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Search of human proteins with 169210116
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169210116 PREDICTED: hypothetical protein [Homo sapiens]
(234 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169210116 PREDICTED: hypothetical protein [Homo sapiens] 482 e-136
gi|169172746 PREDICTED: hypothetical protein [Homo sapiens] 474 e-134
gi|169162893 PREDICTED: hypothetical protein [Homo sapiens] 458 e-129
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens] 35 0.072
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.12
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 34 0.12
gi|24497460 Shaw-related voltage-gated potassium channel protein... 33 0.21
gi|239752795 PREDICTED: similar to transmembrane protein 125 [Ho... 33 0.28
gi|239747324 PREDICTED: hypothetical protein XP_002346440 [Homo ... 33 0.28
gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo ... 33 0.28
gi|239741149 PREDICTED: hypothetical protein XP_002342147 [Homo ... 33 0.28
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 32 0.47
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 32 0.47
gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens] 32 0.47
gi|162329612 phosphodiesterase 4A isoform 3 [Homo sapiens] 32 0.47
gi|162329610 phosphodiesterase 4A isoform 2 [Homo sapiens] 32 0.47
gi|162329608 phosphodiesterase 4A isoform 1 [Homo sapiens] 32 0.47
gi|91982772 mucin 17 [Homo sapiens] 32 0.47
gi|27734799 REST corepressor 2 [Homo sapiens] 32 0.47
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.61
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 32 0.61
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 32 0.61
gi|217330559 unc-51-like kinase 2 [Homo sapiens] 31 0.80
gi|217330557 unc-51-like kinase 2 [Homo sapiens] 31 0.80
gi|148612879 polyhomeotic like 3 [Homo sapiens] 31 0.80
gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Ho... 31 1.0
gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Ho... 31 1.0
gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Ho... 31 1.0
gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Hom... 31 1.0
gi|239747867 PREDICTED: hypothetical protein [Homo sapiens] 31 1.0
>gi|169210116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 482 bits (1240), Expect = e-136
Identities = 234/234 (100%), Positives = 234/234 (100%)
Query: 1 MVHPGTLLFSLHLRFPAVYAACDSIHGLVTPRPFPGTTGLCLYQLLNTSPRTSMANTELL 60
MVHPGTLLFSLHLRFPAVYAACDSIHGLVTPRPFPGTTGLCLYQLLNTSPRTSMANTELL
Sbjct: 1 MVHPGTLLFSLHLRFPAVYAACDSIHGLVTPRPFPGTTGLCLYQLLNTSPRTSMANTELL 60
Query: 61 ILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNRIGGATNIQNPIASPPLHPRPAT 120
ILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNRIGGATNIQNPIASPPLHPRPAT
Sbjct: 61 ILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNRIGGATNIQNPIASPPLHPRPAT 120
Query: 121 HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQS 180
HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQS
Sbjct: 121 HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQS 180
Query: 181 QPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL 234
QPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL
Sbjct: 181 QPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL 234
>gi|169172746 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 474 bits (1219), Expect = e-134
Identities = 232/234 (99%), Positives = 232/234 (99%)
Query: 1 MVHPGTLLFSLHLRFPAVYAACDSIHGLVTPRPFPGTTGLCLYQLLNTSPRTSMANTELL 60
MVHPGTLLFSLHLRFPAVYAACDSIHGLVTPRPFPGTTGLCLYQLLNTSPRTSMANTELL
Sbjct: 1 MVHPGTLLFSLHLRFPAVYAACDSIHGLVTPRPFPGTTGLCLYQLLNTSPRTSMANTELL 60
Query: 61 ILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNRIGGATNIQNPIASPPLHPRPAT 120
ILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNRIGGATNIQNPIASPPLHPRPAT
Sbjct: 61 ILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNRIGGATNIQNPIASPPLHPRPAT 120
Query: 121 HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQS 180
HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLL SHSIWRKTQSARVGRQS
Sbjct: 121 HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLLYSHSIWRKTQSARVGRQS 180
Query: 181 QPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL 234
QPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL
Sbjct: 181 QPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL 234
>gi|169162893 PREDICTED: hypothetical protein [Homo sapiens]
Length = 234
Score = 458 bits (1179), Expect = e-129
Identities = 224/234 (95%), Positives = 226/234 (96%)
Query: 1 MVHPGTLLFSLHLRFPAVYAACDSIHGLVTPRPFPGTTGLCLYQLLNTSPRTSMANTELL 60
M PGTLLFSLHLRFPA+YAACDSIHGLVTPRP PGTTGLCLY LLNTSPRTSMA TELL
Sbjct: 1 MARPGTLLFSLHLRFPAIYAACDSIHGLVTPRPSPGTTGLCLYLLLNTSPRTSMAKTELL 60
Query: 61 ILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNRIGGATNIQNPIASPPLHPRPAT 120
ILSPYPLLCGFPTS KDSFILSATQARRLKSSPSPGNRI GATNIQNPIASPPLHPRPAT
Sbjct: 61 ILSPYPLLCGFPTSAKDSFILSATQARRLKSSPSPGNRIEGATNIQNPIASPPLHPRPAT 120
Query: 121 HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQS 180
HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLL CSHSIWRKTQSARVGRQS
Sbjct: 121 HFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLLCSHSIWRKTQSARVGRQS 180
Query: 181 QPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL 234
+PPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL
Sbjct: 181 RPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLVLASKAGPHLL 234
>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
Length = 1035
Score = 34.7 bits (78), Expect = 0.072
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 23/122 (18%)
Query: 100 GGATNI-QNPIASPPLHPRPATHFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQT 158
G AT++ +P+ +P L P C S L GTS S+ T I P+
Sbjct: 425 GEATSVAHSPLKTPSLPTPPG------CSQSELLP-----GTSPDSKPTATFILLTPTSP 473
Query: 159 RLLPCSHSIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPS 218
L P + + W + S + R PP P +PP + QS G S P TSHLS S
Sbjct: 474 TL-PVTDTTWPPSTS-QADRSPMPPDP--PAPP---TIQSTLLGMVSSP----TSHLSAS 522
Query: 219 AP 220
AP
Sbjct: 523 AP 524
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 33.9 bits (76), Expect = 0.12
Identities = 48/188 (25%), Positives = 68/188 (36%), Gaps = 24/188 (12%)
Query: 30 TPRPFPGTTGLCLYQLLNTSPRTSMANTELLILSPYPLLCGFP-TSTKDSFILSATQARR 88
T P PGT + + R+ A TE+ + P P P T + SA++
Sbjct: 164 TSGPTPGTPSPAMAR------RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHST 217
Query: 89 LKSSPSPGNRIGGATNIQNPIASPPLHPRPATHFCLNCCSSLLTDLCFHVGTSVFSRTTT 148
+ SP+ R +Q P + SS T L + +R T
Sbjct: 218 TEPSPAARRRPSAGGGLQRPAS--------------RSLSSSATPLSSPARSGPSARGTP 263
Query: 149 REICSHPSQTRLLPCSHSIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSARDGQQSQPP 208
R +HPSQ + P R Q + + P SS PLA + SA Q+ P
Sbjct: 264 RAP-AHPSQPK--PKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPT 320
Query: 209 SPLTSHLS 216
P T H S
Sbjct: 321 LPATPHSS 328
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 33.9 bits (76), Expect = 0.12
Identities = 24/80 (30%), Positives = 32/80 (40%)
Query: 155 PSQTRLLPCSHSIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSH 214
PS+ +P I + ++ GR SQ S P T G S P+P S
Sbjct: 1147 PSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPTQPEPTGGGGGGGSSPSPAPAMSP 1206
Query: 215 LSPSAPRVLVLASKAGPHLL 234
+ PS V AS +GP L
Sbjct: 1207 VPPSPSPVPTPASPSGPATL 1226
>gi|24497460 Shaw-related voltage-gated potassium channel protein 3
[Homo sapiens]
Length = 757
Score = 33.1 bits (74), Expect = 0.21
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 166 SIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSHLSPSAPR 221
S +R Q A + + PP P S PP L Q QQ P P S P APR
Sbjct: 8 SSFRGRQGASKQQPAPPPQPPESPPPPPLPPQQ----QQPAQPGPAASPAGPPAPR 59
>gi|239752795 PREDICTED: similar to transmembrane protein 125 [Homo
sapiens]
Length = 145
Score = 32.7 bits (73), Expect = 0.28
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 33/158 (20%)
Query: 77 DSFILSATQARRLKSSPSPGNRIGGATNIQNPIAS-------PPLHPRPATHFC-----L 124
DS S +SP+ R+ T+ P++S PPL R AT + +
Sbjct: 4 DSMAASGRAGAGAAASPA---RVRPVTSSTRPLSSTTRASAPPPLRSR-ATWWAWRMQFM 59
Query: 125 NCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQSQPPS 184
+C + L++ CF TS S+ +T + S S RLL S + PP+
Sbjct: 60 SCTAELIS--CF-TRTSRASKQSTVPVASRHSPERLLVVDSS-------------ATPPA 103
Query: 185 PLTSSPPLALSTQSA-RDGQQSQPPSPLTSHLSPSAPR 221
P ++ P A + QSA R G S ++ +S +PR
Sbjct: 104 PQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPR 141
>gi|239747324 PREDICTED: hypothetical protein XP_002346440 [Homo
sapiens]
Length = 145
Score = 32.7 bits (73), Expect = 0.28
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 33/158 (20%)
Query: 77 DSFILSATQARRLKSSPSPGNRIGGATNIQNPIAS-------PPLHPRPATHFC-----L 124
DS S +SP+ R+ T+ P++S PPL R AT + +
Sbjct: 4 DSMAASGRAGAGAAASPA---RVRPVTSSTRPLSSTTRASAPPPLRSR-ATWWAWRMQFM 59
Query: 125 NCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQSQPPS 184
+C + L++ CF TS S+ +T + S S RLL S + PP+
Sbjct: 60 SCTAELIS--CF-TRTSRASKQSTVPVASRHSPERLLVVDSS-------------ATPPA 103
Query: 185 PLTSSPPLALSTQSA-RDGQQSQPPSPLTSHLSPSAPR 221
P ++ P A + QSA R G S ++ +S +PR
Sbjct: 104 PQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPR 141
>gi|239741486 PREDICTED: hypothetical protein XP_002342213 [Homo
sapiens]
Length = 233
Score = 32.7 bits (73), Expect = 0.28
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 155 PSQTRLLPCSHSIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSARDGQQSQPPSP 210
PS++R L C+ + ++ + G S PPSPLT PP S ++SQ PSP
Sbjct: 93 PSKSRAL-CNRGLRSTSRCTQQGLPSVPPSPLTPLPP------SPTAPRRSQYPSP 141
>gi|239741149 PREDICTED: hypothetical protein XP_002342147 [Homo
sapiens]
Length = 145
Score = 32.7 bits (73), Expect = 0.28
Identities = 43/158 (27%), Positives = 67/158 (42%), Gaps = 33/158 (20%)
Query: 77 DSFILSATQARRLKSSPSPGNRIGGATNIQNPIAS-------PPLHPRPATHFC-----L 124
DS S +SP+ R+ T+ P++S PPL R AT + +
Sbjct: 4 DSMAASGRAGAGAAASPA---RVRPVTSSTRPLSSTTRASAPPPLRSR-ATWWAWRMQFM 59
Query: 125 NCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQSQPPS 184
+C + L++ CF TS S+ +T + S S RLL S + PP+
Sbjct: 60 SCTAELIS--CF-TRTSRASKQSTVPVASRHSPERLLVVDSS-------------ATPPA 103
Query: 185 PLTSSPPLALSTQSA-RDGQQSQPPSPLTSHLSPSAPR 221
P ++ P A + QSA R G S ++ +S +PR
Sbjct: 104 PQPATRPTATTKQSAERRGCWDHHSSTCSASMSGGSPR 141
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 32.0 bits (71), Expect = 0.47
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 164 SHSIWRKTQSARVGRQSQPPS---PLTSSPPLALSTQSARDGQQSQPPSPLTSHLS---- 216
S +W+ + R +QPPS P PP + S+R + PP L
Sbjct: 15 SKEVWKPSSLIHPARSNQPPSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPP 74
Query: 217 --PSAPRVLVLASKAGP 231
P+AP VL AGP
Sbjct: 75 PPPAAPHVLGARVAAGP 91
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 32.0 bits (71), Expect = 0.47
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 164 SHSIWRKTQSARVGRQSQPPS---PLTSSPPLALSTQSARDGQQSQPPSPLTSHLS---- 216
S +W+ + R +QPPS P PP + S+R + PP L
Sbjct: 15 SKEVWKPSSLIHPARSNQPPSRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPP 74
Query: 217 --PSAPRVLVLASKAGP 231
P+AP VL AGP
Sbjct: 75 PPPAAPHVLGARVAAGP 91
>gi|66277202 podocalyxin-like isoform 1 precursor [Homo sapiens]
Length = 558
Score = 32.0 bits (71), Expect = 0.47
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 128 SSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQ--SARVGRQSQPPSP 185
++LL + HV + T+ ++ + SQ+ + S I ++TQ S+++ S PS
Sbjct: 233 TTLLETVFHHVSQAGLELLTSGDLPTLASQSAGITASSVISQRTQQTSSQMPASSTAPSS 292
Query: 186 LTS----SPPLALSTQSARDGQQSQPPSPLTSHLSPSAP 220
+ SP AL T + + S P + T+H P P
Sbjct: 293 QETVQPTSPATALRTPTLPETMSSSPTAASTTHRYPKTP 331
>gi|162329612 phosphodiesterase 4A isoform 3 [Homo sapiens]
Length = 825
Score = 32.0 bits (71), Expect = 0.47
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 30/180 (16%)
Query: 52 TSMANTELLILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNR---IGGATNIQNP 108
TS A+ E LI++P+ + S + +F L L + P P N+ +GG T P
Sbjct: 107 TSEAHAEDLIVTPFAQVLASLRSVRSNFSL-------LTNVPVPSNKRSPLGGPT----P 155
Query: 109 IASPPLHPRPATHFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIW 168
+ L L D C ++ + + E+ SH + L + +
Sbjct: 156 VCKATLSEETCQQLARETLEEL--DWCLEQLETMQTYRSVSEMASHKFKRML---NRELT 210
Query: 169 RKTQSARVGRQSQPPSPLT-----SSPPLALSTQSARDGQQ------SQPPSPLTSHLSP 217
++ +R G Q T + + T R+ QQ SQPP P HL P
Sbjct: 211 HLSEMSRSGNQVSEYISTTFLDKQNEVEIPSPTMKEREKQQAPRPRPSQPPPPPVPHLQP 270
>gi|162329610 phosphodiesterase 4A isoform 2 [Homo sapiens]
Length = 860
Score = 32.0 bits (71), Expect = 0.47
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 30/180 (16%)
Query: 52 TSMANTELLILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNR---IGGATNIQNP 108
TS A+ E LI++P+ + S + +F L L + P P N+ +GG T P
Sbjct: 142 TSEAHAEDLIVTPFAQVLASLRSVRSNFSL-------LTNVPVPSNKRSPLGGPT----P 190
Query: 109 IASPPLHPRPATHFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIW 168
+ L L D C ++ + + E+ SH + L + +
Sbjct: 191 VCKATLSEETCQQLARETLEEL--DWCLEQLETMQTYRSVSEMASHKFKRML---NRELT 245
Query: 169 RKTQSARVGRQSQPPSPLT-----SSPPLALSTQSARDGQQ------SQPPSPLTSHLSP 217
++ +R G Q T + + T R+ QQ SQPP P HL P
Sbjct: 246 HLSEMSRSGNQVSEYISTTFLDKQNEVEIPSPTMKEREKQQAPRPRPSQPPPPPVPHLQP 305
>gi|162329608 phosphodiesterase 4A isoform 1 [Homo sapiens]
Length = 886
Score = 32.0 bits (71), Expect = 0.47
Identities = 42/180 (23%), Positives = 67/180 (37%), Gaps = 30/180 (16%)
Query: 52 TSMANTELLILSPYPLLCGFPTSTKDSFILSATQARRLKSSPSPGNR---IGGATNIQNP 108
TS A+ E LI++P+ + S + +F L L + P P N+ +GG T P
Sbjct: 168 TSEAHAEDLIVTPFAQVLASLRSVRSNFSL-------LTNVPVPSNKRSPLGGPT----P 216
Query: 109 IASPPLHPRPATHFCLNCCSSLLTDLCFHVGTSVFSRTTTREICSHPSQTRLLPCSHSIW 168
+ L L D C ++ + + E+ SH + L + +
Sbjct: 217 VCKATLSEETCQQLARETLEEL--DWCLEQLETMQTYRSVSEMASHKFKRML---NRELT 271
Query: 169 RKTQSARVGRQSQPPSPLT-----SSPPLALSTQSARDGQQ------SQPPSPLTSHLSP 217
++ +R G Q T + + T R+ QQ SQPP P HL P
Sbjct: 272 HLSEMSRSGNQVSEYISTTFLDKQNEVEIPSPTMKEREKQQAPRPRPSQPPPPPVPHLQP 331
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 32.0 bits (71), Expect = 0.47
Identities = 50/202 (24%), Positives = 72/202 (35%), Gaps = 40/202 (19%)
Query: 27 GLVTPRPFPGTTGLCLYQLLNTSPRTSMANTELLILSPYPLLCGFPTSTKDSFILSATQA 86
G P PG L +L ++ T +AN+E LS P+ P +T S T A
Sbjct: 2679 GSSMPTSTPGERSTPLTNILVST--TLLANSEASTLSTTPVDTSTPVTTSAEASSSPTTA 2736
Query: 87 RRLK---SSPSPGNRIGGATNIQNPIASPPLHPRPATHFCLNCCSSLLTDLCFHVGTSV- 142
S+PS G+ P+ S + P + S+ D V TS
Sbjct: 2737 EGTSMRISTPSDGS---------TPLTSILVSTLPVASSEASTVSTTAVDTSIPVTTSTE 2787
Query: 143 -FSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSARD 201
S TT E+ S P+ T S+ +PLTS P S+
Sbjct: 2788 ASSSPTTAEVTSMPTST--------------------PSETSTPLTSMPVNHTPVASSEA 2827
Query: 202 GQQSQPP----SPLTSHLSPSA 219
G S P +P+T+ S+
Sbjct: 2828 GTLSTTPVDTSTPVTTSTKASS 2849
>gi|27734799 REST corepressor 2 [Homo sapiens]
Length = 523
Score = 32.0 bits (71), Expect = 0.47
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 161 LPCSHSIWRKTQSARVGR-------QSQPPSPLTSSPPLALSTQSARDGQQSQPPSPLTS 213
LP + ++ R+ + GR +QPP PL P LA SAR G Q PP+ + +
Sbjct: 457 LPTAPTLLRQPPPLQQGRFLQPRLAPNQPPPPLIR-PALAAPRHSARPGPQ-PPPTLIGA 514
Query: 214 HLSPSAP 220
L P AP
Sbjct: 515 PLEPPAP 521
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 31.6 bits (70), Expect = 0.61
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 155 PSQTRLLPCSHSIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSARDGQQSQPPSPLTSH 214
P+Q LLP S Q V S PP+P + PPL+L G QPPS +
Sbjct: 1975 PAQQMLLPMVDS-----QLPVVNFGSLPPAPPPAPPPLSLLPV----GPALQPPS--LAV 2023
Query: 215 LSPSAPRVLVLASKAGP 231
P AP VL S A P
Sbjct: 2024 RPPPAPATRVLPSPARP 2040
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 31.6 bits (70), Expect = 0.61
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 140 TSVFSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSA 199
TS S +++ S S++R L H WR++ + GR + S +SS + S+ S+
Sbjct: 1437 TSEASSSSSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSS 1496
Query: 200 RDGQ-QSQPPSP 210
+ +S+ PSP
Sbjct: 1497 SSSRSRSRSPSP 1508
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 31.6 bits (70), Expect = 0.61
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 63 SPYPLLCGFPTSTKDSFILSATQARR------LKSSPSPGNRIGGATNIQNPIASPPL-H 115
SP+PLL GFP + D +L+ T++ R L G GG P ++PP H
Sbjct: 478 SPFPLLDGFPGADPDD-VLTVTESSRGLNLECLWEKARRGAGRGGGAPAWQPASAPPAPH 536
Query: 116 PRPATHF 122
P+ F
Sbjct: 537 ANPSNPF 543
>gi|217330559 unc-51-like kinase 2 [Homo sapiens]
Length = 1036
Score = 31.2 bits (69), Expect = 0.80
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 30 TPRPF-PGTTGLCLYQLLNTSPRTSMANTELLILSPYPLLCGFPTSTKDSFILSATQA 86
+P+P PG+ G + L +SPR+S + +P P + G PT T F + TQA
Sbjct: 562 SPQPSRPGSLGTSPTKHLGSSPRSS----DWFFKTPLPTIIGSPTKTTAPFKIPKTQA 615
>gi|217330557 unc-51-like kinase 2 [Homo sapiens]
Length = 1036
Score = 31.2 bits (69), Expect = 0.80
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 30 TPRPF-PGTTGLCLYQLLNTSPRTSMANTELLILSPYPLLCGFPTSTKDSFILSATQA 86
+P+P PG+ G + L +SPR+S + +P P + G PT T F + TQA
Sbjct: 562 SPQPSRPGSLGTSPTKHLGSSPRSS----DWFFKTPLPTIIGSPTKTTAPFKIPKTQA 615
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 31.2 bits (69), Expect = 0.80
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 179 QSQPPSPLTSSP-PLALSTQSARDGQQSQPPSPLTSHLSPSAPRVLV 224
QSQ SP+ S P PL +S ++ QQS SP H +P +++
Sbjct: 380 QSQHCSPIQSHPSPLTVSPNQSQSAQQSVVVSPPPPHSPSQSPTIII 426
>gi|68161504 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 155 PSQTRLLPCSHSIWRKTQSARVGRQSQ--PPSPLTSSPPL--ALSTQSARDGQQSQPPSP 210
P T + + I + QS GR P+P PPL ALST S R S PP P
Sbjct: 292 PIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPP 351
Query: 211 LTSHLSPSAPRVLVLASKAGP 231
+ P P L + A P
Sbjct: 352 VP---PPPPPPATALQAPAVP 369
>gi|68161502 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 155 PSQTRLLPCSHSIWRKTQSARVGRQSQ--PPSPLTSSPPL--ALSTQSARDGQQSQPPSP 210
P T + + I + QS GR P+P PPL ALST S R S PP P
Sbjct: 292 PIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPP 351
Query: 211 LTSHLSPSAPRVLVLASKAGP 231
+ P P L + A P
Sbjct: 352 VP---PPPPPPATALQAPAVP 369
>gi|68161500 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 155 PSQTRLLPCSHSIWRKTQSARVGRQSQ--PPSPLTSSPPL--ALSTQSARDGQQSQPPSP 210
P T + + I + QS GR P+P PPL ALST S R S PP P
Sbjct: 292 PIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPP 351
Query: 211 LTSHLSPSAPRVLVLASKAGP 231
+ P P L + A P
Sbjct: 352 VP---PPPPPPATALQAPAVP 369
>gi|4507913 Wiskott-Aldrich syndrome protein family member 1 [Homo
sapiens]
Length = 559
Score = 30.8 bits (68), Expect = 1.0
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 155 PSQTRLLPCSHSIWRKTQSARVGRQSQ--PPSPLTSSPPL--ALSTQSARDGQQSQPPSP 210
P T + + I + QS GR P+P PPL ALST S R S PP P
Sbjct: 292 PIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPP 351
Query: 211 LTSHLSPSAPRVLVLASKAGP 231
+ P P L + A P
Sbjct: 352 VP---PPPPPPATALQAPAVP 369
>gi|239747867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 30.8 bits (68), Expect = 1.0
Identities = 39/150 (26%), Positives = 58/150 (38%), Gaps = 26/150 (17%)
Query: 87 RRLKSSPSPGNRIG----GATNIQNPIASPPLHPRPATHFCLNCCSSLLTDLCFHVGTSV 142
R L SP P +R G +++ +A+P L P P TH H T +
Sbjct: 30 RPLCGSPGPESRCQPLNRGTYPVRSQVAAPLLSPEPQTH---------------HPDTPL 74
Query: 143 FSRTTTREICSHPSQTRLLPCSHSIWRKTQSARVGRQSQPPSPLTSSPPLALSTQSARDG 202
+ H S + +P + + Q +R G Q PS L+ + L L + G
Sbjct: 75 WPWLLCLPQAVHASGMQHIPSAQA---SKQRSRGGAQ---PSTLSPAEEL-LRPGAGAVG 127
Query: 203 QQSQPPSPLTSHLSPSAPRVLVLASKAGPH 232
S P P S A LV+ S+A P+
Sbjct: 128 LPSPDPGPAPSGKKLPAGPDLVVQSRAAPY 157
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,418,521
Number of Sequences: 37866
Number of extensions: 606213
Number of successful extensions: 3737
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 3516
Number of HSP's gapped (non-prelim): 362
length of query: 234
length of database: 18,247,518
effective HSP length: 99
effective length of query: 135
effective length of database: 14,498,784
effective search space: 1957335840
effective search space used: 1957335840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.