Guide to the Human Genome
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Name: LOC100288743 Sequence: fasta or formatted (254aa) NCBI GI: 239743005
Description:

PREDICTED: hypothetical protein XP_002342716

Not currently referenced in the text

Other entries for this name:
alt mRNA {254aa} PREDICTED: similar to hCG2030094
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.3         44           4
 C cysteine            1.2          3           1
 D aspartate           2.4          6           2
 E glutamate           5.1         13           2
 F phenylalanine       0.4          1           1
 G glycine            10.2         26           2
 H histidine           3.9         10           2
 I isoleucine          0.8          2           1
 K lysine              0.8          2           1
 L leucine            13.0         33           3
 M methionine          1.2          3           1
 N asparagine          1.6          4           1
 P proline             5.9         15           2
 Q glutamine           8.3         21           2
 R arginine           15.4         39           3
 S serine              3.9         10           2
 T threonine           2.8          7           1
 V valine              4.7         12           1
 W tryptophan          0.8          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342716 
LOC100288743          1.000   PREDICTED: similar to hCG2030094 
LOC100292168          0.969   PREDICTED: similar to hCG2030094 
LOC100289993          0.046   PREDICTED: hypothetical protein XP_002348146 
LOC100288915          0.046   PREDICTED: hypothetical protein XP_002343820 
LOC728767             0.034   PREDICTED: hypothetical protein 
LOC728767             0.034   PREDICTED: hypothetical protein 
LOC729154             0.029   PREDICTED: hypothetical protein 
LOC729154             0.029   PREDICTED: hypothetical protein 
APC2                  0.025   adenomatosis polyposis coli 2 
LOC100290372          0.025   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.025   PREDICTED: hypothetical protein XP_002342652 
LOC100132983          0.025   PREDICTED: hypothetical protein 
CNGB1                 0.023   cyclic nucleotide gated channel beta 1 isoform a [H...
HOXD11                0.023   homeobox D11 
LOC100288686          0.021   PREDICTED: hypothetical protein XP_002342615 
LOC100292157          0.021   PREDICTED: hypothetical protein 
LOC100290926          0.021   PREDICTED: hypothetical protein XP_002347568 
LOC100288995          0.021   PREDICTED: hypothetical protein XP_002343379 
LOC100292292          0.017   PREDICTED: hypothetical protein 
LOC100127944          0.017   PREDICTED: hypothetical protein 
LOC100289978          0.017   PREDICTED: hypothetical protein XP_002348035 
LOC100291384          0.017   PREDICTED: hypothetical protein XP_002347156 
LOC100127944          0.017   PREDICTED: hypothetical protein 
LOC100287578          0.017   PREDICTED: hypothetical protein XP_002343004 
LOC100127944          0.017   PREDICTED: hypothetical protein 
EGLN1                 0.017   egl nine homolog 1 
LOC100289716          0.017   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.017   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.017   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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