Guide to the Human Genome
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Name: LOC729154 Sequence: fasta or formatted (223aa) NCBI GI: 169208604
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {223aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         24           9
 C cysteine            2.7          6           1
 D aspartate           4.0          9           1
 E glutamate           3.1          7           2
 F phenylalanine       0.4          1           1
 G glycine            12.1         27           4
 H histidine           3.6          8           1
 I isoleucine          0.9          2           1
 K lysine              3.1          7           1
 L leucine             9.9         22           3
 M methionine          1.3          3           1
 N asparagine          0.0          0           0
 P proline            11.7         26           5
 Q glutamine           1.8          4           1
 R arginine           15.7         35           3
 S serine              7.2         16           2
 T threonine           4.9         11           1
 V valine              3.1          7           1
 W tryptophan          2.7          6           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729154             1.000   PREDICTED: hypothetical protein 
LOC100292168          0.031   PREDICTED: similar to hCG2030094 
LOC100288743          0.031   PREDICTED: similar to hCG2030094 
LOC100288743          0.031   PREDICTED: hypothetical protein XP_002342716 
POU3F3                0.031   POU class 3 homeobox 3 
C10orf140             0.031   hypothetical protein LOC387640 
NKX6-1                0.031   NK6 transcription factor related, locus 1 
POU4F1                0.031   POU domain, class 4, transcription factor 1 
CDC2L5                0.029   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.029   cell division cycle 2-like 5 isoform 2 
SPEG                  0.029   SPEG complex locus 
GBX1                  0.029   gastrulation brain homeo box 1 
LOC100290946          0.027   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.027   PREDICTED: hypothetical protein XP_002344246 
EN1                   0.024   engrailed homeobox 1 
FUSSEL18              0.024   PREDICTED: functional smad suppressing element 18 [...
LOC100127891          0.024   PREDICTED: hypothetical protein 
FUSSEL18              0.024   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.024   PREDICTED: functional smad suppressing element 18 [...
MNX1                  0.022   homeo box HB9 
KIAA0284              0.022   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.022   hypothetical protein LOC283638 isoform 1 
LOC100287723          0.022   PREDICTED: hypothetical protein XP_002342271 
FOXD3                 0.022   forkhead box D3 
FBRS                  0.022   fibrosin 
ZIC5                  0.020   zinc finger protein of the cerebellum 5 
FOXL2                 0.018   forkhead box L2 
AGAP2                 0.018   centaurin, gamma 1 isoform PIKE-L 
KRTAP4-6              0.018   PREDICTED: keratin associated protein 4.6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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