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Search of human proteins with 169210797
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169210797 PREDICTED: hypothetical protein [Homo sapiens]
(136 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210797 PREDICTED: hypothetical protein [Homo sapiens] 290 2e-79
gi|169211238 PREDICTED: hypothetical protein [Homo sapiens] 288 1e-78
gi|169211629 PREDICTED: hypothetical protein [Homo sapiens] 288 1e-78
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|239508966 PREDICTED: hypothetical protein [Homo sapiens] 45 2e-05
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 42 2e-04
gi|239752133 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 38 0.002
gi|239745235 PREDICTED: hypothetical protein [Homo sapiens] 38 0.003
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.003
gi|11386197 forkhead box E3 [Homo sapiens] 38 0.003
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 37 0.004
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.004
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.004
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.004
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 37 0.005
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 37 0.005
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens] 37 0.006
gi|237757312 synaptojanin 1 isoform c [Homo sapiens] 36 0.008
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 36 0.008
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 36 0.008
gi|140972063 protein phosphatase 1, regulatory subunit 9B [Homo ... 36 0.008
gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens] 36 0.008
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 36 0.011
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 35 0.014
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 35 0.014
>gi|169210797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 290 bits (743), Expect = 2e-79
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP
Sbjct: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
Query: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLPGCAVRCR 120
GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLPGCAVRCR
Sbjct: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLPGCAVRCR 120
Query: 121 RAARVSTRLRSSFSVF 136
RAARVSTRLRSSFSVF
Sbjct: 121 RAARVSTRLRSSFSVF 136
>gi|169211238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 288 bits (736), Expect = 1e-78
Identities = 135/136 (99%), Positives = 135/136 (99%)
Query: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP
Sbjct: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
Query: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLPGCAVRCR 120
GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGAS QPNLPGCAVRCR
Sbjct: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR 120
Query: 121 RAARVSTRLRSSFSVF 136
RAARVSTRLRSSFSVF
Sbjct: 121 RAARVSTRLRSSFSVF 136
>gi|169211629 PREDICTED: hypothetical protein [Homo sapiens]
Length = 136
Score = 288 bits (736), Expect = 1e-78
Identities = 135/136 (99%), Positives = 135/136 (99%)
Query: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP
Sbjct: 1 MAFKRFFSPLENIHQLCGRARSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGP 60
Query: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLPGCAVRCR 120
GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGAS QPNLPGCAVRCR
Sbjct: 61 GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASPQPNLPGCAVRCR 120
Query: 121 RAARVSTRLRSSFSVF 136
RAARVSTRLRSSFSVF
Sbjct: 121 RAARVSTRLRSSFSVF 136
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 44.7 bits (104), Expect = 2e-05
Identities = 34/93 (36%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 44 GSPIRRVTA-PGPVPP----------GPGSPACQFREMAREDEE---PPASRGPAKPLRP 89
G P+RR A PGP PP GP A R R E PP R PA+P +P
Sbjct: 28 GRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPARPSQP 87
Query: 90 PGSSRHAWPLAAQPPGASRQPNLPGCAVRCRRA 122
P ++R L A PP R C R R A
Sbjct: 88 PSAARRERALLANPPQRPRGDAGALCVSRPRGA 120
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 44.7 bits (104), Expect = 2e-05
Identities = 34/93 (36%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 44 GSPIRRVTA-PGPVPP----------GPGSPACQFREMAREDEE---PPASRGPAKPLRP 89
G P+RR A PGP PP GP A R R E PP R PA+P +P
Sbjct: 28 GRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPARPSQP 87
Query: 90 PGSSRHAWPLAAQPPGASRQPNLPGCAVRCRRA 122
P ++R L A PP R C R R A
Sbjct: 88 PSAARRERALLANPPQRPRGDAGALCVSRPRGA 120
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 44.7 bits (104), Expect = 2e-05
Identities = 34/93 (36%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 44 GSPIRRVTA-PGPVPP----------GPGSPACQFREMAREDEE---PPASRGPAKPLRP 89
G P+RR A PGP PP GP A R R E PP R PA+P +P
Sbjct: 28 GRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPARPSQP 87
Query: 90 PGSSRHAWPLAAQPPGASRQPNLPGCAVRCRRA 122
P ++R L A PP R C R R A
Sbjct: 88 PSAARRERALLANPPQRPRGDAGALCVSRPRGA 120
>gi|239508966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 44.7 bits (104), Expect = 2e-05
Identities = 34/93 (36%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 44 GSPIRRVTA-PGPVPP----------GPGSPACQFREMAREDEE---PPASRGPAKPLRP 89
G P+RR A PGP PP GP A R R E PP R PA+P +P
Sbjct: 28 GRPLRRSRARPGPCPPEGLVPRAPPPGPRPTAAATRATFRVPERRTVPPCPRRPARPSQP 87
Query: 90 PGSSRHAWPLAAQPPGASRQPNLPGCAVRCRRA 122
P ++R L A PP R C R R A
Sbjct: 88 PSAARRERALLANPPQRPRGDAGALCVSRPRGA 120
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 41.6 bits (96), Expect = 2e-04
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 26/99 (26%)
Query: 34 PVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSS 93
P A + G+ GSP+ RV+AP P PP P PP P G S
Sbjct: 48 PRGAVSAGAPGSPLYRVSAPPPAPPPP----------------PP----------PGGPS 81
Query: 94 RHAWPLAAQPPGASRQPNLPGCAVRCRRAARVSTRLRSS 132
R P A PGA P G C A + RLR S
Sbjct: 82 RSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 41.6 bits (96), Expect = 2e-04
Identities = 33/99 (33%), Positives = 38/99 (38%), Gaps = 26/99 (26%)
Query: 34 PVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSS 93
P A + G+ GSP+ RV+AP P PP P PP P G S
Sbjct: 48 PRGAVSAGAPGSPLYRVSAPPPAPPPP----------------PP----------PGGPS 81
Query: 94 RHAWPLAAQPPGASRQPNLPGCAVRCRRAARVSTRLRSS 132
R P A PGA P G C A + RLR S
Sbjct: 82 RSERPRAGLRPGAFVSPGPLGRRASCSGRAGSAGRLRCS 120
>gi|239752133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 38.5 bits (88), Expect = 0.002
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 33 GPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGS 92
GP+A S G ++APGP P PPA G A PPG+
Sbjct: 120 GPLAHLEERSEGWASTFLSAPGPQHP----------------PTPPACSGAATRREPPGN 163
Query: 93 SRHAWPLAAQPPGASRQPNLPGCAVRCRRAARVST 127
+R + + A P R+P A R RA RV T
Sbjct: 164 ARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFT 198
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 38.5 bits (88), Expect = 0.002
Identities = 30/95 (31%), Positives = 38/95 (40%), Gaps = 16/95 (16%)
Query: 33 GPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGS 92
GP+A S G ++APGP P PPA G A PPG+
Sbjct: 307 GPLAHLEERSEGWASTFLSAPGPQHP----------------PTPPACSGAATRREPPGN 350
Query: 93 SRHAWPLAAQPPGASRQPNLPGCAVRCRRAARVST 127
+R + + A P R+P A R RA RV T
Sbjct: 351 ARQSRGVGAGKPEPQRRPPRGSRAARRPRARRVFT 385
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 38.1 bits (87), Expect = 0.002
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 27 PGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEP-PASRGPAK 85
PG+ G A GS +R T P P+PP P PA R+ R P PAS GPA
Sbjct: 594 PGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPA--RRQSRRSPASPSPASPGPAS 651
Query: 86 P 86
P
Sbjct: 652 P 652
Score = 30.0 bits (66), Expect = 0.61
Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 8/76 (10%)
Query: 41 GSSGSPIRRVTAPGPVPPG---PGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAW 97
GS SP AP P+PPG PG+P R + P P P P + R +
Sbjct: 582 GSRSSP----PAP-PLPPGSGSPGTPQALPRRLVGSSLRAPTVPPPLPPTPPQPARRQSR 636
Query: 98 PLAAQPPGASRQPNLP 113
A P AS P P
Sbjct: 637 RSPASPSPASPGPASP 652
>gi|239745235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 664
Score = 37.7 bits (86), Expect = 0.003
Identities = 34/100 (34%), Positives = 40/100 (40%), Gaps = 20/100 (20%)
Query: 34 PVAAFTVGSSGSPIRRVTA--PGPVPPGPGSPACQFREMAREDEEPPAS----------R 81
P+A SS + TA PG PPGP A + R E P S
Sbjct: 95 PLALSLDSSSDQAVPSGTAGVPGRAPPGPAPSALAWPTAHRTPESQPVSSVAGLVSGSVA 154
Query: 82 GPAKPLRPPGSSRHAWPLAAQPPGAS-----RQPNLPGCA 116
GPA+ + PGS A PL PP AS P +PG A
Sbjct: 155 GPAEEMLVPGSPEIAAPL---PPSASLGPSPSSPRVPGGA 191
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 37.7 bits (86), Expect = 0.003
Identities = 34/103 (33%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 26 SPGTQCLGPVAAFTVGS---SGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASR- 81
+P T + AA +G+ SGSP A GP P G+P E PPA R
Sbjct: 44 APRTPEVRAAAAGALGNHVVSGSPAGAAGA-GPAAPAEGAPGAA-------PEPPPAGRA 95
Query: 82 -----GPAKPLRPPGSSRHAWPLAAQPPGASRQPNLPGCAVRC 119
GP +P PP R P PP A +P G A C
Sbjct: 96 RPGGGGPQRP-GPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSC 137
Score = 31.2 bits (69), Expect = 0.27
Identities = 33/111 (29%), Positives = 36/111 (32%), Gaps = 27/111 (24%)
Query: 26 SPGTQCLGPVAAFTVGSSGSPIRRVTAPGP-------VPPGPGSPACQFRE--------- 69
+PG P A G P R PGP VP GP PA + R
Sbjct: 82 APGAAPEPPPAGRARPGGGGPQR----PGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSC 137
Query: 70 ------MAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLPG 114
A PA GPAKP P + A P PG P PG
Sbjct: 138 APVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPG-PG 187
Score = 30.8 bits (68), Expect = 0.36
Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 16/96 (16%)
Query: 33 GPVAAFTVGSSGSPIRRVTAP----GPVPPGPGSPACQFREMAREDEEPPASRGPAKPLR 88
GP A + +P + P PP P +P+ PPA+ PA P
Sbjct: 221 GPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPS------------PPAAPAPAAPAA 268
Query: 89 PPGSSRHAWPLAAQPPGASRQPNLPGCAVRCRRAAR 124
P A A+PPG P AV AA+
Sbjct: 269 APPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQ 304
Score = 29.6 bits (65), Expect = 0.79
Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 34 PVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSS 93
P A TV + + P P P P + A PPA A+P P
Sbjct: 231 PAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGP 290
Query: 94 RHAWPLAAQPPGASRQPNLPGCA 116
A P A PP A++ G A
Sbjct: 291 PTAAP-AVPPPAAAQNGGSAGAA 312
>gi|11386197 forkhead box E3 [Homo sapiens]
Length = 319
Score = 37.7 bits (86), Expect = 0.003
Identities = 27/67 (40%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 28 GTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPL 87
G + P AAF SG P AP PP P + A E RE EE A RG A P
Sbjct: 3 GRSDMDPPAAF----SGFPALPAVAPSGPPPSPLAGA----EPGREPEEAAAGRGEAAPT 54
Query: 88 RPPGSSR 94
PG R
Sbjct: 55 PAPGPGR 61
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 37.4 bits (85), Expect = 0.004
Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 34 PVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSS 93
PV ++ SG P R T+P P PG P+ + PP P P
Sbjct: 179 PVLRQSISFSGLPSGRRTSPPP--PGLAGPSLSSSSFSPSSSPPPPGDLPLSP------- 229
Query: 94 RHAWPLAAQPPGASRQPNLPGCAVRCRRAARVS 126
A+ A P A R P P C CRRA +S
Sbjct: 230 -SAFSAAPGTPLARRDPT-PVCCPSCRRATPIS 260
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.4 bits (85), Expect = 0.004
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 46 PIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG 105
P R +P P+ PG P + + A PPA+ PA P +PP + R L+ +P
Sbjct: 91 PPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAA-APAAPAQPP-APRPESQLSDRPQS 148
Query: 106 ASRQPNLPGCAVRCRRAA 123
++P PG + R AA
Sbjct: 149 WEQKPRGPGRSARSAGAA 166
Score = 28.1 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 64 ACQFREMAREDEEPPA--SRGPAKP-LRPPGSSRHAWPLAAQPPGASRQPNLP 113
AC R + PA +R P KP RP G++ H A P A QP P
Sbjct: 84 ACYARRLPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAP 136
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.4 bits (85), Expect = 0.004
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 46 PIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG 105
P R +P P+ PG P + + A PPA+ PA P +PP + R L+ +P
Sbjct: 91 PPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAA-APAAPAQPP-APRPESQLSDRPQS 148
Query: 106 ASRQPNLPGCAVRCRRAA 123
++P PG + R AA
Sbjct: 149 WEQKPRGPGRSARSAGAA 166
Score = 28.1 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 64 ACQFREMAREDEEPPA--SRGPAKP-LRPPGSSRHAWPLAAQPPGASRQPNLP 113
AC R + PA +R P KP RP G++ H A P A QP P
Sbjct: 84 ACYARRLPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAP 136
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.4 bits (85), Expect = 0.004
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 46 PIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG 105
P R +P P+ PG P + + A PPA+ PA P +PP + R L+ +P
Sbjct: 91 PPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAA-APAAPAQPP-APRPESQLSDRPQS 148
Query: 106 ASRQPNLPGCAVRCRRAA 123
++P PG + R AA
Sbjct: 149 WEQRPRGPGRSARSAGAA 166
Score = 28.1 bits (61), Expect = 2.3
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 64 ACQFREMAREDEEPPA--SRGPAKP-LRPPGSSRHAWPLAAQPPGASRQPNLP 113
AC R + PA +R P KP RP G++ H A P A QP P
Sbjct: 84 ACYARRLPPRPTRSPAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQPPAP 136
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 37.0 bits (84), Expect = 0.005
Identities = 32/82 (39%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEE-PPASRGPAKPLRPPGSS-----R 94
GS G P R + P PPGP A E+ R P RGP P PPG
Sbjct: 350 GSRGFPGRGI----PGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFH 405
Query: 95 HAWPLA--AQPPGASRQPNLPG 114
PL A PPG S P LPG
Sbjct: 406 DGDPLCPNACPPGRSGYPGLPG 427
Score = 26.6 bits (57), Expect = 6.7
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 55 PVPPGP-GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLP 113
P PPGP G P + R + PP GPA PG PGA +P P
Sbjct: 277 PGPPGPPGVPGIDGIDGDRGPKGPPGPPGPA---GEPGK-----------PGAPGKPGTP 322
Query: 114 G 114
G
Sbjct: 323 G 323
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 37.0 bits (84), Expect = 0.005
Identities = 32/82 (39%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEE-PPASRGPAKPLRPPGSS-----R 94
GS G P R + P PPGP A E+ R P RGP P PPG
Sbjct: 107 GSRGFPGRGI----PGPPGPPGTAGLPGELGRVGPVGDPGRRGPPGPPGPPGPRGTIGFH 162
Query: 95 HAWPLA--AQPPGASRQPNLPG 114
PL A PPG S P LPG
Sbjct: 163 DGDPLCPNACPPGRSGYPGLPG 184
Score = 26.6 bits (57), Expect = 6.7
Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 55 PVPPGP-GSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQPNLP 113
P PPGP G P + R + PP GPA PG PGA +P P
Sbjct: 34 PGPPGPPGVPGIDGIDGDRGPKGPPGPPGPA---GEPGK-----------PGAPGKPGTP 79
Query: 114 G 114
G
Sbjct: 80 G 80
>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
Length = 1024
Score = 36.6 bits (83), Expect = 0.006
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 24 WCSPGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGP 83
W G P A+ GS+GS +RRV PGP + RE+ R RGP
Sbjct: 25 WLPEGPVPQSPPASM-YGSTGSLLRRVAGPGP----------RGRELGRVTAPCTPLRGP 73
Query: 84 AKPLRPPGSSRHAWPLAAQPPGA 106
P P + P PPGA
Sbjct: 74 PSPRVAPSPWAPSSPTGQPPPGA 96
>gi|237757312 synaptojanin 1 isoform c [Homo sapiens]
Length = 1295
Score = 36.2 bits (82), Expect = 0.008
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 11/104 (10%)
Query: 21 RSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPG----PVPPGPGSPACQFREMAR--ED 74
R+ C T GPV + + S +P R P P+ P +P Q ++ A+ E
Sbjct: 1047 RTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQ-KDPAQPLEP 1105
Query: 75 EEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQ----PNLPG 114
+ PP R A P RP R P A+ P +R+ P PG
Sbjct: 1106 KRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGAPKSPG 1149
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 36.2 bits (82), Expect = 0.008
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 21 RSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPG----PVPPGPGSPACQFREMAR--ED 74
R+ C T GPV + + S +P R P P+ P +P Q ++ A+ E
Sbjct: 1086 RTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQ-KDPAQPLEP 1144
Query: 75 EEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQ-------PNLPGCAVR 118
+ PP R A P RP R P A+ P +R+ P PG A R
Sbjct: 1145 KRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARR 1195
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 36.2 bits (82), Expect = 0.008
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 14/111 (12%)
Query: 21 RSCWCSPGTQCLGPVAAFTVGSSGSPIRRVTAPG----PVPPGPGSPACQFREMAR--ED 74
R+ C T GPV + + S +P R P P+ P +P Q ++ A+ E
Sbjct: 1086 RTSPCQSPTISEGPVPSLPIRPSRAPSRTPGPPSAQSSPIDAQPATPLPQ-KDPAQPLEP 1144
Query: 75 EEPPASRGPAKPLRPPGSSRHAWPLAAQPPGASRQ-------PNLPGCAVR 118
+ PP R A P RP R P A+ P +R+ P PG A R
Sbjct: 1145 KRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIGAPPSPGVARR 1195
>gi|140972063 protein phosphatase 1, regulatory subunit 9B [Homo
sapiens]
Length = 817
Score = 36.2 bits (82), Expect = 0.008
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 53 PGPVPPGPGSPACQFREMAREDEEPPASR-GPAKPLRPPGSSRHAWPLAAQPPGASRQPN 111
P P PP P A +E ++PP R PA+P P R P+ + G S +
Sbjct: 254 PPPPPPAPSGDAPAEKERCPAGQQPPQHRVAPARPPPKPREVRKIKPVEVEESGESEAES 313
Query: 112 LPG 114
PG
Sbjct: 314 APG 316
>gi|115387099 brain-specific angiogenesis inhibitor 2 [Homo sapiens]
Length = 1585
Score = 36.2 bits (82), Expect = 0.008
Identities = 36/128 (28%), Positives = 47/128 (36%), Gaps = 17/128 (13%)
Query: 17 CGRA--RSC-WCSPGTQCLGPVAA--FTVGSSGSPIRRVTAPGPVPPGPGSPA-CQFREM 70
CGRA R+C + PG C G A T S G P + VP GP PA
Sbjct: 208 CGRAAGRACGFAQPGCSCPGEAGAGSTTTTSPGPPAAHTLSNALVPGGPAPPAEADLHSG 267
Query: 71 AREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG----------ASRQPNLPGCAVRCR 120
+ D R +P P + WP +A PG A C++ C
Sbjct: 268 SSNDLFTTEMRYGEEPEEEP-KVKTQWPRSADEPGLYMAQTGDPAAEEWSPWSVCSLTCG 326
Query: 121 RAARVSTR 128
+ +V TR
Sbjct: 327 QGLQVRTR 334
Score = 29.3 bits (64), Expect = 1.0
Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 39 TVGSSGSPIRRVTAPGPVPPGPG 61
T G++GSP R PG VPPGPG
Sbjct: 776 TSGAAGSP-GRGRGPGTVPPGPG 797
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 35.8 bits (81), Expect = 0.011
Identities = 30/87 (34%), Positives = 32/87 (36%), Gaps = 14/87 (16%)
Query: 52 APGPVPPGPGSP-ACQFREMAREDEEPPASRGPAKPLR-------------PPGSSRHAW 97
+PGP PGP + A PPA PA P R PP A
Sbjct: 161 SPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAP 220
Query: 98 PLAAQPPGASRQPNLPGCAVRCRRAAR 124
P QPP QP G AVR AAR
Sbjct: 221 PQQQQPPPPQPQPPPEGGAVRAGGAAR 247
Score = 35.4 bits (80), Expect = 0.014
Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 52 APGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG-ASRQP 110
A P PGP P R P + P P PP + A P A PP A+R+P
Sbjct: 156 ATAPPSPGPAQPG------PRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREP 209
Query: 111 NLP 113
LP
Sbjct: 210 PLP 212
Score = 33.1 bits (74), Expect = 0.072
Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 36 AAFTVGSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRH 95
A ++ P P P P +PA R A PP S GPA+P P + R
Sbjct: 118 APAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP-SPGPAQP--GPRAQRA 174
Query: 96 AWPLAAQPPGASRQP 110
A PLAA PP + P
Sbjct: 175 A-PLAAPPPAPAAPP 188
Score = 29.3 bits (64), Expect = 1.0
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 4/78 (5%)
Query: 46 PIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLAAQPPG 105
P R T P P G+PA PP P P + R A A PP
Sbjct: 102 PRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPP- 160
Query: 106 ASRQPNLPGCAVRCRRAA 123
S P PG R +RAA
Sbjct: 161 -SPGPAQPG--PRAQRAA 175
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.4 bits (80), Expect = 0.014
Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 12/74 (16%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLA 100
G+ G P PGP PGSP C A ++ P +GP PG
Sbjct: 1072 GNKGDPASHFGPPGPKGE-PGSPGCPGHFGASGEQGLPGIQGPRGSPGRPG--------- 1121
Query: 101 AQPPGASRQPNLPG 114
PPG+S P PG
Sbjct: 1122 --PPGSSGPPGCPG 1133
Score = 32.0 bits (71), Expect = 0.16
Identities = 31/86 (36%), Positives = 34/86 (39%), Gaps = 22/86 (25%)
Query: 39 TVGSSGSPIRRVTAPGPVP-PG-------PGSPACQFREMAREDEEPPASRGPAKPLRPP 90
T G+SG + V PGPV PG PGSP PP RG P PP
Sbjct: 1188 TKGASG--LHDVGPPGPVGIPGLKGERGDPGSPGIS----------PPGPRGKKGPPGPP 1235
Query: 91 GSSRHAWPLAA--QPPGASRQPNLPG 114
GSS P A + P P PG
Sbjct: 1236 GSSGPPGPAGATGRAPKDIPDPGPPG 1261
Score = 31.6 bits (70), Expect = 0.21
Identities = 27/74 (36%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLA 100
G G P VT P P+ PG P R D PP GP L PG A
Sbjct: 350 GHPGPPGVLVTPPLPLKGPPGDPGFPGRYGETGDVGPP---GPPGLLGRPG---EACAGM 403
Query: 101 AQPPGASRQPNLPG 114
PPG P LPG
Sbjct: 404 IGPPGPQGFPGLPG 417
Score = 29.6 bits (65), Expect = 0.79
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 57 PPG-PGSPACQFRE-MAREDEEP----------PASRGPAKPLRPPGSSRHAWPLA---A 101
PPG PG P R+ A E +P P +G PL PPG + P
Sbjct: 576 PPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFP 635
Query: 102 QPPGASRQPNLPG 114
PPG P +PG
Sbjct: 636 GPPGERGHPGVPG 648
Score = 28.5 bits (62), Expect = 1.8
Identities = 27/82 (32%), Positives = 29/82 (35%), Gaps = 18/82 (21%)
Query: 41 GSSGSPIRRVTAPGPVP---PGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAW 97
GSSG P A G P P PG P D+ PP GP PPG
Sbjct: 1236 GSSGPP-GPAGATGRAPKDIPDPGPPG---------DQGPPGPDGPRGAPGPPGLPGSVD 1285
Query: 98 PLAAQP-----PGASRQPNLPG 114
L +P PG P PG
Sbjct: 1286 LLRGEPGDCGLPGPPGPPGPPG 1307
Score = 26.6 bits (57), Expect = 6.7
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 41 GSSGSPIRRVTAPGPVPPGPGSPACQFREMAREDEEPPASRGPAKPLRPPGSSRHAWPLA 100
G G+ PGP+ P PG P R+ ++ D P G PG
Sbjct: 484 GEKGNEGLCACEPGPMGP-PGPPGLPGRQGSKGDLGLPGWLGTKGD---PG--------- 530
Query: 101 AQPPGASRQPNLPG 114
PPGA P LPG
Sbjct: 531 --PPGAEGPPGLPG 542
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 35.4 bits (80), Expect = 0.014
Identities = 28/87 (32%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 27 PGTQCLGPVAAFTVGSSGSPIRRVTAPGPVPPG----PGSPACQFRE-----MAREDEEP 77
PG GP +A T G+ G P + P P PPG PG Q + P
Sbjct: 268 PGAAGHGPPSAGTPGA-GHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGP 326
Query: 78 PASRGPAKPLRPPGSSRHAWPLAAQPP 104
P S G P PPG P PP
Sbjct: 327 PGSGGQPPPRPPPGMPHPGPPPMGMPP 353
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,221,303
Number of Sequences: 37866
Number of extensions: 578426
Number of successful extensions: 5656
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 705
Number of HSP's that attempted gapping in prelim test: 4132
Number of HSP's gapped (non-prelim): 2042
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.