Guide to the Human Genome
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Name: LOC100293165 Sequence: fasta or formatted (262aa) NCBI GI: 239756239
Description:

PREDICTED: similar to hCG2006901

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         29           2
 C cysteine            3.4          9           1
 D aspartate           2.7          7           1
 E glutamate           5.0         13           1
 F phenylalanine       3.4          9           1
 G glycine             6.1         16           1
 H histidine           2.3          6           1
 I isoleucine          1.9          5           2
 K lysine              2.7          7           1
 L leucine            13.4         35           4
 M methionine          2.7          7           1
 N asparagine          1.5          4           1
 P proline             6.5         17           2
 Q glutamine           7.3         19           1
 R arginine            5.7         15           2
 S serine              9.9         26           2
 T threonine           5.0         13           2
 V valine              6.9         18           2
 W tryptophan          1.5          4           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2006901 
LOC100294446          0.190   PREDICTED: similar to hCG2006901 
HERC2                 0.178   hect domain and RLD 2 
LOC100289574          0.132   PREDICTED: hypothetical protein XP_002343479 
EXOC6B                0.016   SEC15-like 2 
OBSCN                 0.006   obscurin, cytoskeletal calmodulin and titin-interac...
LOC100130503          0.006   PREDICTED: hypothetical protein 
LOC100291061          0.006   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.006   PREDICTED: hypothetical protein XP_002343855 
PRG2                  0.006   plasticity-related protein 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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