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Search of human proteins with 169208604
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]
(223 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169208604 PREDICTED: hypothetical protein [Homo sapiens] 474 e-134
gi|113425231 PREDICTED: hypothetical protein [Homo sapiens] 474 e-134
gi|239754378 PREDICTED: similar to hCG2030094 [Homo sapiens] 39 0.004
gi|239748985 PREDICTED: similar to hCG2030094 [Homo sapiens] 39 0.004
gi|239743005 PREDICTED: hypothetical protein XP_002342716 [Homo ... 39 0.004
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 39 0.004
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 39 0.004
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 39 0.005
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 39 0.005
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 38 0.006
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 38 0.006
gi|157785645 SPEG complex locus [Homo sapiens] 38 0.008
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 38 0.008
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 37 0.014
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 37 0.014
gi|126090909 engrailed homeobox 1 [Homo sapiens] 36 0.023
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 36 0.030
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 36 0.030
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 36 0.030
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 36 0.030
gi|89257348 homeo box HB9 [Homo sapiens] 35 0.039
gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens] 35 0.039
gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo sapi... 35 0.039
gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo ... 35 0.051
gi|6912372 forkhead box D3 [Homo sapiens] 35 0.051
gi|157364934 fibrosin [Homo sapiens] 35 0.051
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 34 0.088
gi|12751477 forkhead box L2 [Homo sapiens] 33 0.15
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 33 0.15
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 33 0.15
>gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 474 bits (1221), Expect = e-134
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MGTSDMWVTHRERRRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEP 60
MGTSDMWVTHRERRRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEP
Sbjct: 1 MGTSDMWVTHRERRRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEP 60
Query: 61 RACSELKVPGTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGS 120
RACSELKVPGTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGS
Sbjct: 61 RACSELKVPGTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGS 120
Query: 121 GPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAA 180
GPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAA
Sbjct: 121 GPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAA 180
Query: 181 AVTAAAGSPKPLLLCQHLLPLLPPPPPRPHRSHRRCGDYCRAR 223
AVTAAAGSPKPLLLCQHLLPLLPPPPPRPHRSHRRCGDYCRAR
Sbjct: 181 AVTAAAGSPKPLLLCQHLLPLLPPPPPRPHRSHRRCGDYCRAR 223
>gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]
Length = 223
Score = 474 bits (1221), Expect = e-134
Identities = 223/223 (100%), Positives = 223/223 (100%)
Query: 1 MGTSDMWVTHRERRRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEP 60
MGTSDMWVTHRERRRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEP
Sbjct: 1 MGTSDMWVTHRERRRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEP 60
Query: 61 RACSELKVPGTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGS 120
RACSELKVPGTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGS
Sbjct: 61 RACSELKVPGTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGS 120
Query: 121 GPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAA 180
GPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAA
Sbjct: 121 GPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAA 180
Query: 181 AVTAAAGSPKPLLLCQHLLPLLPPPPPRPHRSHRRCGDYCRAR 223
AVTAAAGSPKPLLLCQHLLPLLPPPPPRPHRSHRRCGDYCRAR
Sbjct: 181 AVTAAAGSPKPLLLCQHLLPLLPPPPPRPHRSHRRCGDYCRAR 223
>gi|239754378 PREDICTED: similar to hCG2030094 [Homo sapiens]
Length = 282
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 114 GFLEEGSGPAQDRDRRGLTLGRRDRHCLP-IPHRRLRRDPSAASRAGRLGSPLGYRPRLL 172
G L G G A+ LG RH LP PH R R + R G LG+ G R +
Sbjct: 161 GQLHHGHGAAR--------LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAV 212
Query: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLL 202
AAAA A A + AA + L L L PLL
Sbjct: 213 AAAARARAVLLGAAARAQ-LQLQLLLRPLL 241
>gi|239748985 PREDICTED: similar to hCG2030094 [Homo sapiens]
Length = 254
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 114 GFLEEGSGPAQDRDRRGLTLGRRDRHCLP-IPHRRLRRDPSAASRAGRLGSPLGYRPRLL 172
G L G G A+ LG RH LP PH R R + R G LG+ G R +
Sbjct: 133 GQLHHGHGAAR--------LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAV 184
Query: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLL 202
AAAA A A + AA + L L L PLL
Sbjct: 185 AAAARARAVLLGAAARAQ-LQLQLLLRPLL 213
>gi|239743005 PREDICTED: hypothetical protein XP_002342716 [Homo
sapiens]
Length = 254
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/90 (38%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 114 GFLEEGSGPAQDRDRRGLTLGRRDRHCLP-IPHRRLRRDPSAASRAGRLGSPLGYRPRLL 172
G L G G A+ LG RH LP PH R R + R G LG+ G R +
Sbjct: 133 GQLHHGHGAAR--------LGAAGRHALPPAPHGRRRPQEAGTRRQGVLGADDGVRHCAV 184
Query: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLL 202
AAAA A A + AA + L L L PLL
Sbjct: 185 AAAARARAVLLGAAARAQ-LQLQLLLRPLL 213
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 38.9 bits (89), Expect = 0.004
Identities = 46/156 (29%), Positives = 57/156 (36%), Gaps = 23/156 (14%)
Query: 62 ACSELKVPGTPPLLS-RLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGS 120
A S +PG L + + HS AGGGG G G GG G ++ GS
Sbjct: 4 AASNPYLPGNSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGG--------GGGGMQPGS 55
Query: 121 GPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAA 180
RG D + + + AAS G + S L AAAAAA
Sbjct: 56 AAVTSGAYRG------DPSSVKMVQSDFMQGAMAASNGGHMLSHAHQWVTALPHAAAAAA 109
Query: 181 AVTAAA--------GSPKPLLLCQHLLPLLPPPPPR 208
A AAA GS + P PPPPP+
Sbjct: 110 AAAAAAVEASSPWSGSAVGMAGSPQQPPQPPPPPPQ 145
Score = 31.2 bits (69), Expect = 0.74
Identities = 35/117 (29%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 75 LSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGSGPAQDRDRRGLTLG 134
++ L H+A AA ++PW + G Q + P Q D +G G
Sbjct: 98 VTALPHAAAAAAAAAAAAVEASSPWSGSAVGMAGS--PQQPPQPPPPPPQGPDVKG-GAG 154
Query: 135 RRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAAAVTAAAGSPKP 191
R D H H R G P G+ AAAAAAAAA AAA + P
Sbjct: 155 RDDLHAGTALHHRGPPHLGPPPPPPHQGHPGGWG----AAAAAAAAAAAAAAAAHLP 207
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 38.9 bits (89), Expect = 0.004
Identities = 43/133 (32%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 81 SARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGSGPAQDRDRRGLTLGRRDRHC 140
+A AA AA + P P G GS + + +RG G +D C
Sbjct: 227 AAAAAAAAAAAAAAAAAAYYQVSAAGPQPKAAAGAGGPGSLSYRCKRKRG---GAKD--C 281
Query: 141 LPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAAAVTAAAGSPKPLLLCQHLLP 200
L PH RR L P Y+ + AAAAAAAAA AAA + L HL+
Sbjct: 282 LLAPHAGARR---------LLLLPRSYKAK--AAAAAAAAAAAAAAAAGATCLERFHLVN 330
Query: 201 LLPPPPPRPHRSH 213
PPP H H
Sbjct: 331 GFCPPPHHHHHHH 343
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 38.5 bits (88), Expect = 0.005
Identities = 25/58 (43%), Positives = 27/58 (46%)
Query: 152 PSAASRAGRLGSPLGYRPRLLAAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPPPPPRP 209
PSA+ S +AAAAAAAA AAA SP LL L PPPP P
Sbjct: 116 PSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPP 173
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 38.5 bits (88), Expect = 0.005
Identities = 45/122 (36%), Positives = 49/122 (40%), Gaps = 10/122 (8%)
Query: 71 TPPLLSRLGHSARGAA-GGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGSGPAQDRDRR 129
+P L G GAA GGGG G G GG PG G G GP
Sbjct: 122 SPSLALMAGAGGAGAAAGGGGAHDGPGGGGGPGGGGGPGGGPGGG---GGGGPGGGGGGP 178
Query: 130 GLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGY-RPRLLAAAA---AAAAAVTAA 185
G L H P PH S + A + P G P L+AAAA AAAAA AA
Sbjct: 179 GGGLLGGSAH--PHPHMHSLGHLSHPAAAAAMNMPSGLPHPGLVAAAAHHGAAAAAAAAA 236
Query: 186 AG 187
AG
Sbjct: 237 AG 238
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 38.1 bits (87), Expect = 0.006
Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 23/202 (11%)
Query: 10 HRERRRTKLRDPPSSVKTP-KAWGKTRRQPSGKSGRTRTISEM---ESDGVWHE-PRACS 64
HR R ++ ++PPS+ K P KA+ + + +P R R++S + + V H ++
Sbjct: 279 HRSRTKSS-KEPPSAYKEPPKAYREDKTEPKAYR-RRRSLSPLGGRDDSPVSHRASQSLR 336
Query: 65 ELKVP-----GTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEG 119
K P G+ P RL S + + R + + GG V P P+ + +
Sbjct: 337 SRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSR 396
Query: 120 SGPAQDRDRRGLTLGR---RDRHCLPIPHRRLRR--------DPSAASRAGRLGSPLGYR 168
S + R G + R RH RL R PS + L + L
Sbjct: 397 SPYSPVLRRSGKSRSRSPYSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKN 456
Query: 169 PRLLAAAAAAAAAVTAAAGSPK 190
+ AA AA AA AA + K
Sbjct: 457 KKARAAEAARAAEAAKAAEATK 478
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 38.1 bits (87), Expect = 0.006
Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 23/202 (11%)
Query: 10 HRERRRTKLRDPPSSVKTP-KAWGKTRRQPSGKSGRTRTISEM---ESDGVWHE-PRACS 64
HR R ++ ++PPS+ K P KA+ + + +P R R++S + + V H ++
Sbjct: 279 HRSRTKSS-KEPPSAYKEPPKAYREDKTEPKAYR-RRRSLSPLGGRDDSPVSHRASQSLR 336
Query: 65 ELKVP-----GTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEG 119
K P G+ P RL S + + R + + GG V P P+ + +
Sbjct: 337 SRKSPSPAGGGSSPYSRRLPRSPSPYSRRRSPSYSRHSSYERGGDVSPSPYSSSSWRRSR 396
Query: 120 SGPAQDRDRRGLTLGR---RDRHCLPIPHRRLRR--------DPSAASRAGRLGSPLGYR 168
S + R G + R RH RL R PS + L + L
Sbjct: 397 SPYSPVLRRSGKSRSRSPYSSRHSRSRSRHRLSRSRSRHSSISPSTLTLKSSLAAELNKN 456
Query: 169 PRLLAAAAAAAAAVTAAAGSPK 190
+ AA AA AA AA + K
Sbjct: 457 KKARAAEAARAAEAAKAAEATK 478
>gi|157785645 SPEG complex locus [Homo sapiens]
Length = 3267
Score = 37.7 bits (86), Expect = 0.008
Identities = 25/96 (26%), Positives = 35/96 (36%)
Query: 119 GSGPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAA 178
G GP + + G +D +P + S +RA SP P L AA
Sbjct: 2755 GQGPFSNSSEKVFVRGTQDSSAVPSAAHQEAPVTSRPARARPPDSPTSLAPPLAPAAPTP 2814
Query: 179 AAAVTAAAGSPKPLLLCQHLLPLLPPPPPRPHRSHR 214
+ + + P P L + PPP P R HR
Sbjct: 2815 PSVTVSPSSPPTPPSQALSSLKAVGPPPQTPPRRHR 2850
Score = 32.7 bits (73), Expect = 0.26
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 126 RDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAAAV--- 182
R RG G R +P +R + + G+P+ RP L AA A + V
Sbjct: 5 RGTRGEDAGTRAPPSPGVPPKRAKVGAGGGAPVAVAGAPVFLRP-LKNAAVCAGSDVRLR 63
Query: 183 TAAAGSPKPLLLCQHLLPLLPPPPPRPHRSH-RRCG 217
+G+P+P L LLP P P P RRCG
Sbjct: 64 VVVSGTPQPSLRWFRDGQLLPAPAPEPSCLWLRRCG 99
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 37.7 bits (86), Expect = 0.008
Identities = 28/58 (48%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 167 YRPRLLAAAAAAAAAVTAAAGSPKP-------LLLCQHLLPLL-----PPPPPRPHRS 212
Y P+ LAAAAAA AA TAA +P+P L LLP PPPPP PH S
Sbjct: 116 YGPQELAAAAAA-AAATAARNNPEPGGRRPEGGLEADELLPAREKVAEPPPPPPPHFS 172
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 37.0 bits (84), Expect = 0.014
Identities = 58/211 (27%), Positives = 76/211 (36%), Gaps = 33/211 (15%)
Query: 8 VTHRERRRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRT--RTISEMESDGVWHEPRACSE 65
VT ER R+ + + +A + RR+ G + R + G W +P +
Sbjct: 371 VTTHERAHLD-REGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDP---AR 426
Query: 66 LKVPGTPPLLSRLGHSA-RGAAGGGGRDWGRAAPWGVG-GCVLPGPWRTQGFLEEGSGPA 123
+ PG G A R A G + R WG G G V G R G E G A
Sbjct: 427 RRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEA 486
Query: 124 QDRDRRGLTLGRRDRHCLPI-----PHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAA 178
R R LP P R RR+P AA++ LG +G P
Sbjct: 487 --------AAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGP--------- 529
Query: 179 AAAVTAAAGSPKPLLLCQHLLPLLPPPPPRP 209
A +A P+P L P PP PP P
Sbjct: 530 -GAPPSALPGPRP--RPDSLSPGEPPGPPTP 557
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 37.0 bits (84), Expect = 0.014
Identities = 58/211 (27%), Positives = 76/211 (36%), Gaps = 33/211 (15%)
Query: 8 VTHRERRRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRT--RTISEMESDGVWHEPRACSE 65
VT ER R+ + + +A + RR+ G + R + G W +P +
Sbjct: 371 VTTHERAHLD-REGEARARLGQAAAQMRREGWGARAKLGGRGVCGKCGPGPWDDP---AR 426
Query: 66 LKVPGTPPLLSRLGHSA-RGAAGGGGRDWGRAAPWGVG-GCVLPGPWRTQGFLEEGSGPA 123
+ PG G A R A G + R WG G G V G R G E G A
Sbjct: 427 RRNPGAAARAKLAGQRAGRARARTGSQVGSRGRGWGPGAGRVPSGGRRGVGNPERWGGEA 486
Query: 124 QDRDRRGLTLGRRDRHCLPI-----PHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAA 178
R R LP P R RR+P AA++ LG +G P
Sbjct: 487 --------AAPRPSRVLLPELPAVDPARDTRREPDAAAQRTELGGRVGKGP--------- 529
Query: 179 AAAVTAAAGSPKPLLLCQHLLPLLPPPPPRP 209
A +A P+P L P PP PP P
Sbjct: 530 -GAPPSALPGPRP--RPDSLSPGEPPGPPTP 557
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 36.2 bits (82), Expect = 0.023
Identities = 49/175 (28%), Positives = 65/175 (37%), Gaps = 40/175 (22%)
Query: 21 PPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEPRACSELKVPGTPPLLSRLGH 80
PP + P + QP+ + RT + D + C + + P P LL +
Sbjct: 82 PPQHLAAPAH----QPQPAAQLHRT---TNFFIDNILRPDFGCKKEQPP--PQLL--VAA 130
Query: 81 SARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGSGPAQDRDRRG----LTLGRR 136
+ARG AGGGGR R +G G P R L
Sbjct: 131 AARGGAGGGGR-----------------VERDRGQTAAGRDPVHPLGTRAPGAASLLCAP 173
Query: 137 DRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRLLAAAAAAAAAVTAAAGSPKP 191
D +C P + + AS+AG P AAAAAAA A AAA + KP
Sbjct: 174 DANCGPPDGSQPAAAGAGASKAGN--------PAAAAAAAAAAVAAAAAAAAAKP 220
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 35.8 bits (81), Expect = 0.030
Identities = 24/53 (45%), Positives = 25/53 (47%), Gaps = 15/53 (28%)
Query: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPPPPP----------RPHRSHRR 215
AAA AAAAAV G LL HLL PPPPP PH H+R
Sbjct: 261 AAAVAAAAAVAGGGG-----LLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKR 308
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 35.8 bits (81), Expect = 0.030
Identities = 64/234 (27%), Positives = 77/234 (32%), Gaps = 57/234 (24%)
Query: 21 PPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEPRACSELKVPGTPP---LLSR 77
P S P+ QP + R ++G EPR S P P LSR
Sbjct: 194 PKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPAPGPGALSR 253
Query: 78 LGHS------------------ARGAAGGGGRD---WGRAAP--------WGVGGCVLPG 108
S R GGGGR+ GRAAP WG+ GC G
Sbjct: 254 ASRSRAAGRPGPGFHGGEKAAAPRAPGGGGGRNPGALGRAAPPSRARQDAWGLSGCATVG 313
Query: 109 PWRTQGFLEEGSGPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAGR-----LGS 163
R + +G +Q G G R R C RR RR G S
Sbjct: 314 LRRGDC---DRAGSSQPPATSG--NGERCRFC-----RRRRRRGGGGEGEGTHATHGPAS 363
Query: 164 PLGYRPRLLAAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPPPPPRPHRSHRRCG 217
P G R AA A + GS + L L PPP R H + +R G
Sbjct: 364 PPGRRHDEEVGAAVLRAG--SGEGSRRGL--------QLTPPPRRVHGALQRFG 407
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 35.8 bits (81), Expect = 0.030
Identities = 24/53 (45%), Positives = 25/53 (47%), Gaps = 15/53 (28%)
Query: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPPPPP----------RPHRSHRR 215
AAA AAAAAV G LL HLL PPPPP PH H+R
Sbjct: 261 AAAVAAAAAVAGGGG-----LLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKR 308
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 35.8 bits (81), Expect = 0.030
Identities = 24/53 (45%), Positives = 25/53 (47%), Gaps = 15/53 (28%)
Query: 173 AAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPPPPP----------RPHRSHRR 215
AAA AAAAAV G LL HLL PPPPP PH H+R
Sbjct: 261 AAAVAAAAAVAGGGG-----LLGPHLLGAPPPPPPPPPPLAELAGAPHAHHKR 308
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 35.4 bits (80), Expect = 0.039
Identities = 42/133 (31%), Positives = 47/133 (35%), Gaps = 19/133 (14%)
Query: 60 PRACSELKVPGTPPLLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEG 119
PRA S P L++ L +A G GGGG G A G G P
Sbjct: 18 PRAASAQSAPLA--LVTSLAAAASGTGGGGG---GGGASGGTSGSCSPA---------SS 63
Query: 120 SGPAQDRDRRGLTLGRRDR----HCLPIPHRR-LRRDPSAASRAGRLGSPLGYRPRLLAA 174
PA DR R HC +P L G G P + AA
Sbjct: 64 EPPAAPADRLRAESPSPPRLLAAHCALLPKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAA 123
Query: 175 AAAAAAAVTAAAG 187
AAAAAAA AA G
Sbjct: 124 AAAAAAAAAAAGG 136
>gi|61742808 hypothetical protein LOC283638 isoform 2 [Homo sapiens]
Length = 1484
Score = 35.4 bits (80), Expect = 0.039
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 27/121 (22%)
Query: 107 PGPWRTQGFLEEGSGPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAG------- 159
P R+Q F SG + RRG T RDR +P P + R S RAG
Sbjct: 344 PRKKRSQSFTHSPSGDPKADKRRGPTPADRDRPSVPAPVQAGGRS-SGPQRAGSLKREKT 402
Query: 160 --RLGSP-------------LGYRPRLLAAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPP 204
RLGSP +G R RL A ++ A P P + + P+LP
Sbjct: 403 EERLGSPSPASRTPARPFGSVGRRSRLAQDFMAQCLRESSPAARPSP----EKVPPVLPA 458
Query: 205 P 205
P
Sbjct: 459 P 459
>gi|163644261 hypothetical protein LOC283638 isoform 1 [Homo
sapiens]
Length = 1554
Score = 35.4 bits (80), Expect = 0.039
Identities = 37/121 (30%), Positives = 47/121 (38%), Gaps = 27/121 (22%)
Query: 107 PGPWRTQGFLEEGSGPAQDRDRRGLTLGRRDRHCLPIPHRRLRRDPSAASRAG------- 159
P R+Q F SG + RRG T RDR +P P + R S RAG
Sbjct: 414 PRKKRSQSFTHSPSGDPKADKRRGPTPADRDRPSVPAPVQAGGRS-SGPQRAGSLKREKT 472
Query: 160 --RLGSP-------------LGYRPRLLAAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPP 204
RLGSP +G R RL A ++ A P P + + P+LP
Sbjct: 473 EERLGSPSPASRTPARPFGSVGRRSRLAQDFMAQCLRESSPAARPSP----EKVPPVLPA 528
Query: 205 P 205
P
Sbjct: 529 P 529
>gi|239741653 PREDICTED: hypothetical protein XP_002342271 [Homo
sapiens]
Length = 636
Score = 35.0 bits (79), Expect = 0.051
Identities = 32/79 (40%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 144 PHRRLRRDPSAASRAGRLGSPLGYRPR--LLAAAAAAAAAVTAAAGSPKPLLLCQHLLP- 200
P RL P R R L +R R LL AAAAAAAA AAA + L Q P
Sbjct: 302 PSPRLFPRPGFLPRRRR--GVLAHRRRGVLLPAAAAAAAAAAAAAAAAAAFCLTQLFAPP 359
Query: 201 ----LLPPPPPRPHRSHRR 215
PPP P P RR
Sbjct: 360 TAAAFCPPPAPVPRLFARR 378
>gi|6912372 forkhead box D3 [Homo sapiens]
Length = 478
Score = 35.0 bits (79), Expect = 0.051
Identities = 25/58 (43%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 153 SAASRAGRLGSPLGYRPRLLAAA---AAAAAAVTAAAGSPKPLLLCQHLLPLLPPPPP 207
+AA AG G P G P A A AAAAA AAA P L + P+LPP P
Sbjct: 263 AAAGAAGPYGRPYGLHPAAAAGAYSHPAAAAAAAAAAALQYPYAL-PPVAPVLPPAVP 319
>gi|157364934 fibrosin [Homo sapiens]
Length = 460
Score = 35.0 bits (79), Expect = 0.051
Identities = 39/110 (35%), Positives = 48/110 (43%), Gaps = 24/110 (21%)
Query: 117 EEGSGPAQDRDRR------GLTLGRRDRHCLPIPHRRLRRDPSAA-SRAGRLGS-PLGYR 168
E P D++R +T +DR LP +LR P+ +RAG G P
Sbjct: 242 EAARTPGSDKERPVERREPSITKEEKDRD-LPFSRPQLRVSPATPKARAGEEGPRPTKES 300
Query: 169 PRL-----------LAAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPPPPP 207
R+ AAAAAAAAA AAA P+ L HLL P PPP
Sbjct: 301 VRVKEERKEEAAAAAAAAAAAAAAAAAAATGPQGL----HLLFERPRPPP 346
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 34.3 bits (77), Expect = 0.088
Identities = 30/82 (36%), Positives = 35/82 (42%), Gaps = 23/82 (28%)
Query: 149 RRDPSAASRAGRLGSPLGYRPRLLAAAAAA-------------AAAVTAAAGSPKPLLLC 195
R +P A R+G + + AAAAAA AAA AAA P P L
Sbjct: 299 RAEPPFAPRSGD-----AHYGAVAAAAAAALHGYGAVNLNLNLAAAAAAAAAGPGPHLQ- 352
Query: 196 QHLLPLLPPPPP----RPHRSH 213
H P PPPPP PH+ H
Sbjct: 353 HHAPPPAPPPPPAPAQHPHQHH 374
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 33.5 bits (75), Expect = 0.15
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 33/81 (40%)
Query: 163 SPLGYRPRLLAAAAAAAAAVTAAA--GSPKPLLLCQHLL--------------------- 199
SP+ Y +AAAAAAAAA AAA GSP + + L
Sbjct: 211 SPMPYASCQMAAAAAAAAAAAAAAGPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPPGV 270
Query: 200 ----------PLLPPPPPRPH 210
P PPPPP PH
Sbjct: 271 VNSYNGLGGPPAAPPPPPHPH 291
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 33.5 bits (75), Expect = 0.15
Identities = 46/177 (25%), Positives = 59/177 (33%), Gaps = 41/177 (23%)
Query: 14 RRTKLRDPPSSVKTPKAWGKTRRQPSGKSGRTRTISEMESDGVWHEPRACSELKVPGTPP 73
RR K+ PP + K K + + G G +S ES+G +PR GT
Sbjct: 176 RRLKVAPPPPAPKPCKTVTTSGAKAGGGKGAGSRLSWPESEG---KPRVKGSKSSAGTGA 232
Query: 74 LLSRLGHSARGAAGGGGRDWGRAAPWGVGGCVLPGPWRTQGFLEEGSGPAQDRDRRGLTL 133
+S +A AAGGGG + G G G R + TL
Sbjct: 233 SVSAAATAA--AAGGGGSTASTSGGVGAGA--------------GARGKLSPRKGKSKTL 276
Query: 134 GRRDRHCLPIPHRRLRRDPSAASRAGRLGSPLGYRPRL-LAAAAAAAAAVTAAAGSP 189
D H G P G P L L + A AVTAA+ P
Sbjct: 277 DNSDLH---------------------PGPPAGSPPPLTLPPTPSPATAVTAASAQP 312
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 33.5 bits (75), Expect = 0.15
Identities = 23/59 (38%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 151 DPSAASRAGRLGSPLGYRPRLLAAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPPPPPRP 209
DPSAAS SPL P + AA A AAV A P LC P P P
Sbjct: 170 DPSAASLCA--ASPLAAVPAAASPAAVAPAAVCPGAAGPSAASLCAASQPAAVPAAASP 226
Score = 32.0 bits (71), Expect = 0.44
Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 152 PSAASRAGRLGSPLGYRPRLLAAAAAA--AAAVTAAAGSP-KPLLLCQHLLPLLPPPPPR 208
P+AAS A +PL P A AAAA AA V + A SP PL + Q P+ PP P
Sbjct: 221 PAAASPAA--AAPLAVNPAAAARAAAAPAAACVQSVAESPATPLAIAQ---PVSFPPAPV 275
Query: 209 P 209
P
Sbjct: 276 P 276
Score = 29.3 bits (64), Expect = 2.8
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 152 PSAASRAGR---LGSPLGYRPRLLAAAAAAAAAVTAAAGSPKPLLLCQHLLPLLPP 204
PSA +RA +P RP AAA AAV AA P LC P P
Sbjct: 87 PSALTRAVAWRPAAAPAAVRPPAAGPPAAAPAAVCPAAADPSAASLCAASPPAAVP 142
Score = 28.1 bits (61), Expect = 6.3
Identities = 21/52 (40%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 151 DPSAAS-------RAGRLGSPLGYRPRLLAAAAAAAAAVTAAAGSPKPLLLC 195
DPSAAS A P RP AAA AAV AA P LC
Sbjct: 126 DPSAASLCAASPPAAVPAAVPAAVRPPAAGPPAAALAAVYPAAADPSAASLC 177
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,397,052
Number of Sequences: 37866
Number of extensions: 737642
Number of successful extensions: 7317
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 6432
Number of HSP's gapped (non-prelim): 900
length of query: 223
length of database: 18,247,518
effective HSP length: 98
effective length of query: 125
effective length of database: 14,536,650
effective search space: 1817081250
effective search space used: 1817081250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.