Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169211238
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169211238 PREDICTED: hypothetical protein [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169211238 PREDICTED: hypothetical protein [Homo sapiens] 291 1e-79
gi|169211629 PREDICTED: hypothetical protein [Homo sapiens] 291 1e-79
gi|169210797 PREDICTED: hypothetical protein [Homo sapiens] 288 1e-78
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-05
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-05
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-05
gi|239508966 PREDICTED: hypothetical protein [Homo sapiens] 44 5e-05
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 39 0.001
gi|239745235 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|122937233 discs, large (Drosophila) homolog-associated protei... 39 0.002
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 39 0.002
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 39 0.002
gi|11386197 forkhead box E3 [Homo sapiens] 38 0.003
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.004
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 37 0.004
gi|226437579 NAC alpha domain containing [Homo sapiens] 37 0.005
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens] 37 0.005
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens] 37 0.005
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens] 37 0.005
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens] 37 0.005
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 37 0.005
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 37 0.005
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 37 0.005
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 37 0.006
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 37 0.006
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 37 0.006
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.006
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.006
>gi|169211238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 291 bits (745), Expect = 1e-79
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP
Sbjct: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
Query: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR 120
GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR
Sbjct: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR 120
Query: 121 RAARVSTRLRSSFSVF 136
RAARVSTRLRSSFSVF
Sbjct: 121 RAARVSTRLRSSFSVF 136
>gi|169211629 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 291 bits (745), Expect = 1e-79
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP
Sbjct: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
Query: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR 120
GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR
Sbjct: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR 120
Query: 121 RAARVSTRLRSSFSVF 136
RAARVSTRLRSSFSVF
Sbjct: 121 RAARVSTRLRSSFSVF 136
>gi|169210797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 288 bits (736), Expect = 1e-78
Identities = 135/136 (99%), Positives = 135/136 (99%)
Query: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP
Sbjct: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
Query: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR 120
GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGAS QPNLPGCAVRCR
Sbjct: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLPGCAVRCR 120
Query: 121 RAARVSTRLRSSFSVF 136
RAARVSTRLRSSFSVF
Sbjct: 121 RAARVSTRLRSSFSVF 136
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 43.5 bits (101), Expect = 5e-05
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 44 GSPIRRVTA-PGPVPP----------GPGSPACQFREMAREDEE---PPASRGPAKPLRP 89
G P+RR A PGP PP GP A R R E PP R PA+P +P
Sbjct: 28 GRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPARPSQP 87
Query: 90 PGSSRHAWPLAAQPP 104
P ++R L A PP
Sbjct: 88 PSAARRERALLANPP 102
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 43.5 bits (101), Expect = 5e-05
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 44 GSPIRRVTA-PGPVPP----------GPGSPACQFREMAREDEE---PPASRGPAKPLRP 89
G P+RR A PGP PP GP A R R E PP R PA+P +P
Sbjct: 28 GRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPARPSQP 87
Query: 90 PGSSRHAWPLAAQPP 104
P ++R L A PP
Sbjct: 88 PSAARRERALLANPP 102
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 43.5 bits (101), Expect = 5e-05
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 44 GSPIRRVTA-PGPVPP----------GPGSPACQFREMAREDEE---PPASRGPAKPLRP 89
G P+RR A PGP PP GP A R R E PP R PA+P +P
Sbjct: 28 GRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPARPSQP 87
Query: 90 PGSSRHAWPLAAQPP 104
P ++R L A PP
Sbjct: 88 PSAARRERALLANPP 102
>gi|239508966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 43.5 bits (101), Expect = 5e-05
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 44 GSPIRRVTA-PGPVPP----------GPGSPACQFREMAREDEE---PPASRGPAKPLRP 89
G P+RR A PGP PP GP A R R E PP R PA+P +P
Sbjct: 28 GRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPARPSQP 87
Query: 90 PGSSRHAWPLAAQPP 104
P ++R L A PP
Sbjct: 88 PSAARRERALLANPP 102
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 42.0 bits (97), Expect = 2e-04
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 26/99 (26%)
Query: 34 PVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSS 93
P A + G+ GSP+ RV+AP P PP P PP P G S
Sbjct: 48 PRGAVSAGAPGSPLYRVSAPPPAPPPP----------------PP----------PGGPS 81
Query: 94 RHAWPLAAQPPGASPQPNLPGCAVRCRRAARVSTRLRSS 132
R P A PGA P G C A + RLR S
Sbjct: 82 RSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 42.0 bits (97), Expect = 2e-04
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 26/99 (26%)
Query: 34 PVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSS 93
P A + G+ GSP+ RV+AP P PP P PP P G S
Sbjct: 48 PRGAVSAGAPGSPLYRVSAPPPAPPPP----------------PP----------PGGPS 81
Query: 94 RHAWPLAAQPPGASPQPNLPGCAVRCRRAARVSTRLRSS 132
R P A PGA P G C A + RLR S
Sbjct: 82 RSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 39.3 bits (90), Expect = 0.001
Identities = 31/87 (35%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 52 APGPVPPGPGSP-ACQFREMAREDEEPPASRGPAKPLR-------------PPGSSRHAW 97
+PGP PGP + A PPA PA P R PP A
Sbjct: 161 SPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAP 220
Query: 98 PLAAQPPGASPQPNLPGCAVRCRRAAR 124
P QPP PQP G AVR AAR
Sbjct: 221 PQQQQPPPPQPQPPPEGGAVRAGGAAR 247
Score = 33.1 bits (74), Expect = 0.072
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 36 AAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRH 95
A ++ P P P P +PA R A PP S GPA+P P + R
Sbjct: 118 APAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP-SPGPAQP--GPRAQRA 174
Query: 96 AWPLAAQPPGASPQP 110
A PLAA PP + P
Sbjct: 175 A-PLAAPPPAPAAPP 188
Score = 32.7 bits (73), Expect = 0.094
Identities = 26/78 (33%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 46 PIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG 105
P R T P P G+PA PP P P + R A A PP
Sbjct: 102 PRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP- 160
Query: 106 ASPQPNLPGCAVRCRRAA 123
SP P PG R +RAA
Sbjct: 161 -SPGPAQPG--PRAQRAA 175
Score = 28.9 bits (63), Expect = 1.4
Identities = 19/60 (31%), Positives = 23/60 (38%)
Query: 67 FREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCRRAARVS 126
+R AR + PA P P G+ A A P A P P P A RA R +
Sbjct: 93 YRNAARVQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAA 152
>gi|239745235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 664
Score = 38.5 bits (88), Expect = 0.002
Identities = 33/94 (35%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 34 PVAAFTVGSSGSPIRRVTA--PGPVPPGPGSPACQFREMAREDEEPPAS----------R 81
P+A SS + TA PG PPGP A + R E P S
Sbjct: 95 PLALSLDSSSDQAVPSGTAGVPGRAPPGPAPSALAWPTAHRTPESQPVSSVAGLVSGSVA 154
Query: 82 GPAKPLRPPGSSRHAWPLAAQPPGAS--PQPNLP 113
GPA+ + PGS A PL PP AS P P+ P
Sbjct: 155 GPAEEMLVPGSPEIAAPL---PPSASLGPSPSSP 185
>gi|122937233 discs, large (Drosophila) homolog-associated protein 3
[Homo sapiens]
Length = 979
Score = 38.5 bits (88), Expect = 0.002
Identities = 36/104 (34%), Positives = 41/104 (39%), Gaps = 12/104 (11%)
Query: 19 RARSCWCSPGTQCLGPVA--AFTVGSSGSPIRRVTAPGPVPPGPGSP------ACQFREM 70
RA CS CL +A A G GS AP P+PPG +P A +
Sbjct: 505 RAIQAGCSQDDDCLPLLATPAAVSGRPGSSFNFRKAPPPIPPGSQAPPRISITAQSSTDS 564
Query: 71 ARED---EEPPASR-GPAKPLRPPGSSRHAWPLAAQPPGASPQP 110
A E E PA R A L P LA PP ASP+P
Sbjct: 565 AHESFTAAEGPARRCSSADGLDGPAMGARTLELAPVPPRASPKP 608
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 38.5 bits (88), Expect = 0.002
Identities = 34/100 (34%), Positives = 39/100 (39%), Gaps = 18/100 (18%)
Query: 27 PGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEP-PASRGPAK 85
PG+ G A GS +R T P P+PP P PA R+ R P PAS GPA
Sbjct: 594 PGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPA--RRQSRRSPASPSPASPGPAS 651
Query: 86 P----LRPP-----------GSSRHAWPLAAQPPGASPQP 110
P L P G + A PP PQP
Sbjct: 652 PSPVSLSNPAQVDLGAATAEGGAPEAISGVPTPPAIPPQP 691
Score = 33.5 bits (75), Expect = 0.055
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 41 GSSGSPIRRVTAPGPVPPG---PGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAW 97
GS SP AP P+PPG PG+P R + P P P P + R +
Sbjct: 582 GSRSSP----PAP-PLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARRQSR 636
Query: 98 PLAAQPPGASPQPNLP 113
A P ASP P P
Sbjct: 637 RSPASPSPASPGPASP 652
Score = 32.3 bits (72), Expect = 0.12
Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 17/70 (24%)
Query: 56 VPPGPGSP---------ACQFREMAREDEEPPASRGPAKPLRPP---GSSRHAWPLAAQP 103
VPP P SP A +MAR + P PA+P PP SR + P P
Sbjct: 538 VPPRPASPKVTRSPPETAAPVEDMARRTKRP----APARPTMPPPQVSGSRSSPPAPPLP 593
Query: 104 PGASPQPNLP 113
PG S P P
Sbjct: 594 PG-SGSPGTP 602
Score = 26.2 bits (56), Expect = 8.8
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 52 APGPVP-PGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASP-Q 109
AP P P P P + +E E E PP P PP ++ +A + +P +
Sbjct: 514 APAPAPAPAPALASAATKERT-ESEVPPRPASPKVTRSPPETAAPVEDMARRTKRPAPAR 572
Query: 110 PNLP 113
P +P
Sbjct: 573 PTMP 576
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 38.5 bits (88), Expect = 0.002
Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 27 PGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP-GSPACQFREMAREDEEP--PASRGP 83
PG P + + G P T PGP P GP +P F E+ R P PA+ GP
Sbjct: 82 PGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPNMPFPELPRPYGAPTDPAAAGP 141
Query: 84 AKPLRPPGSSRHAWPLAAQPPGASPQPNLP 113
P S + P A G P PN+P
Sbjct: 142 L----GPWGSMSSGPWAPGMGGQYPTPNMP 167
Score = 30.4 bits (67), Expect = 0.46
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 28 GTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPL 87
G+ GP A G +P +PGP P P A PP + GP P
Sbjct: 146 GSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPPQAPGAAPPVPWGTVPPGAWGPPAPY 205
Query: 88 RPPGSS----------RHAWPLAAQPPGASPQPNLP 113
P S + + + + P GA P P P
Sbjct: 206 PAPTGSYPTPGLYPTPSNPFQVPSGPSGAPPMPGGP 241
>gi|11386197 forkhead box E3 [Homo sapiens]
Length = 319
Score = 37.7 bits (86), Expect = 0.003
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 28 GTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPL 87
G + P AAF SG P AP PP P + A E RE EE A RG A P
Sbjct: 3 GRSDMDPPAAF----SGFPALPAVAPSGPPPSPLAGA----EPGREPEEAAAGRGEAAPT 54
Query: 88 RPPGSSR 94
PG R
Sbjct: 55 PAPGPGR 61
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.4 bits (85), Expect = 0.004
Identities = 34/103 (33%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 26 SPGTQCLGPVAAFTVGS---SGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASR- 81
+P T + AA +G+ SGSP A GP P G+P E PPA R
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGA-GPAAPAEGAPGAA-------PEPPPAGRA 95
Query: 82 -----GPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRC 119
GP +P PP R P PP A +P G A C
Sbjct: 96 RPGGGGPQRP-GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSC 137
Score = 34.7 bits (78), Expect = 0.025
Identities = 34/111 (30%), Positives = 37/111 (33%), Gaps = 27/111 (24%)
Query: 26 SPGTQCLGPVAAFTVGSSGSPIRRVTAPGP-------VPPGPGSPACQFRE--------- 69
+PG P A G P R PGP VP GP PA + R
Sbjct: 82 APGAAPEPPPAGRARPGGGGPQR----PGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSC 137
Query: 70 ------MAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPG 114
A PA GPAKP P + A P PG P P PG
Sbjct: 138 APVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPG-PG 187
Score = 30.8 bits (68), Expect = 0.36
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 33 GPVAAFTVGSSGSPIRRVTAP----GPVPPGPGSPACQFREMAREDEEPPASRGPAKPLR 88
GP A + +P + P PP P +P+ PPA+ PA P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPS------------PPAAPAPAAPAA 268
Query: 89 PPGSSRHAWPLAAQPPGASPQPNLPGCAVRCRRAAR 124
P A A+PPG P AV AA+
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQ 304
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 37.4 bits (85), Expect = 0.004
Identities = 33/101 (32%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 37 AFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPL---RPPG-- 91
A T + SP + +P PPG SPA A PP PA+ PPG
Sbjct: 12 ARTPSAGASPAQ--ASPAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRA 69
Query: 92 SSRHAWPLAAQPPGASPQPNLPGCAVRCRRAARVSTRLRSS 132
S A P A P ASP P A R ++ S+ RS+
Sbjct: 70 SPGRASPAQASPAQASPARASPALASLSRSSSGRSSSARSA 110
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 28 GTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPG------------PGSPACQF-REMARED 74
GT L P G +P+ R P P PG P CQ +E + ED
Sbjct: 1202 GTPLLQPPENLAKGQPSTPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVED 1261
Query: 75 EEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNL 112
EEPP S G P + A QP G P+ +L
Sbjct: 1262 EEPPGSLGLPPPQAGVQPAAAAVSGTTQPLGTGPRVSL 1299
>gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 28 GTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPG------------PGSPACQF-REMARED 74
GT L P G +P+ R P P PG P CQ +E + ED
Sbjct: 1162 GTPLLQPPENLAKGQPSTPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVED 1221
Query: 75 EEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNL 112
EEPP S G P + A QP G P+ +L
Sbjct: 1222 EEPPGSLGLPPPQAGVQPAAAAVSGTTQPLGTGPRVSL 1259
>gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 28 GTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPG------------PGSPACQF-REMARED 74
GT L P G +P+ R P P PG P CQ +E + ED
Sbjct: 1162 GTPLLQPPENLAKGQPSTPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVED 1221
Query: 75 EEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNL 112
EEPP S G P + A QP G P+ +L
Sbjct: 1222 EEPPGSLGLPPPQAGVQPAAAAVSGTTQPLGTGPRVSL 1259
>gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 28 GTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPG------------PGSPACQF-REMARED 74
GT L P G +P+ R P P PG P CQ +E + ED
Sbjct: 1202 GTPLLQPPENLAKGQPSTPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVED 1261
Query: 75 EEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNL 112
EEPP S G P + A QP G P+ +L
Sbjct: 1262 EEPPGSLGLPPPQAGVQPAAAAVSGTTQPLGTGPRVSL 1299
>gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens]
Length = 1522
Score = 37.0 bits (84), Expect = 0.005
Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 28 GTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPG------------PGSPACQF-REMARED 74
GT L P G +P+ R P P PG P CQ +E + ED
Sbjct: 1162 GTPLLQPPENLAKGQPSTPVDRPLGPDPSAPGTLAGAALPPLEPPAPCLCQDPQEDSVED 1221
Query: 75 EEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNL 112
EEPP S G P + A QP G P+ +L
Sbjct: 1222 EEPPGSLGLPPPQAGVQPAAAAVSGTTQPLGTGPRVSL 1259
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 37.0 bits (84), Expect = 0.005
Identities = 32/82 (39%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEE-PPASRGPAKPLRPPGSS-----R 94
GS G P R + P PPGP A E+ R P RGP P PPG
Sbjct: 350 GSRGFPGRGI----PGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFH 405
Query: 95 HAWPLA--AQPPGASPQPNLPG 114
PL A PPG S P LPG
Sbjct: 406 DGDPLCPNACPPGRSGYPGLPG 427
Score = 26.6 bits (57), Expect = 6.7
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 55 PVPPGP-GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLP 113
P PPGP G P + R + PP GPA PG PGA +P P
Sbjct: 277 PGPPGPPGVPGIDGIDGDRGPKGPPGPPGPA---GEPGK-----------PGAPGKPGTP 322
Query: 114 G 114
G
Sbjct: 323 G 323
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 37.0 bits (84), Expect = 0.005
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 27 PGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPG----PGSPACQFRE-----MAREDEEP 77
PG GP +A T G+ G P + P P PPG PG Q + P
Sbjct: 268 PGAAGHGPPSAGTPGA-GHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGP 326
Query: 78 PASRGPAKPLRPPGSSRHAWPLAAQPPGASP 108
P S G P PPG P PP P
Sbjct: 327 PGSGGQPPPRPPPGMPHPGPPPMGMPPRGPP 357
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 37.0 bits (84), Expect = 0.005
Identities = 32/82 (39%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEE-PPASRGPAKPLRPPGSS-----R 94
GS G P R + P PPGP A E+ R P RGP P PPG
Sbjct: 107 GSRGFPGRGI----PGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFH 162
Query: 95 HAWPLA--AQPPGASPQPNLPG 114
PL A PPG S P LPG
Sbjct: 163 DGDPLCPNACPPGRSGYPGLPG 184
Score = 26.6 bits (57), Expect = 6.7
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 55 PVPPGP-GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLP 113
P PPGP G P + R + PP GPA PG PGA +P P
Sbjct: 34 PGPPGPPGVPGIDGIDGDRGPKGPPGPPGPA---GEPGK-----------PGAPGKPGTP 79
Query: 114 G 114
G
Sbjct: 80 G 80
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 36.6 bits (83), Expect = 0.006
Identities = 34/101 (33%), Positives = 40/101 (39%), Gaps = 24/101 (23%)
Query: 32 LGPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPG 91
+GP+A GSP R V P PPGP A AS GP P PPG
Sbjct: 747 VGPLAL------GSP-RLVRRP---PPGPAPAA--------------ASPGPPPPASPPG 782
Query: 92 SSRHAWPLAAQPPGASPQPNLPGCAVRCRRAARVSTRLRSS 132
+ P G P L G A+ RR +R S L +S
Sbjct: 783 APASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSAS 823
Score = 33.9 bits (76), Expect = 0.042
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLA 100
G G APGP PP P +P Q + PP GPA P PP +
Sbjct: 8 GRPGESPGATPAPGPPPPPPPAPP-QQQPPPPPPPAPPPGPGPAPPQHPPRAE------- 59
Query: 101 AQPPGASPQ 109
A PP A+ +
Sbjct: 60 ALPPEAADE 68
Score = 31.2 bits (69), Expect = 0.27
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 26 SPGTQCLGPVAAFTVGSSGSPIRRVTAP-GPVPPGP-GSPACQFREMAREDEEPPASRGP 83
SPG P A G+ SP T+P G +P P PA R ++R AS+ P
Sbjct: 771 SPGP----PPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALPARRLSRASRPLSASQ-P 825
Query: 84 AKPLRPPGSSRHAWPLAAQPPGASPQP 110
+ P PG + P ++ P P P
Sbjct: 826 SLPHGAPGPAASTRPASSSTPRLGPTP 852
Score = 26.2 bits (56), Expect = 8.8
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 72 REDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQP 110
R E P A+ P P PP + P PP P P
Sbjct: 9 RPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGP 47
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 36.6 bits (83), Expect = 0.006
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 33 GPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGS 92
GP+ +G + P T GP PPG G P PP + G + PL PP
Sbjct: 340 GPLPPVPLGIAPPP---PTPRGPPPPGRGGPP----------PPPPPATGRSGPLPPPPP 386
Query: 93 SRHAWPLAAQPPGASPQPN 111
P+ PP P P+
Sbjct: 387 GAGGPPMPPPPPPPPPPPS 405
Score = 33.5 bits (75), Expect = 0.055
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 16/66 (24%)
Query: 54 GPVPPGPGSPACQFREMAREDEEPPASRGPAKPLR------PPGSSRHAWPLAAQPPGAS 107
GP+PP P A PP RGP P R PP ++ + PL PPGA
Sbjct: 340 GPLPPVPLGIA----------PPPPTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAG 389
Query: 108 PQPNLP 113
P P
Sbjct: 390 GPPMPP 395
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 36.6 bits (83), Expect = 0.006
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 49 RVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASP 108
R AP P PP G P PP +RG P PP + P AA PP P
Sbjct: 273 RRQAPPPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRA----PTAAPPP---P 325
Query: 109 QPNLPGCAV 117
P+ P AV
Sbjct: 326 PPSRPSVAV 334
Score = 32.7 bits (73), Expect = 0.094
Identities = 25/85 (29%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPA-----SRGPAKPLRPPGSSRH 95
G+ P R P PP P P+ PP S P+ P PP S
Sbjct: 308 GAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLG 367
Query: 96 AWPLAAQPP-------GASPQPNLP 113
P+A PP G P P LP
Sbjct: 368 VGPVAPPPPPPPPPPPGPPPPPGLP 392
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 36.6 bits (83), Expect = 0.006
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 46 PIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG 105
P R +P P+ PG P + + A PPA+ PA P +PP + R L+ +P
Sbjct: 91 PPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAA-APAAPAQPP-APRPESQLSDRPQS 148
Query: 106 ASPQPNLPGCAVRCRRAA 123
+P PG + R AA
Sbjct: 149 WEQKPRGPGRSARSAGAA 166
Score = 28.1 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 64 ACQFREMAREDEEPPA--SRGPAKP-LRPPGSSRHAWPLAAQPPGASPQPNLP 113
AC R + PA +R P KP RP G++ H A P A QP P
Sbjct: 84 ACYARRLPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAP 136
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 36.6 bits (83), Expect = 0.006
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 46 PIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG 105
P R +P P+ PG P + + A PPA+ PA P +PP + R L+ +P
Sbjct: 91 PPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAA-APAAPAQPP-APRPESQLSDRPQS 148
Query: 106 ASPQPNLPGCAVRCRRAA 123
+P PG + R AA
Sbjct: 149 WEQKPRGPGRSARSAGAA 166
Score = 28.1 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 64 ACQFREMAREDEEPPA--SRGPAKP-LRPPGSSRHAWPLAAQPPGASPQPNLP 113
AC R + PA +R P KP RP G++ H A P A QP P
Sbjct: 84 ACYARRLPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAP 136
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,470,008
Number of Sequences: 37866
Number of extensions: 614802
Number of successful extensions: 6470
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 830
Number of HSP's that attempted gapping in prelim test: 4494
Number of HSP's gapped (non-prelim): 2503
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.