Guide to the Human Genome
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Name: LOC100287417 Sequence: fasta or formatted (323aa) NCBI GI: 239745771
Description:

PREDICTED: hypothetical protein XP_002343549

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         34           3
 C cysteine            1.2          4           1
 D aspartate           2.8          9           2
 E glutamate           3.1         10           1
 F phenylalanine       2.5          8           1
 G glycine            11.8         38           2
 H histidine           1.9          6           1
 I isoleucine          0.6          2           1
 K lysine              2.2          7           1
 L leucine             8.4         27           1
 M methionine          0.6          2           1
 N asparagine          0.3          1           1
 P proline            13.9         45           3
 Q glutamine           3.7         12           1
 R arginine           14.2         46           3
 S serine              9.0         29           2
 T threonine           3.1         10           2
 V valine              5.9         19           1
 W tryptophan          3.4         11           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343549 
LOC100287450          1.000   PREDICTED: hypothetical protein XP_002343550 
LOC100287374          1.000   PREDICTED: hypothetical protein XP_002343548 
SAMD1                 0.037   sterile alpha motif domain containing 1 
LOC100287524          0.037   PREDICTED: hypothetical protein XP_002342307 
LOC100292727          0.034   PREDICTED: hypothetical protein 
LOC100290946          0.032   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.032   PREDICTED: hypothetical protein XP_002344246 
DOC2B                 0.032   double C2-like domains, beta 
SETD1B                0.032   SET domain containing 1B 
LOC100128370          0.030   PREDICTED: hypothetical protein 
LOC100128370          0.030   PREDICTED: hypothetical protein 
LOC100287920          0.029   PREDICTED: hypothetical protein XP_002344198 
LOC100287063          0.029   PREDICTED: hypothetical protein XP_002342368 
LOC100127930          0.027   PREDICTED: hypothetical protein 
LOC100287063          0.027   PREDICTED: hypothetical protein 
DACT3                 0.027   thymus expressed gene 3-like 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
TAF4                  0.027   TBP-associated factor 4 
LOC100291634          0.026   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.026   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.026   PREDICTED: hypothetical protein 
LOC100133305          0.026   PREDICTED: hypothetical protein 
LOC100133305          0.026   PREDICTED: hypothetical protein 
LMTK3                 0.026   lemur tyrosine kinase 3 
SYNJ1                 0.026   synaptojanin 1 isoform a 
SYNJ1                 0.026   synaptojanin 1 isoform b 
CABP1                 0.026   calcium binding protein 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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