Guide to the Human Genome
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Name: LOC100289147 Sequence: fasta or formatted (113aa) NCBI GI: 239751761
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {113aa} PREDICTED: hypothetical protein XP_002343718
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         11           1
 C cysteine            0.0          0           0
 D aspartate           3.5          4           1
 E glutamate           0.9          1           1
 F phenylalanine       1.8          2           1
 G glycine             4.4          5           1
 H histidine           1.8          2           1
 I isoleucine          0.9          1           1
 K lysine              1.8          2           1
 L leucine            11.5         13           2
 M methionine          1.8          2           1
 N asparagine          2.7          3           1
 P proline            15.9         18           2
 Q glutamine           3.5          4           1
 R arginine           13.3         15           1
 S serine             13.3         15           2
 T threonine           6.2          7           1
 V valine              5.3          6           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291660          1.000   PREDICTED: hypothetical protein XP_002345223 
LOC100289147          1.000   PREDICTED: hypothetical protein XP_002343718 
LOC100293036          0.049   PREDICTED: hypothetical protein 
FAM53A                0.039   dorsal neural-tube nuclear protein 
JUND                  0.034   jun D proto-oncogene 
USP6NL                0.034   USP6 N-terminal like isoform 1 
USP6NL                0.034   USP6 N-terminal like isoform 2 
POGZ                  0.034   pogo transposable element with ZNF domain isoform 1 ...
POGZ                  0.034   pogo transposable element with ZNF domain isoform 2 ...
LOC100132955          0.034   PREDICTED: similar to Putative uncharacterized prot...
COL18A1               0.034   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.034   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.034   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
MAP4K2                0.034   mitogen-activated protein kinase kinase kinase kinas...
FCHSD1                0.034   FCH and double SH3 domains 1 
C6orf132              0.029   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.029   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.029   PREDICTED: hypothetical protein LOC647024 
NT5C1B                0.029   5' nucleotidase, cytosolic IB isoform 1 
NT5C1B                0.029   5' nucleotidase, cytosolic IB isoform 2 
OCEL1                 0.029   occludin/ELL domain containing 1 
LOC100128105          0.029   PREDICTED: hypothetical protein 
LOC100128105          0.029   PREDICTED: hypothetical protein 
LOC100128105          0.029   PREDICTED: hypothetical protein 
MTSS1L                0.029   metastasis suppressor 1-like 
MEF2A                 0.024   myocyte enhancer factor 2A isoform 4 
MEF2A                 0.024   myocyte enhancer factor 2A isoform 3 
MEF2A                 0.024   myocyte enhancer factor 2A isoform 2 
MEF2A                 0.024   myocyte enhancer factor 2A isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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