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Search of human proteins with 169211260
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169211260 PREDICTED: similar to hCG2042422 [Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169211260 PREDICTED: similar to hCG2042422 [Homo sapiens] 518 e-147
gi|169211653 PREDICTED: hypothetical protein [Homo sapiens] 518 e-147
gi|169210872 PREDICTED: similar to hCG2042422 [Homo sapiens] 518 e-147
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 39 0.003
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 39 0.003
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 38 0.009
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 37 0.012
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 37 0.015
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 37 0.015
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 37 0.015
gi|169169912 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|239749005 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|239743025 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|124107614 PR domain containing 13 [Homo sapiens] 36 0.026
gi|23510333 pygopus homolog 2 [Homo sapiens] 36 0.034
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 35 0.059
gi|139394646 iroquois homeobox protein 5 [Homo sapiens] 35 0.077
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 34 0.10
gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo ... 34 0.10
gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo ... 34 0.10
gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo ... 34 0.10
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 34 0.13
gi|41281612 zinc finger protein 828 [Homo sapiens] 33 0.17
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 33 0.22
gi|239756937 PREDICTED: hypothetical protein [Homo sapiens] 33 0.29
gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo ... 33 0.29
gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo ... 33 0.29
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 33 0.29
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 33 0.29
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 32 0.38
>gi|169211260 PREDICTED: similar to hCG2042422 [Homo sapiens]
Length = 242
Score = 518 bits (1335), Expect = e-147
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP 60
MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP
Sbjct: 1 MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP 60
Query: 61 EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR 120
EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR
Sbjct: 61 EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR 120
Query: 121 PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ 180
PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ
Sbjct: 121 PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ 180
Query: 181 PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF 240
PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF
Sbjct: 181 PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF 240
Query: 241 GG 242
GG
Sbjct: 241 GG 242
>gi|169211653 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 518 bits (1335), Expect = e-147
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP 60
MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP
Sbjct: 1 MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP 60
Query: 61 EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR 120
EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR
Sbjct: 61 EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR 120
Query: 121 PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ 180
PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ
Sbjct: 121 PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ 180
Query: 181 PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF 240
PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF
Sbjct: 181 PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF 240
Query: 241 GG 242
GG
Sbjct: 241 GG 242
>gi|169210872 PREDICTED: similar to hCG2042422 [Homo sapiens]
Length = 242
Score = 518 bits (1335), Expect = e-147
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP 60
MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP
Sbjct: 1 MSAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWP 60
Query: 61 EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR 120
EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR
Sbjct: 61 EGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWR 120
Query: 121 PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ 180
PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ
Sbjct: 121 PPSKVYKVTRMSAGRGGIGACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAFGNEVPQ 180
Query: 181 PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF 240
PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF
Sbjct: 181 PPTHCFGCLLHLKLYEGQEEGCGDEWLYRLATDGELEQPVAPRGGRKGGTADPTPAVPGF 240
Query: 241 GG 242
GG
Sbjct: 241 GG 242
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 39.3 bits (90), Expect = 0.003
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 2 SAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGL---------ARQSR 52
+ PA+ PG Q R+ GRRA G G P P + + S G R +R
Sbjct: 177 TTPASRNPGLRAQERQSGRRAAGGGGARAEPPRVPPCRPAGCSGGNRSRRAAGAGPRTTR 236
Query: 53 DSPPPRWPEGAPRAGQR 69
PPPR P AP AG R
Sbjct: 237 RKPPPRPPGTAPAAGLR 253
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 39.3 bits (90), Expect = 0.003
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 2 SAPATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGL---------ARQSR 52
+ PA+ PG Q R+ GRRA G G P P + + S G R +R
Sbjct: 106 TTPASRNPGLRAQERQSGRRAAGGGGARAEPPRVPPCRPAGCSGGNRSRRAAGAGPRTTR 165
Query: 53 DSPPPRWPEGAPRAGQR 69
PPPR P AP AG R
Sbjct: 166 RKPPPRPPGTAPAAGLR 182
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 37.7 bits (86), Expect = 0.009
Identities = 34/104 (32%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVDPA 78
GRR Q G Q P P + P +G + PPP PEG P G +G P
Sbjct: 38 GRRPQ-GGNQPQRPPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQG---PP 93
Query: 79 ALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWRPP 122
GK P GG + PP P P R + G+ RPP
Sbjct: 94 PHPGKPERPPPQGGNQSQGTPP--PPGKPERPPPQGGNQSHRPP 135
Score = 34.7 bits (78), Expect = 0.077
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 24/114 (21%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGL--------------ARQSRDS 54
PG ++ G G H P GP PQE SR + +
Sbjct: 138 PGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSARSPPGKPQGPPQQEGNKPQGP 197
Query: 55 PPPRWPEGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPP----GRQP 104
PPP P+G P AG ++ + PA +G P GG RPP G+QP
Sbjct: 198 PPPGKPQGPPPAGGNPQQPQAPPAG-KPQGPPPPPQGG-----RPPRPAQGQQP 245
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 37.4 bits (85), Expect = 0.012
Identities = 35/114 (30%), Positives = 45/114 (39%), Gaps = 19/114 (16%)
Query: 4 PATAGPGTVKQR-RRWGRRAQVGEGQHLN-HPWGPD-----PQESPGSRGLARQSRDSPP 56
PA G + R R+ G A+ EG + PW P +PG+RG R+ P
Sbjct: 75 PAARGQHVPELRSRKPGPAARTEEGGDVTGRPWQPPLLPPPGVPTPGNRGGERRGERRAP 134
Query: 57 PR---WPEGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVP 107
PR P G+P A + RG +P AL G G P Q T P
Sbjct: 135 PRPAGAPRGSPMAARGRARGEAEPPAL---------GAGACDSRNQPDSQRTAP 179
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 37.0 bits (84), Expect = 0.015
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQ 68
PG V + G +GE H P P Q PG+ G D PP GAP
Sbjct: 838 PGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP----GAP---- 889
Query: 69 RLRRGRVDPAALLG-KGHLGLPG--GGVVLRYR-----PPGRQPTVPTRASFRCGSALWR 120
G+ PA L G G GLPG GG L+ PPG + R + G +
Sbjct: 890 ----GKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP 945
Query: 121 P 121
P
Sbjct: 946 P 946
Score = 32.7 bits (73), Expect = 0.29
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 36 PDPQESPGSRGLARQSRDSPP--PRWPEGAP----RAGQRLRRGR-------VDPAALLG 82
P P PGS GL +S D P PR P+G +AG+R R G DP
Sbjct: 412 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD 471
Query: 83 KGHLGLPG 90
+G GLPG
Sbjct: 472 RGFDGLPG 479
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 36 PDPQESPGSRGLARQSRDSPPP--RWPEGAP-RAGQRLRRGRVDPAALLGK----GHLGL 88
P P SPG RG A PP P+G P AG++ G P G+ G +GL
Sbjct: 925 PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 984
Query: 89 PG 90
PG
Sbjct: 985 PG 986
Score = 30.0 bits (66), Expect = 1.9
Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGP-DPQESPGSRGLARQSRDSPPPR-----WPEG 62
PG+V Q+ R G Q G P GP P PG RG A + P P G
Sbjct: 1285 PGSVGQQGRPGATGQAG-------PPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPG 1337
Query: 63 APRAGQRLRRGRVDPAALLG-KGHLGLPG-GGVVLRYRPPG 101
G++ RG P G KG +G+PG G + PPG
Sbjct: 1338 --EQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1376
Score = 27.7 bits (60), Expect = 9.4
Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 28/101 (27%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRG----------LARQSRDS-------PPPRWPE 61
G R G G + P P PQ PG+ G + RD P P P
Sbjct: 932 GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 991
Query: 62 GAPRAGQRLRRGRV-DPAALLGKGHLGLPGGGVVLRYRPPG 101
G AG+ +G V DP KG+ G G PPG
Sbjct: 992 GV--AGEDGDKGEVGDPGQKGTKGNKGEHG--------PPG 1022
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 37.0 bits (84), Expect = 0.015
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQ 68
PG V + G +GE H P P Q PG+ G D PP GAP
Sbjct: 817 PGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP----GAP---- 868
Query: 69 RLRRGRVDPAALLG-KGHLGLPG--GGVVLRYR-----PPGRQPTVPTRASFRCGSALWR 120
G+ PA L G G GLPG GG L+ PPG + R + G +
Sbjct: 869 ----GKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP 924
Query: 121 P 121
P
Sbjct: 925 P 925
Score = 32.7 bits (73), Expect = 0.29
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 36 PDPQESPGSRGLARQSRDSPP--PRWPEGAP----RAGQRLRRGR-------VDPAALLG 82
P P PGS GL +S D P PR P+G +AG+R R G DP
Sbjct: 391 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD 450
Query: 83 KGHLGLPG 90
+G GLPG
Sbjct: 451 RGFDGLPG 458
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 36 PDPQESPGSRGLARQSRDSPPP--RWPEGAP-RAGQRLRRGRVDPAALLGK----GHLGL 88
P P SPG RG A PP P+G P AG++ G P G+ G +GL
Sbjct: 904 PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 963
Query: 89 PG 90
PG
Sbjct: 964 PG 965
Score = 30.0 bits (66), Expect = 1.9
Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGP-DPQESPGSRGLARQSRDSPPPR-----WPEG 62
PG+V Q+ R G Q G P GP P PG RG A + P P G
Sbjct: 1264 PGSVGQQGRPGATGQAG-------PPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPG 1316
Query: 63 APRAGQRLRRGRVDPAALLG-KGHLGLPG-GGVVLRYRPPG 101
G++ RG P G KG +G+PG G + PPG
Sbjct: 1317 --EQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1355
Score = 27.7 bits (60), Expect = 9.4
Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 28/101 (27%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRG----------LARQSRDS-------PPPRWPE 61
G R G G + P P PQ PG+ G + RD P P P
Sbjct: 911 GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 970
Query: 62 GAPRAGQRLRRGRV-DPAALLGKGHLGLPGGGVVLRYRPPG 101
G AG+ +G V DP KG+ G G PPG
Sbjct: 971 GV--AGEDGDKGEVGDPGQKGTKGNKGEHG--------PPG 1001
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 37.0 bits (84), Expect = 0.015
Identities = 38/121 (31%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQ 68
PG V + G +GE H P P Q PG+ G D PP GAP
Sbjct: 924 PGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPP----GAP---- 975
Query: 69 RLRRGRVDPAALLG-KGHLGLPG--GGVVLRYR-----PPGRQPTVPTRASFRCGSALWR 120
G+ PA L G G GLPG GG L+ PPG + R + G +
Sbjct: 976 ----GKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGP 1031
Query: 121 P 121
P
Sbjct: 1032 P 1032
Score = 32.7 bits (73), Expect = 0.29
Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 36 PDPQESPGSRGLARQSRDSPP--PRWPEGAP----RAGQRLRRGR-------VDPAALLG 82
P P PGS GL +S D P PR P+G +AG+R R G DP
Sbjct: 498 PGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGD 557
Query: 83 KGHLGLPG 90
+G GLPG
Sbjct: 558 RGFDGLPG 565
Score = 30.8 bits (68), Expect = 1.1
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 36 PDPQESPGSRGLARQSRDSPPP--RWPEGAP-RAGQRLRRGRVDPAALLGK----GHLGL 88
P P SPG RG A PP P+G P AG++ G P G+ G +GL
Sbjct: 1011 PGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGL 1070
Query: 89 PG 90
PG
Sbjct: 1071 PG 1072
Score = 30.0 bits (66), Expect = 1.9
Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGP-DPQESPGSRGLARQSRDSPPPR-----WPEG 62
PG+V Q+ R G Q G P GP P PG RG A + P P G
Sbjct: 1371 PGSVGQQGRPGATGQAG-------PPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPG 1423
Query: 63 APRAGQRLRRGRVDPAALLG-KGHLGLPG-GGVVLRYRPPG 101
G++ RG P G KG +G+PG G + PPG
Sbjct: 1424 --EQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPG 1462
Score = 27.7 bits (60), Expect = 9.4
Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 28/101 (27%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRG----------LARQSRDS-------PPPRWPE 61
G R G G + P P PQ PG+ G + RD P P P
Sbjct: 1018 GERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPP 1077
Query: 62 GAPRAGQRLRRGRV-DPAALLGKGHLGLPGGGVVLRYRPPG 101
G AG+ +G V DP KG+ G G PPG
Sbjct: 1078 GV--AGEDGDKGEVGDPGQKGTKGNKGEHG--------PPG 1108
>gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 36.2 bits (82), Expect = 0.026
Identities = 32/92 (34%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVDP- 77
GR A+V H H GP PQ P A S SP P GAP + L G V P
Sbjct: 84 GRAARVPCASH-THVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPG 142
Query: 78 -------------AALLGKGHLGLPGGGVVLR 96
AA G G GGG LR
Sbjct: 143 WRAAPRAGAPHQRAAATGSGGSRSVGGGKHLR 174
>gi|239749005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 36.2 bits (82), Expect = 0.026
Identities = 32/92 (34%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVDP- 77
GR A+V H H GP PQ P A S SP P GAP + L G V P
Sbjct: 78 GRAARVPCASH-THVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPG 136
Query: 78 -------------AALLGKGHLGLPGGGVVLR 96
AA G G GGG LR
Sbjct: 137 WRAAPRAGAPHQRAAATGSGGSRSVGGGKHLR 168
>gi|239743025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 36.2 bits (82), Expect = 0.026
Identities = 32/92 (34%), Positives = 34/92 (36%), Gaps = 15/92 (16%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVDP- 77
GR A+V H H GP PQ P A S SP P GAP + L G V P
Sbjct: 78 GRAARVPCASH-THVGGPGPQAGPACGFRALGSAQSPGPATAAGAPGFSRALSPGPVPPG 136
Query: 78 -------------AALLGKGHLGLPGGGVVLR 96
AA G G GGG LR
Sbjct: 137 WRAAPRAGAPHQRAAATGSGGSRSVGGGKHLR 168
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 36.2 bits (82), Expect = 0.026
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 32 HPWGPDPQESPGSR-GLARQSRDSP------PPRWPEGAPRAG-QRLRRGRVDPAALLGK 83
HP GP P ++ G+R G+ R++ +P P +W G P+ G ++L R A G+
Sbjct: 211 HPLGPPPVQACGAREGIKREASSAPSATSPTPGKW--GQPKKGKEQLDRALDMSGAARGQ 268
Query: 84 GH-LGLPGGGVV----LRYRPPGR---QPTVPTRASFRCGSALWRPPSKVYKVTRMSAGR 135
GH LG+ GG L + P R +P RA+ +R S + ++ GR
Sbjct: 269 GHFLGIVGGSSAGVGSLAFYPGVRSAFKPAGLARAAAAAHGDPYREESSSKQGAGLALGR 328
Query: 136 --GGIGAC 141
GG AC
Sbjct: 329 LLGGGRAC 336
>gi|23510333 pygopus homolog 2 [Homo sapiens]
Length = 406
Score = 35.8 bits (81), Expect = 0.034
Identities = 47/181 (25%), Positives = 67/181 (37%), Gaps = 27/181 (14%)
Query: 5 ATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAP 64
A GP ++ QR AQ G P+GP P + PG + SP P G P
Sbjct: 204 AELGPPSLSQRF-----AQPGA------PFGPSPLQRPGQGLPSLPPNTSPFPGPDPGFP 252
Query: 65 RAGQRLRRGRVDPAALLG---KGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSA---- 117
G ++P A + H G P V G QP+ P +S R G
Sbjct: 253 GPGGEDGGKPLNPPASTAFPQEPHSGSPAAAV------NGNQPSFPPNSSGRGGGTPDAN 306
Query: 118 LWRPPSKVYKVTRMSAGRGGI---GACQVLRGFNRALLLALNMVDRTGHSHCSGATGAAF 174
PP K + G + GAC+ ++ +L + H C+G T +A+
Sbjct: 307 SLAPPGKAGGGSGPQPPPGLVYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAY 366
Query: 175 G 175
G
Sbjct: 367 G 367
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 35.0 bits (79), Expect = 0.059
Identities = 38/120 (31%), Positives = 44/120 (36%), Gaps = 21/120 (17%)
Query: 4 PATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGL--ARQSRDSPPP---- 57
P GP K G + +VG+ P P P PGS GL R R P P
Sbjct: 189 PGFKGPTGYK-----GEQGEVGKDGEKGDPGPPGPAGLPGSVGLQGPRGLRGLPGPLGPP 243
Query: 58 --------RWPEGAPRA-GQRLRRGRVDPAALLG-KGHLGLPGGGVVLRYRPPGRQPTVP 107
R P G P A G+ RG P G KG LG PG P +P +P
Sbjct: 244 GDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMP 303
Score = 32.3 bits (72), Expect = 0.38
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 4 PATAGPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLA--RQSRDSPPPRWPE 61
P AG K R GR ++GE P P PG RG A R S + P+ P
Sbjct: 339 PGRAGSKGEKGER--GRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPP 396
Query: 62 GAPRAGQRLRRGRVDPAALLGKGHLGLPG 90
GAP G R +G+ KG +G PG
Sbjct: 397 GAP--GVRGFQGQ--------KGSMGDPG 415
>gi|139394646 iroquois homeobox protein 5 [Homo sapiens]
Length = 483
Score = 34.7 bits (78), Expect = 0.077
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 41 SPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPP 100
SP AR + D P P +P GAP G G V P PGG V+ PP
Sbjct: 274 SPAGPAAARLAED-PAPHYPAGAPAPGPHPAAGEVPPG----------PGGPSVIHSPPP 322
Query: 101 GRQPTV 106
P V
Sbjct: 323 PPPPAV 328
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 34.3 bits (77), Expect = 0.10
Identities = 38/118 (32%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 19 GRRAQVGEGQHL--NHPWGPDPQESPG---------SRGLARQSRDSP--PPRWPEGAPR 65
G R +G +H P P SPG S GLA +P PPR PE P
Sbjct: 947 GARGGLGLPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPE--PP 1004
Query: 66 AGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWRPPS 123
+ G P +G L PG PP P+ P RAS GS L P S
Sbjct: 1005 SLVAGASGGASPVGFTPRGGLSPPGHSP----GPPRTFPSAPPRASGSHGSLLLPPAS 1058
>gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo
sapiens]
Length = 323
Score = 34.3 bits (77), Expect = 0.10
Identities = 40/124 (32%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQES---PGSRGLARQSRDSPPPRWPEGAPR 65
P V + R W ++ G P G + + PG G A + D+P R P +P
Sbjct: 88 PLWVSRFRGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRG-DTPCSRQPSRSPL 146
Query: 66 AGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPG-------RQPTVPTRASFRCGSAL 118
AG+ +R + A G G G PG G V RPPG R+ P R SF G L
Sbjct: 147 AGRSVRAPQRRVGA--GAGWRGGPGLGPV---RPPGWRAGRRTRRTAGPGRLSF--GKTL 199
Query: 119 WRPP 122
PP
Sbjct: 200 AVPP 203
>gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo
sapiens]
Length = 323
Score = 34.3 bits (77), Expect = 0.10
Identities = 40/124 (32%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQES---PGSRGLARQSRDSPPPRWPEGAPR 65
P V + R W ++ G P G + + PG G A + D+P R P +P
Sbjct: 88 PLWVSRFRGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRG-DTPCSRQPSRSPL 146
Query: 66 AGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPG-------RQPTVPTRASFRCGSAL 118
AG+ +R + A G G G PG G V RPPG R+ P R SF G L
Sbjct: 147 AGRSVRAPQRRVGA--GAGWRGGPGLGPV---RPPGWRAGRRTRRTAGPGRLSF--GKTL 199
Query: 119 WRPP 122
PP
Sbjct: 200 AVPP 203
>gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo
sapiens]
Length = 323
Score = 34.3 bits (77), Expect = 0.10
Identities = 40/124 (32%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQES---PGSRGLARQSRDSPPPRWPEGAPR 65
P V + R W ++ G P G + + PG G A + D+P R P +P
Sbjct: 88 PLWVSRFRGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRG-DTPCSRQPSRSPL 146
Query: 66 AGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPG-------RQPTVPTRASFRCGSAL 118
AG+ +R + A G G G PG G V RPPG R+ P R SF G L
Sbjct: 147 AGRSVRAPQRRVGA--GAGWRGGPGLGPV---RPPGWRAGRRTRRTAGPGRLSF--GKTL 199
Query: 119 WRPP 122
PP
Sbjct: 200 AVPP 203
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 33.9 bits (76), Expect = 0.13
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 36 PDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGVVL 95
P +E PG R R PE AP G RG+ L P G+
Sbjct: 657 PSTEEPPGERLRGESRSSGSGERGPEEAPEGGAAAARGQRPRVPALEPPQ---PPRGLRK 713
Query: 96 RYRPPGRQPTVPTRASFRCGSAL 118
+ PG++PT SFR G L
Sbjct: 714 GAQEPGKRPTFSKVTSFRKGRPL 736
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 33.5 bits (75), Expect = 0.17
Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 10/97 (10%)
Query: 33 PWGPDPQESPGSRGLARQSRDSPPPRWPEGA-------PRAGQRLRRGRVDPAALLGKGH 85
PWGP P SP SR AR + SP PR P + P R PA G
Sbjct: 256 PWGPSPAASPESRKSARTT--SPEPRKPSPSESPEPWKPFPAVSPEPRRPAPAVSPGSWK 313
Query: 86 LGLPGGGVVLRYRPPGRQ-PTVPTRASFRCGSALWRP 121
G PG + P P P + + W+P
Sbjct: 314 PGPPGSPRPWKSNPSASSGPWKPAKPAPSVSPGPWKP 350
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 33.1 bits (74), Expect = 0.22
Identities = 29/104 (27%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 31 NHPWGPDPQ----ESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVDPAALLGKGHL 86
N P GP P + P +G + + PPP P+G P G + R R P G
Sbjct: 45 NKPQGPPPPPGKPQGPPPQG-GNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ 103
Query: 87 G------LPGGGVVLRYRPPGRQPTVPTRASFRCGSALWRPPSK 124
G P GG + PP +P P + PP K
Sbjct: 104 GGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGK 147
Score = 32.7 bits (73), Expect = 0.29
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 16/105 (15%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDP----QESPGSRGLARQSRDSPPPRWPEGAP 64
PG + G + Q Q N P GP P Q P G QS SPP + P+G P
Sbjct: 94 PGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGK-PQGPP 152
Query: 65 RAGQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTR 109
+ +G PA GG PP QP P R
Sbjct: 153 QQEGNNPQGPPPPA-----------GGNPQQPQAPPAGQPQGPPR 186
Score = 28.5 bits (62), Expect = 5.5
Identities = 20/67 (29%), Positives = 26/67 (38%)
Query: 8 GPGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAG 67
GP + R+ G+ Q G +PQ P G Q +PP P+G PR
Sbjct: 129 GPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPP 188
Query: 68 QRLRRGR 74
Q R R
Sbjct: 189 QGGRPSR 195
>gi|239756937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 32.7 bits (73), Expect = 0.29
Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 20/107 (18%)
Query: 17 RWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVD 76
R RR + G G H PGSRG R+ PP P RA R G
Sbjct: 71 RPSRRHRAGCGAH-----------GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQ 119
Query: 77 PAALLGKGHLGLPGGGVVLRYRPPGRQPTV--PTRASFRCGSALWRP 121
PA+ G G PP P P+R GS+ P
Sbjct: 120 PAS-------GAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHP 159
>gi|239751449 PREDICTED: hypothetical protein XP_002347867 [Homo
sapiens]
Length = 315
Score = 32.7 bits (73), Expect = 0.29
Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 20/107 (18%)
Query: 17 RWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVD 76
R RR + G G H PGSRG R+ PP P RA R G
Sbjct: 71 RPSRRHRAGCGAH-----------GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQ 119
Query: 77 PAALLGKGHLGLPGGGVVLRYRPPGRQPTV--PTRASFRCGSALWRP 121
PA+ G G PP P P+R GS+ P
Sbjct: 120 PAS-------GAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHP 159
>gi|239745954 PREDICTED: hypothetical protein XP_002343623 [Homo
sapiens]
Length = 315
Score = 32.7 bits (73), Expect = 0.29
Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 20/107 (18%)
Query: 17 RWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQRLRRGRVD 76
R RR + G G H PGSRG R+ PP P RA R G
Sbjct: 71 RPSRRHRAGCGAH-----------GPGSRGRERRRGSRDPPAGPVARARARGRSAPGSAQ 119
Query: 77 PAALLGKGHLGLPGGGVVLRYRPPGRQPTV--PTRASFRCGSALWRP 121
PA+ G G PP P P+R GS+ P
Sbjct: 120 PAS-------GAAGPAAAPEAAPPAWDPATLPPSRKRNSLGSSPLHP 159
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 32.7 bits (73), Expect = 0.29
Identities = 35/128 (27%), Positives = 48/128 (37%), Gaps = 10/128 (7%)
Query: 38 PQESPGSRGLARQSRDSPP----PRWPEGAPRAGQRLRRGRVDPAALLGKGHLGLPGGGV 93
P+ +PG R R+ +PP P P P GQ+ R PA L P
Sbjct: 1805 PKGTPGPRATPRKV--APPCLAQPAAPAKVPSPGQQRSRSLHRPAKTSELATLSQPPRSA 1862
Query: 94 VLRYRPPGRQPTVPTRASFRCGSALWRPPSKVYKVTRMSAGRGGIGACQVLRGFNRALLL 153
PP R P+ +S + A P K VT+ + G GA V + R LL
Sbjct: 1863 T----PPARLAKTPSSSSSQTSPASQPLPRKRPPVTQAAGALPGPGASPVPKTPARTLLA 1918
Query: 154 ALNMVDRT 161
+ R+
Sbjct: 1919 KQHKTQRS 1926
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 32.7 bits (73), Expect = 0.29
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPEGAPRAGQ 68
PG + G G H P GP PQE + + PPP P+G P G
Sbjct: 222 PGKPEGPPSQGGNKPQGPPPHPGKPQGPPPQE-------GNKPQRPPPPGRPQGPPPPGG 274
Query: 69 RLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQP 104
++ + P A +G P GG +RPP QP
Sbjct: 275 NPQQ-PLPPPAGKPQGPPPPPQGG--RPHRPPQGQP 307
Score = 30.8 bits (68), Expect = 1.1
Identities = 35/118 (29%), Positives = 43/118 (36%), Gaps = 15/118 (12%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPR--WPEGAPRA 66
PG + R G G P GP PQ S+G PPPR PEG P
Sbjct: 54 PGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQG--------PPPRPGKPEGQPPQ 105
Query: 67 GQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWRPPSK 124
G +G P GK P GG + PP +P P + G+ PP +
Sbjct: 106 GGNQSQG---PPPRPGKPEGPPPQGGNQSQGPPP--RPGKPEGPPPQGGNQSQGPPPR 158
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/107 (30%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPP-PRWPEGAPRAGQRLRRGRVDP 77
GRR Q G P P+ P G QS+ PP P PEG P G +G P
Sbjct: 38 GRRPQGGNQPQRTPPPPGKPEGRPPQGG--NQSQGPPPRPGKPEGPPPQGGNQSQG---P 92
Query: 78 AALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWRPPSK 124
GK P GG + PP +P P + G+ PP +
Sbjct: 93 PPRPGKPEGQPPQGGNQSQGPPP--RPGKPEGPPPQGGNQSQGPPPR 137
Score = 28.9 bits (63), Expect = 4.2
Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 9 PGTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPR--WPEGAPRA 66
PG + G G H P GP PQ S+G PPPR PEG P
Sbjct: 159 PGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQG--------PPPRPGKPEGPPPQ 210
Query: 67 GQRLRRGRVDPAALLGKGHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWRPP 122
G +G P GK G P G PP P P + G+ RPP
Sbjct: 211 GGNQSQG---PPPRPGKPE-GPPSQGGNKPQGPP-PHPGKPQGPPPQEGNKPQRPP 261
Score = 28.1 bits (61), Expect = 7.2
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 25 GEGQHLNHPWGPDPQESPGSRGLARQSRDSPP-PRWPEGAPRAGQRLRRGRVDPAALLGK 83
G Q P P E P +G QS+ PP P PEG P G +G P GK
Sbjct: 127 GGNQSQGPPPRPGKPEGPPPQG-GNQSQGPPPRPGKPEGPPPQGGNQSQG---PPPHPGK 182
Query: 84 GHLGLPGGGVVLRYRPPGRQPTVPTRASFRCGSALWRPPSK 124
P GG + PP +P P + G+ PP +
Sbjct: 183 PEGPPPQGGNQSQGPPP--RPGKPEGPPPQGGNQSQGPPPR 221
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 32.3 bits (72), Expect = 0.38
Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 18/96 (18%)
Query: 19 GRRAQVGEGQHLNHPWGPDPQESPGSRGL-----------ARQSRDSPPPRWPEGAPRAG 67
G+R GE P P + PGSRG R SP P P+G+P
Sbjct: 467 GKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG-- 524
Query: 68 QRLRRGRVDPAALLG-KGHLGLPGG-GVVLRYRPPG 101
GR A L G KG G PG G + PPG
Sbjct: 525 ---EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPG 557
Score = 31.6 bits (70), Expect = 0.65
Identities = 34/92 (36%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 3 APATAGP-GTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQS--RDSPPPRW 59
AP T GP G QR G Q GE P P P PG +G + S R P P
Sbjct: 945 APGTPGPQGIAGQRGVVGLPGQRGER---GFPGLPGPSGEPGKQGPSGASGERGPPGPMG 1001
Query: 60 PEG-APRAGQRLRRGRVDPAALLGKGHLGLPG 90
P G A G+ R G P A G G PG
Sbjct: 1002 PPGLAGPPGESGREGA--PGAEGSPGRDGSPG 1031
Score = 29.3 bits (64), Expect = 3.2
Identities = 31/101 (30%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 3 APATAGP-GTVKQRRRWGRRAQVGEGQHLNHPWGPDPQESPGSRGLARQSRDSPPPRWPE 61
+P AGP G+ + R G G P P P G G A Q PP P
Sbjct: 513 SPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPG 572
Query: 62 GAPRAGQRLRRGRVDPAALLGK-GHLGLPGGGVVLRYRPPG 101
+AG G A GK G G+PG PPG
Sbjct: 573 ARGQAGVMGFPGPKGAAGEPGKAGERGVPG--------PPG 605
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.140 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,565,272
Number of Sequences: 37866
Number of extensions: 819577
Number of successful extensions: 3362
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 3077
Number of HSP's gapped (non-prelim): 421
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.