850

Query: 81  AAGRANNKEP 90
              +   KEP
Sbjct: 851 HVAKLPQKEP 860



 Score = 26.9 bits (58), Expect = 3.5
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 36  LPAPHTVSVT----GAACSPDPFRKELPPLSAATDTAPSRAAPCPSTPGAAGRANNKEPP 91
           LP P T   +     A C P+P    +P LS      P R+     +P +   + +  P 
Sbjct: 533 LPRPPTTGGSEGAGAAPCPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPT 592

Query: 92  LP 93
           LP
Sbjct: 593 LP 594


>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo
          sapiens]
          Length = 170

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 46 GAACSPDPFR---KELPPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLP 93
          GAA SP+P R   +  PP  A    APSR  PC   P AA  A  +EP  P
Sbjct: 30 GAAASPEPARAPPEPAPPAEATGAPAPSR--PCAPEP-AASPAGPEEPGEP 77


>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo
          sapiens]
          Length = 177

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 46 GAACSPDPFR---KELPPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLP 93
          GAA SP+P R   +  PP  A    APSR  PC   P AA  A  +EP  P
Sbjct: 30 GAAASPEPARAPPEPAPPAEATGAPAPSR--PCAPEP-AASPAGPEEPGEP 77


>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo
          sapiens]
          Length = 204

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 23/51 (45%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 46 GAACSPDPFR---KELPPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLP 93
          GAA SP+P R   +  PP  A    APSR  PC   P AA  A  +EP  P
Sbjct: 30 GAAASPEPARAPPEPAPPAEATGAPAPSR--PCAPEP-AASPAGPEEPGEP 77


>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
            sapiens]
          Length = 1309

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 24   SAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPPLSAATDTAPSRAAPCPSTPGAAG 83
            S +   +S +E LP   T S++ +  +P   R   P + A T  +P  A+P  S+P +  
Sbjct: 1094 SGLHHSLSSSESLPGSPTHSLSPSPTTP--CRSPAPDVPADTTASPPSASPSSSSPASPA 1151

Query: 84   RANNKEP 90
             A +  P
Sbjct: 1152 AAGHTRP 1158


>gi|50233787 nuclear protein in testis [Homo sapiens]
          Length = 1132

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 18/47 (38%), Positives = 18/47 (38%)

Query: 33 AEGLPAPHTVSVTGAACSPDPFRKELPPLSAATDTAPSRAAPCPSTP 79
          A  LP P       AA SP P    LPP S   D  P    P P  P
Sbjct: 6  ASALPGPDMSMKPSAALSPSPALPFLPPTSDPPDHPPREPPPQPIMP 52


>gi|239749936 PREDICTED: similar to single Ig IL-1R-related molecule
           [Homo sapiens]
          Length = 304

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 46  GAACSPDPFRKELPPLSAATDTAPSRAA---PCPSTPGAAGRANNK---EPPLPLLADLT 99
           G A  P P R+ LP  SAA+  +  R A     P  PGA+ R+  +   EP   LL +L+
Sbjct: 54  GLATGPRPVRQRLPGSSAASSASLGRRAGRWAAPPPPGASPRSWQQVSGEPSADLLVNLS 113


>gi|239757256 PREDICTED: hypothetical protein XP_002345223 [Homo
           sapiens]
          Length = 113

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 59  PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101
           PP SA+ D++P    P PS   +A  A  K  P P ++ L L+
Sbjct: 66  PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108


>gi|239751761 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 59  PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101
           PP SA+ D++P    P PS   +A  A  K  P P ++ L L+
Sbjct: 66  PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108


>gi|239746261 PREDICTED: hypothetical protein XP_002343718 [Homo
           sapiens]
          Length = 113

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 59  PPLSAATDTAPSRAAPCPSTPGAAGRANNKEPPLPLLADLTLQ 101
           PP SA+ D++P    P PS   +A  A  K  P P ++ L L+
Sbjct: 66  PPGSASLDSSPGTELPVPSLASSAPLAPTKPHPRPRVSRLRLR 108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.128    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,137,451
Number of Sequences: 37866
Number of extensions: 270858
Number of successful extensions: 2444
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 192
Number of HSP's that attempted gapping in prelim test: 2110
Number of HSP's gapped (non-prelim): 528
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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