Guide to the Human Genome
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Name: LOC390424 Sequence: fasta or formatted (125aa) NCBI GI: 169206305
Description:

PREDICTED: similar to hCG1639781

Referenced in:

Oxidative Phosphorylation

Other entries for this name:
alt mRNA [125aa] PREDICTED: hypothetical protein LOC390424
alt mRNA [125aa] PREDICTED: similar to hCG1639781
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         15           2
 C cysteine            2.4          3           2
 D aspartate           2.4          3           1
 E glutamate           1.6          2           1
 F phenylalanine       4.8          6           1
 G glycine            10.4         13           1
 H histidine           0.0          0           0
 I isoleucine          7.2          9           2
 K lysine              3.2          4           1
 L leucine            11.2         14           2
 M methionine          1.6          2           1
 N asparagine          3.2          4           1
 P proline             4.0          5           1
 Q glutamine           4.0          5           2
 R arginine            4.8          6           2
 S serine             12.8         16           3
 T threonine           5.6          7           2
 V valine              4.8          6           1
 W tryptophan          1.6          2           1
 Y tyrosine            2.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1639781 
LOC390424             1.000   PREDICTED: similar to hCG1639781 
LOC390424             1.000   PREDICTED: hypothetical protein LOC390424 
ATP5G1                0.797   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5G1                0.797   ATP synthase, H+ transporting, mitochondrial F0 compl...
ATP5G3                0.491   ATP synthase, H+ transporting, mitochondrial F0 compl...
ATP5G3                0.491   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5G2                0.477   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5G2                0.477   ATP synthase, H+ transporting, mitochondrial F0 comp...
MFSD9                 0.023   major facilitator superfamily domain containing 9 [...
CACNG8                0.023   voltage-dependent calcium channel gamma-8 subunit [H...
SLC12A2               0.014   solute carrier family 12 (sodium/potassium/chloride t...
PZP                   0.014   pregnancy-zone protein 
LOC100131244          0.014   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.014   PREDICTED: similar to kinase D-interacting substrat...
LOC100131244          0.014   PREDICTED: similar to kinase D-interacting substrat...
CACNG4                0.014   voltage-dependent calcium channel gamma-4 subunit [Ho...
LOC100293165          0.009   PREDICTED: similar to hCG2006901 
FBXO45                0.009   F-box protein 45 
PGK2                  0.009   phosphoglycerate kinase 2 
B4GALT1               0.009   UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1...
FZD8                  0.009   frizzled 8 
CAPNS1                0.009   calpain, small subunit 1 
CAPNS1                0.009   calpain, small subunit 1 
MAP7                  0.009   microtubule-associated protein 7 
FRMD8                 0.009   FERM domain containing 8 
FLJ32810              0.005   Rho-type GTPase-activating protein FLJ32810 
XIRP1                 0.005   xin actin-binding repeat containing 1 
GSX2                  0.005   GS homeobox 2 
CNKSR3                0.005   CNKSR family member 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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