Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169205149
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
(430 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169204521 PREDICTED: hypothetical protein [Homo sapiens] 868 0.0
gi|169205149 PREDICTED: hypothetical protein [Homo sapiens] 868 0.0
gi|169204400 PREDICTED: hypothetical protein [Homo sapiens] 868 0.0
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 52 1e-06
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 48 1e-05
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 48 1e-05
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 47 3e-05
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 47 4e-05
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 47 4e-05
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 47 4e-05
gi|239757439 PREDICTED: hypothetical protein [Homo sapiens] 46 6e-05
gi|239751956 PREDICTED: hypothetical protein [Homo sapiens] 46 6e-05
gi|239746439 PREDICTED: hypothetical protein XP_002344222 [Homo ... 46 6e-05
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 45 1e-04
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 44 2e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 44 3e-04
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 43 5e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 43 6e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 43 6e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 43 6e-04
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 43 6e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 43 6e-04
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 42 8e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 42 0.001
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 42 0.001
gi|50962882 G patch domain containing 8 [Homo sapiens] 42 0.001
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ... 42 0.001
gi|239750438 PREDICTED: hypothetical protein [Homo sapiens] 42 0.001
gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo ... 42 0.001
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 0.001
>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 868 bits (2242), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT
Sbjct: 1 MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
Query: 61 GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML
Sbjct: 61 GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
Query: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA
Sbjct: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
Query: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER
Sbjct: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
Query: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE
Sbjct: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
Query: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA
Sbjct: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
Query: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD
Sbjct: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
Query: 421 ILALKKGLPY 430
ILALKKGLPY
Sbjct: 421 ILALKKGLPY 430
>gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 868 bits (2242), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT
Sbjct: 1 MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
Query: 61 GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML
Sbjct: 61 GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
Query: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA
Sbjct: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
Query: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER
Sbjct: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
Query: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE
Sbjct: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
Query: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA
Sbjct: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
Query: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD
Sbjct: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
Query: 421 ILALKKGLPY 430
ILALKKGLPY
Sbjct: 421 ILALKKGLPY 430
>gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 430
Score = 868 bits (2242), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT
Sbjct: 1 MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
Query: 61 GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML
Sbjct: 61 GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
Query: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA
Sbjct: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
Query: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER
Sbjct: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
Query: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE
Sbjct: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
Query: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA
Sbjct: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
Query: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD
Sbjct: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
Query: 421 ILALKKGLPY 430
ILALKKGLPY
Sbjct: 421 ILALKKGLPY 430
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 51.6 bits (122), Expect = 1e-06
Identities = 78/302 (25%), Positives = 113/302 (37%), Gaps = 53/302 (17%)
Query: 109 GGALCGTAAGMLGWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWR 168
G C AAG G G G + + V L ++ +AAP LS +
Sbjct: 5 GHRQCNQAAGRAGPGAPLGAALARTPVELAAE---------------SAAPALSAAAAGV 49
Query: 169 RRLYSSVLPVTASAAAAPSFSPTEESELEPFLG----------AGAGGERNREPGVLLCF 218
+ L S + AAA + G AGAGG NR G
Sbjct: 50 KILGSGDKKLRRQKAAAGGKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAA 109
Query: 219 SAAPPDMVGSLERGERARIRERKGRE-GPSRPRRGLQGTAAGRVRADPDDASLSTDKPQR 277
+A + G RG + R R +K G +PR Q +AA + R
Sbjct: 110 AAGTKSLGG---RGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSK-------------NR 153
Query: 278 GTGGPLGPAAAGAGTEAAAAHEEGSKAGD---SGAEPRGLAPHGPHPSCGERRPGGRWQQ 334
G G AAAG ++ ++ + AG SG +PR S G+ GR Q+
Sbjct: 154 GAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAK----SRGDEDKKGR-QR 208
Query: 335 RRRSHEGRARG-RHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQR 393
+S G+ RG R + AA A +RR G +P+ +R R G ++ + G+
Sbjct: 209 EAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRR--GQKAATGGKSRVGKS 266
Query: 394 RG 395
RG
Sbjct: 267 RG 268
Score = 45.1 bits (105), Expect = 1e-04
Identities = 84/346 (24%), Positives = 125/346 (36%), Gaps = 50/346 (14%)
Query: 79 ACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGMLGWGRERGRPGSSSAVALE 138
A GA + G + A A SR GG L + L ++ A A
Sbjct: 461 AAEAGAESRGDKKQGRQKASAAGTKSR---GGGLKSHSGKNLWRRGQKAEAAGEKATAAG 517
Query: 139 SQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTASAAAAPSFSPTEESELEP 198
++ R++ R V A R+ S +R+ A AA A S +
Sbjct: 518 AKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQ--------KAVAAGATSHGGGGNKQ--- 566
Query: 199 FLGAGAGGERNREPG--VLLCFSAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGT 256
G GG + R+ G + D ++ + R G G R+ GT
Sbjct: 567 --SRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAGT 624
Query: 257 AA---------GRVRADPDDASLSTDKPQRGTGGPLG----PAAAGAGTEAAAAHEEGSK 303
A G+ A + + +T RG+GG PAAAG+ + AAAA + ++
Sbjct: 625 GAKSRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAAGSESSAAAAVGQEAE 684
Query: 304 A------------GDSGAEPR-GLAP---HGPHPSCGERRPGGRWQQRRRSHEGRARGRH 347
A GD G G+ P G P G+ R GG + R G A+ R
Sbjct: 685 ARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGGGGAKSR---GSGGAKSRG 741
Query: 348 RVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQR 393
A + AA++ G + RR +RS +AV A GQ+
Sbjct: 742 SGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQK 787
Score = 38.5 bits (88), Expect = 0.012
Identities = 56/213 (26%), Positives = 81/213 (38%), Gaps = 29/213 (13%)
Query: 203 GAGGERNREPGVLLCFSAAPPDMVGSLERGERARI----RERKGREGPSRPRRGLQGTAA 258
G GG++ R G +AA G + + A + R+++ R G +PRR A
Sbjct: 319 GRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRG-KKPRRQKASAAG 377
Query: 259 GRVRADPDDASLSTDKPQRGTGGPL----GPAAAGAGTEAAAAHEEGSKAGDSGAEPRGL 314
+ R D L K +RG G P AA GSK +PR
Sbjct: 378 AKSRGGGDKKGLREAK-RRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSK------KPRRR 430
Query: 315 APHGPHPSCGERRPGGRWQQRRRSHEGR---------ARGRHRVEADAADAAPTAAARRA 365
P G+ R GG + RRR + R +RG + A AA T +R
Sbjct: 431 GPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGT-KSRGG 489
Query: 366 GRARPRGRRHREHGTRSDA---RAVAAPGQRRG 395
G G+ G +++A +A AA + RG
Sbjct: 490 GLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRG 522
Score = 35.0 bits (79), Expect = 0.13
Identities = 73/334 (21%), Positives = 111/334 (33%), Gaps = 60/334 (17%)
Query: 84 AAAAGGCWATWEVAVAVTVSSR-WGSGGALCGTAAGMLGWGRERGRPGSSSAVALESQMT 142
AAA G W + S+ G+G AAG+ G E+ P ++A +S+
Sbjct: 130 AAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEK--PQKAAAAGAKSRSG 187
Query: 143 LRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTASAAAAPSFSPTEESELEPFLGA 202
+ ++R A R R+R S T P
Sbjct: 188 KKPRRR-------GAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKP---------- 230
Query: 203 GAGGERNREPGVLLCFSAAPPDMVGSLERGERA----RIRERKGREGPSRPRRGLQGTAA 258
AGG ++R G P RG++A + R K R G + R QG A
Sbjct: 231 AAGGAKSRRGG------GKKPQK--QRRRGQKAATGGKSRVGKSRGGGDKKLRR-QGQNA 281
Query: 259 GRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHG 318
A A+ + +KP G GP + G + + G G +PR
Sbjct: 282 ALAGAKRRGAATAGEKPAAKGRGGRGPKSLGG---------QNPRWGRGGKKPRRRGQKA 332
Query: 319 PHPSCGERRPGGRWQQR--------RRSHEGRARGRHRVEADAADAAP----------TA 360
+ + GG QQ+ R+ R + R +A AA A A
Sbjct: 333 TKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREA 392
Query: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRR 394
R GR +PR + R ++ A G ++
Sbjct: 393 KRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKK 426
Score = 30.8 bits (68), Expect = 2.5
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 25/195 (12%)
Query: 205 GGERNREPGVLLCFSAAPPDMVGSLERGERARIRER-------------KGREGPSRPRR 251
GG++ R G AA G+ RG++ + R++ K G + RR
Sbjct: 446 GGKKPRRRGQKARQKAAE---AGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRR 502
Query: 252 GLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAA-HEEGSKAGDSGAE 310
G + AAG S +P+R PA AGA + + + KA +GA
Sbjct: 503 GQKAEAAGEKATAAGAKSRGRKQPRRQK-----PAVAGAKSRVGGSKSRQRQKAVAAGAT 557
Query: 311 PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARP 370
G + G +P +W Q + + R G + A A T + R+G
Sbjct: 558 SHGGGGNKQSRGGGGNKP-RQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKS--RSGDGGK 614
Query: 371 RGRRHREHGTRSDAR 385
+ R + GT + +R
Sbjct: 615 KAWRQKAAGTGAKSR 629
Score = 29.6 bits (65), Expect = 5.5
Identities = 53/203 (26%), Positives = 70/203 (34%), Gaps = 42/203 (20%)
Query: 99 AVTVSSRWGSGGALCGTAAGMLGWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAA 158
A W +G G+ W + SSA A Q RKK
Sbjct: 640 AAAAEKAWATGATSRGSGGKQPRWQKPAAAGSESSAAAAVGQEAEARKK----------- 688
Query: 159 PRLSLSIVWRRRLYSSVLPVTASAAAAPSFSPTEESELEPFLG--AGAGGERNREPGVLL 216
PR RRR S AA +P + +P LG G GG ++R G
Sbjct: 689 PR-------RRRAKSR---GDGGQNAAVGINPWQRRGKKPRLGKSRGGGGAKSRGSG--- 735
Query: 217 CFSAAPPDMVGSLER-GERARIRERKG-------REGPSRPRRGLQGTAAGRVRADPDDA 268
A G+ R G++A + G R G ++ R G + AG +A A
Sbjct: 736 --GAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQKA----A 789
Query: 269 SLSTDKPQR--GTGGPLGPAAAG 289
+ KP R GG AAAG
Sbjct: 790 AAGGKKPPRVKSRGGRGQKAAAG 812
>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
Length = 1512
Score = 48.1 bits (113), Expect = 1e-05
Identities = 54/215 (25%), Positives = 76/215 (35%), Gaps = 27/215 (12%)
Query: 217 CFSAAPPDMVGSLERGERARIRERKGREGPS--------------RPRRGLQGTAAGRVR 262
CFS PP V L RG+R +K R GP +P++ G A+
Sbjct: 80 CFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGG 139
Query: 263 ADP----DDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHG 318
P +D S +++ G AA AG + GS A SG + RG
Sbjct: 140 VTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGSG---GSPASSSGTQRRGEGSER 196
Query: 319 PHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREH 378
P R GR ++R R H R R EA + + + + G
Sbjct: 197 -RPRRDRRSSSGRSKERHREHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSG 255
Query: 379 GTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHS 413
G R A A ++ R D + S H+ R S
Sbjct: 256 GRRKSASATSSSSSSRKDRD-----SKAHRSRTKS 285
>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
Length = 1452
Score = 48.1 bits (113), Expect = 1e-05
Identities = 54/215 (25%), Positives = 76/215 (35%), Gaps = 27/215 (12%)
Query: 217 CFSAAPPDMVGSLERGERARIRERKGREGPS--------------RPRRGLQGTAAGRVR 262
CFS PP V L RG+R +K R GP +P++ G A+
Sbjct: 80 CFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGG 139
Query: 263 ADP----DDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHG 318
P +D S +++ G AA AG + GS A SG + RG
Sbjct: 140 VTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGSG---GSPASSSGTQRRGEGSER 196
Query: 319 PHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREH 378
P R GR ++R R H R R EA + + + + G
Sbjct: 197 -RPRRDRRSSSGRSKERHREHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSG 255
Query: 379 GTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHS 413
G R A A ++ R D + S H+ R S
Sbjct: 256 GRRKSASATSSSSSSRKDRD-----SKAHRSRTKS 285
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 47.0 bits (110), Expect = 3e-05
Identities = 69/281 (24%), Positives = 100/281 (35%), Gaps = 45/281 (16%)
Query: 128 RPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTASAAAAPS 187
R GS S+ + + Q R++ AAAP R ++ PV S+
Sbjct: 50 RRGSGSSPSADQQGAQDREEEA------AAAPAADQQRAQDREEEAAAAPVPTSSGHRTE 103
Query: 188 FSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGPS 247
+ + +P AG G+R S+ D +RA+ RE + P
Sbjct: 104 KRKRLQLQCQP---AGGTGQRRGSR------SSPSADQ-------QRAQDREEEAAAAPV 147
Query: 248 RPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDS 307
RG + R R P +P GTG G ++ + + A E A
Sbjct: 148 PTSRGHR--TEKRKRQQPQR------RPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAP 199
Query: 308 GAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEG----RARGRHRVEADAADAAPTAAAR 363
RG P + RP G QRR S + R + R E AA APT+
Sbjct: 200 APTSRGHRTEKRKPQQPQCRPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPAPTSRGH 259
Query: 364 RAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSS 404
R + +P+ + R G GQRRG Y PS+
Sbjct: 260 RTEKRKPQQPQRRPAG---------GTGQRRG--SGYSPSA 289
Score = 37.0 bits (84), Expect = 0.035
Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 13/148 (8%)
Query: 274 KPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQ 333
+P GTG G ++ + + A E A RG P +RRP G
Sbjct: 219 RPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTG 278
Query: 334 QRRRS----HEGRARGRHRVEADAADAAPTAAARRAGR-------ARPRG--RRHREHGT 380
QRR S + + R E AA APT++ R + +P G + R G
Sbjct: 279 QRRGSGYSPSADQQGAQDREEEAAAAPAPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSGC 338
Query: 381 RSDARAVAAPGQRRGDTEDYLPSSSPHQ 408
S A A + +P+SS H+
Sbjct: 339 SSSANQQGAQDREEEAAAAPVPTSSGHR 366
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 46.6 bits (109), Expect = 4e-05
Identities = 57/187 (30%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 232 GERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAG 291
G AR R R+G RP G T A + P GT G A G+
Sbjct: 180 GRSARARTRRGPHRTRRPEPGPHHTGARQA------------GPLPGTRGRTRAAGTGSA 227
Query: 292 TEAAAAH-EEGSKAGDSGAEPRGLAPHGP----HPSCGERRPGGRWQQRRRSHEGRARGR 346
A H GS A + A GL+P G P RP R+ R + AR R
Sbjct: 228 ARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287
Query: 347 HRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYL----- 401
RV + + + A+RA R P R R G R ARA PG G L
Sbjct: 288 CRVNWNQSSRPASHNAQRAARHIP--SRPRASGLR--ARAARRPGLDPGPAPYPLTPAAL 343
Query: 402 -PSSSPH 407
P +SPH
Sbjct: 344 RPGTSPH 350
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 46.6 bits (109), Expect = 4e-05
Identities = 57/187 (30%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 232 GERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAG 291
G AR R R+G RP G T A + P GT G A G+
Sbjct: 180 GRSARARTRRGPHRTRRPEPGPHHTGARQA------------GPLPGTRGRTRAAGTGSA 227
Query: 292 TEAAAAH-EEGSKAGDSGAEPRGLAPHGP----HPSCGERRPGGRWQQRRRSHEGRARGR 346
A H GS A + A GL+P G P RP R+ R + AR R
Sbjct: 228 ARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287
Query: 347 HRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYL----- 401
RV + + + A+RA R P R R G R ARA PG G L
Sbjct: 288 CRVNWNQSSRPASHNAQRAARHIP--SRPRASGLR--ARAARRPGLDPGPAPYPLTPAAL 343
Query: 402 -PSSSPH 407
P +SPH
Sbjct: 344 RPGTSPH 350
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 46.6 bits (109), Expect = 4e-05
Identities = 57/187 (30%), Positives = 69/187 (36%), Gaps = 27/187 (14%)
Query: 232 GERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAG 291
G AR R R+G RP G T A + P GT G A G+
Sbjct: 180 GRSARARTRRGPHRTRRPEPGPHHTGARQA------------GPLPGTRGRTRAAGTGSA 227
Query: 292 TEAAAAH-EEGSKAGDSGAEPRGLAPHGP----HPSCGERRPGGRWQQRRRSHEGRARGR 346
A H GS A + A GL+P G P RP R+ R + AR R
Sbjct: 228 ARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287
Query: 347 HRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYL----- 401
RV + + + A+RA R P R R G R ARA PG G L
Sbjct: 288 CRVNWNQSSRPASHNAQRAARHIP--SRPRASGLR--ARAARRPGLDPGPAPYPLTPAAL 343
Query: 402 -PSSSPH 407
P +SPH
Sbjct: 344 RPGTSPH 350
>gi|239757439 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 46.2 bits (108), Expect = 6e-05
Identities = 60/208 (28%), Positives = 75/208 (36%), Gaps = 39/208 (18%)
Query: 209 NREPGVLLCFSAAPPDMVGSLE-RGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDD 267
N PG LL F P G E R R R R GRE P++P R RA D
Sbjct: 46 NIHPG-LLSFHLQPETREGKREGRSRRLRSRRGAGREEPAKP------PPRNRPRAAVDA 98
Query: 268 ASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPH---------- 317
A+L+ P G AA A E+ + + S PH
Sbjct: 99 ATLTPPAPSAVRSGR--SLAACARVESWHFLPQSWRTAPSAGIAASCLPHPGQPFIEPPL 156
Query: 318 --GPHPS----CGER------RPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA 365
GPHP+ G+ R GG W +RR S RG + A PT RR+
Sbjct: 157 PIGPHPATLPVAGQSGRGWPSRGGGHWAERRVSTSANGRGE-----ELRGAPPTLGPRRS 211
Query: 366 GRARPRGRRHREHGTRSDARAVAAPGQR 393
++ R R G + R A PG R
Sbjct: 212 QQSLTRIRLCL--GGKQKVRVPATPGLR 237
>gi|239751956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 243
Score = 46.2 bits (108), Expect = 6e-05
Identities = 60/208 (28%), Positives = 75/208 (36%), Gaps = 39/208 (18%)
Query: 209 NREPGVLLCFSAAPPDMVGSLE-RGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDD 267
N PG LL F P G E R R R R GRE P++P R RA D
Sbjct: 46 NIHPG-LLSFHLQPETREGKREGRSRRLRSRRGAGREEPAKP------PPRNRPRAAVDA 98
Query: 268 ASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPH---------- 317
A+L+ P G AA A E+ + + S PH
Sbjct: 99 ATLTPPAPSAVRSGR--SLAACARVESWHFLPQSWRTAPSAGIAASCLPHPGQPFIEPPL 156
Query: 318 --GPHPS----CGER------RPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA 365
GPHP+ G+ R GG W +RR S RG + A PT RR+
Sbjct: 157 PIGPHPATLPVAGQSGRGWPSRGGGHWAERRVSTSANGRGE-----ELRGAPPTLGPRRS 211
Query: 366 GRARPRGRRHREHGTRSDARAVAAPGQR 393
++ R R G + R A PG R
Sbjct: 212 QQSLTRIRLCL--GGKQKVRVPATPGLR 237
>gi|239746439 PREDICTED: hypothetical protein XP_002344222 [Homo
sapiens]
Length = 243
Score = 46.2 bits (108), Expect = 6e-05
Identities = 60/208 (28%), Positives = 75/208 (36%), Gaps = 39/208 (18%)
Query: 209 NREPGVLLCFSAAPPDMVGSLE-RGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDD 267
N PG LL F P G E R R R R GRE P++P R RA D
Sbjct: 46 NIHPG-LLSFHLQPETREGKREGRSRRLRSRRGAGREEPAKP------PPRNRPRAAVDA 98
Query: 268 ASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPH---------- 317
A+L+ P G AA A E+ + + S PH
Sbjct: 99 ATLTPPAPSAVRSGR--SLAACARVESWHFLPQSWRTAPSAGIAASCLPHPGQPFIEPPL 156
Query: 318 --GPHPS----CGER------RPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA 365
GPHP+ G+ R GG W +RR S RG + A PT RR+
Sbjct: 157 PIGPHPATLPVAGQSGRGWPSRGGGHWAERRVSTSANGRGE-----ELRGAPPTLGPRRS 211
Query: 366 GRARPRGRRHREHGTRSDARAVAAPGQR 393
++ R R G + R A PG R
Sbjct: 212 QQSLTRIRLCL--GGKQKVRVPATPGLR 237
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 45.4 bits (106), Expect = 1e-04
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 14/128 (10%)
Query: 268 ASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERR 327
+ ++T KP P P G A+A S + S A + S RR
Sbjct: 349 SGVTTGKPP----APPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRR 404
Query: 328 PGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAV 387
GG ++ GRH + + + +RR R+R RGRRH G+R R
Sbjct: 405 GGGYYRS----------GRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYS 454
Query: 388 AAPGQRRG 395
+P +R G
Sbjct: 455 RSPARRGG 462
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 13/126 (10%)
Query: 274 KPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQ 333
+P GTG G ++ + + A E A RG P +RRP G
Sbjct: 42 QPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTG 101
Query: 334 QRRRSHEGRAR----GRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAA 389
QRR S + + R E AA APT++ R + +P+ + R A
Sbjct: 102 QRRGSRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQ---------QPQCRPAAG 152
Query: 390 PGQRRG 395
GQRRG
Sbjct: 153 TGQRRG 158
Score = 40.0 bits (92), Expect = 0.004
Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 33/240 (13%)
Query: 180 ASAAAAPSFSP--TEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERA-- 235
A+AA AP+ TE+ + + AGG R S++ D G+ +R E A
Sbjct: 71 AAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSR----SSSSADQQGAQDREEEAAA 126
Query: 236 ---------RIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPA 286
R +RK ++ RP G G G + D + D+ + T P+ P
Sbjct: 127 APAPTSSGHRTEKRKPQQPQCRPAAGT-GQRRGSGCSPSADQQRAQDREEEATAAPV-PT 184
Query: 287 AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGR 346
++G TE + + + RG S R+P G QRR S + +
Sbjct: 185 SSGHRTEKRKRLQLQCQPAGGTGQRRGSR------SSPSRQPAGGTGQRRGSRSSPSADQ 238
Query: 347 HRVEADAADAAPTAAARRAGRARPRGRRHREHGT-RSDARAVAAPGQRRGDTEDYLPSSS 405
R + +AA + RP G + GT + GQRRG P+S+
Sbjct: 239 QRAQDREEEAAQP-------QRRPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAPAPTST 291
Score = 34.3 bits (77), Expect = 0.22
Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 15/158 (9%)
Query: 274 KPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQ 333
+P GTG G ++ + + A E A G P + RP
Sbjct: 95 RPAGGTGQRRGSRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAAGTG 154
Query: 334 QRRRS----HEGRARGRHRVEADAADAAPTAAARRAGR-------ARPRGRRHREHGTRS 382
QRR S + R + R E A PT++ R + +P G + G+RS
Sbjct: 155 QRRGSGCSPSADQQRAQDREEEATAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRS 214
Query: 383 --DARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAE 418
+ GQRRG PS+ + + + A+
Sbjct: 215 SPSRQPAGGTGQRRGSRSS--PSADQQRAQDREEEAAQ 250
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 43.9 bits (102), Expect = 3e-04
Identities = 50/191 (26%), Positives = 64/191 (33%), Gaps = 13/191 (6%)
Query: 230 ERGERARIRERKGREGPSRPRR-GLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAA 288
+R +R G G P+R G G +G P A DKP + AAA
Sbjct: 292 QRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAA 351
Query: 289 GAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHR 348
A T A E S ++ RG G G RR R ++RRRS + R R
Sbjct: 352 AAPTPPARGKESPSPRSAPSSQGRGGRAAG---GAGRRRR--RRRRRRRSRSSASAPRRR 406
Query: 349 VEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQ 408
A P ++R RA R R PG G + +
Sbjct: 407 GRRRPRPAPPRGSSRSLSRA-------RSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAK 459
Query: 409 LRPHSQLPAET 419
RP PA T
Sbjct: 460 ERPPRARPAST 470
Score = 37.7 bits (86), Expect = 0.020
Identities = 52/201 (25%), Positives = 74/201 (36%), Gaps = 40/201 (19%)
Query: 230 ERGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAG 289
+R + R+R+ R S+ +R + R P S + +G P+ +
Sbjct: 212 DRSDSGSRRKRRHRSRSSKCKRKEKNKEKKR----PHTESPGRRSHRHSSGSSHSPSLSS 267
Query: 290 AGTEAAAAHEEGSKAGDSGAEP---RGLAPHGPHPSCGE-----RRPGGRWQQRRRSHEG 341
+++ + K D G + R P PS G +R GG Q R +H G
Sbjct: 268 HYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQ-RSGAHGG 326
Query: 342 RARGRH-----------RVEADAADAAPTAAAR---------------RAGRARP-RGRR 374
R H RV AA AAPT AR R GRA GRR
Sbjct: 327 RPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRR 386
Query: 375 HREHGTRSDARAVAAPGQRRG 395
R R +R+ A+ +RRG
Sbjct: 387 RRRRRRRRRSRSSASAPRRRG 407
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 43.1 bits (100), Expect = 5e-04
Identities = 80/292 (27%), Positives = 108/292 (36%), Gaps = 41/292 (14%)
Query: 124 RERGRPGSSSAVALESQ---MTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
+ RG +S + ++Q + LR K C++++ + P +L +R ++ PV
Sbjct: 119 KNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-PVYL 177
Query: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
P P +E G+ G R + L +AAP G AR+RE
Sbjct: 178 GNKPTP---PRQE---------GSFGGRPKSQPPLPQETAAPAPQPGPT--APPARVREP 223
Query: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
EG SR R L+ AA R P +LS R G P GP G G +AAA
Sbjct: 224 GRAEGASREPR-LRSRAA-RPPPAPGPGALSRASRSRAAGRP-GPGFHG-GEKAAAPRAP 279
Query: 301 GSKAG-DSGAEPRGLAPHGPHPSC-------------GERRPGGRWQQRRRSHEG---RA 343
G G + GA R P G+ G Q S G R
Sbjct: 280 GGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRF 339
Query: 344 RGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRG 395
R R + T A G A P GRRH E + RA + G RRG
Sbjct: 340 CRRRRRRGGGGEGEGTHATH--GPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 42.7 bits (99), Expect = 6e-04
Identities = 57/216 (26%), Positives = 73/216 (33%), Gaps = 19/216 (8%)
Query: 177 PVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSL----ERG 232
P+ P E ++ P G G R + PP VGS+ E+G
Sbjct: 1208 PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG 1267
Query: 233 ERARIRER--KGREGPSRPR--RGLQGTAAGRVRADPDDASLST-DKPQRGTGGPLG-PA 286
E G G P+ RG +G A A P A D +G GP+G P
Sbjct: 1268 EPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPG 1327
Query: 287 AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSC--------GERRPGGRWQQRRRS 338
G E A ++G GD G + P P PS G+R P G R
Sbjct: 1328 DPGPPGEPGPAGQDGV-GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1386
Query: 339 HEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR 374
E A+G E P AG+ P G R
Sbjct: 1387 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLR 1422
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 42.7 bits (99), Expect = 6e-04
Identities = 57/216 (26%), Positives = 73/216 (33%), Gaps = 19/216 (8%)
Query: 177 PVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSL----ERG 232
P+ P E ++ P G G R + PP VGS+ E+G
Sbjct: 1157 PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG 1216
Query: 233 ERARIRER--KGREGPSRPR--RGLQGTAAGRVRADPDDASLST-DKPQRGTGGPLG-PA 286
E G G P+ RG +G A A P A D +G GP+G P
Sbjct: 1217 EPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPG 1276
Query: 287 AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSC--------GERRPGGRWQQRRRS 338
G E A ++G GD G + P P PS G+R P G R
Sbjct: 1277 DPGPPGEPGPAGQDGV-GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1335
Query: 339 HEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR 374
E A+G E P AG+ P G R
Sbjct: 1336 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLR 1371
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 42.7 bits (99), Expect = 6e-04
Identities = 57/216 (26%), Positives = 73/216 (33%), Gaps = 19/216 (8%)
Query: 177 PVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSL----ERG 232
P+ P E ++ P G G R + PP VGS+ E+G
Sbjct: 1196 PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG 1255
Query: 233 ERARIRER--KGREGPSRPR--RGLQGTAAGRVRADPDDASLST-DKPQRGTGGPLG-PA 286
E G G P+ RG +G A A P A D +G GP+G P
Sbjct: 1256 EPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPG 1315
Query: 287 AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSC--------GERRPGGRWQQRRRS 338
G E A ++G GD G + P P PS G+R P G R
Sbjct: 1316 DPGPPGEPGPAGQDGV-GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1374
Query: 339 HEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR 374
E A+G E P AG+ P G R
Sbjct: 1375 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLR 1410
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 42.7 bits (99), Expect = 6e-04
Identities = 58/241 (24%), Positives = 82/241 (34%), Gaps = 26/241 (10%)
Query: 128 RPGSSSAV-ALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTASAAAAP 186
RP S S + L+ R++RC ++ VA A + P + AA+
Sbjct: 444 RPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASA----------PCAPAPAASG 493
Query: 187 SFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGP 246
EE E GAG G EP +A P G E + G P
Sbjct: 494 RPPRAEELERRALAGAGGVGAAGAEPP-----NAGDPFKAGEAETNDTNGYSSGGGGHSP 548
Query: 247 SRPRRGLQGTAAGRVRADPDDASLSTDKPQ-----RGTGGPLGPAAAGAGTEAAAAHEEG 301
S G D +D + T+ + RG GG LG +G A G
Sbjct: 549 SAD----SGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPG 604
Query: 302 SKAGDSGAE-PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
+ ++ A PR +P P P G PGG + + R R +D+ P
Sbjct: 605 ATVDEAAAPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRR 664
Query: 361 A 361
A
Sbjct: 665 A 665
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 42.7 bits (99), Expect = 6e-04
Identities = 50/171 (29%), Positives = 65/171 (38%), Gaps = 20/171 (11%)
Query: 230 ERGERARIRER--KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLG-PA 286
ERGER ER +GR+GP GL GT P +S D+P G G G P
Sbjct: 2059 ERGERGEKGERGEQGRDGPP----GLPGTPGP---PGPPGPKVSVDEPGPGLSGEQGPPG 2111
Query: 287 AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGR---- 342
GA E + ++G K GD G P P + PG ++ EG+
Sbjct: 2112 LKGAKGEPGSNGDQGPK-GDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQ 2170
Query: 343 -ARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQ 392
RG D P A AG A P+G G + + PG+
Sbjct: 2171 GPRGPPGPVGGHGDPGPPGAPGLAGPAGPQG----PSGLKGEPGETGPPGR 2217
Score = 36.6 bits (83), Expect = 0.045
Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 223 PDMVGSLERGERARIRERKGREGPSRPR--RGLQGTAAGRVRADPDDASLSTDKPQRGTG 280
P G + GE + RKG GPS P RG G R ++ DK RG
Sbjct: 1349 PGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGER 1408
Query: 281 GPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGER 326
GP GP G A E G P+G P GP GE+
Sbjct: 1409 GPPGPGEGG-----IAPGEPGLPGLPGSPGPQG--PVGPPGKKGEK 1447
Score = 36.2 bits (82), Expect = 0.059
Identities = 43/179 (24%), Positives = 57/179 (31%), Gaps = 14/179 (7%)
Query: 222 PPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGG 281
PP + G+ +G++ +G GP P G G A G +P L +G G
Sbjct: 1390 PPGLPGTAMKGDKGD----RGERGPPGPGEG--GIAPG----EPGLPGLPGSPGPQGPVG 1439
Query: 282 PLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRG----LAPHGPHPSCGERRPGGRWQQRRR 337
P G +E A G PRG + P G G G +R
Sbjct: 1440 PPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGP 1499
Query: 338 SHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGD 396
+RG V P GR +G R AVA P +GD
Sbjct: 1500 PGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGD 1558
Score = 31.2 bits (69), Expect = 1.9
Identities = 55/225 (24%), Positives = 71/225 (31%), Gaps = 40/225 (17%)
Query: 211 EPGVLLCFSAAPPDMVGSL----------ERGERA--RIRERKGREGPSRPRRGLQGTAA 258
EPG L PP + G+ +G+R I+ +G GP R + G G
Sbjct: 2098 EPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGP-RGQDGNPGLPG 2156
Query: 259 GRVRADPD-----DASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKA--GDSGAEP 311
R A P+ P G G P P A G A G K G++G
Sbjct: 2157 ERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPG 2216
Query: 312 RGL----------APHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAA 361
RGL P GP G + G Q + + A GR D
Sbjct: 2217 RGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGV 2276
Query: 362 ARRAGRARPRGRRHREHGTRSDARAV----------AAPGQRRGD 396
G P G + T + +AV APG GD
Sbjct: 2277 PGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGD 2321
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 42.4 bits (98), Expect = 8e-04
Identities = 46/180 (25%), Positives = 68/180 (37%), Gaps = 24/180 (13%)
Query: 227 GSLERGERARIRERKGR--EGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLG 284
G R ++A + K R EG RRG + AG SL K +RG G G
Sbjct: 149 GKQPRRQKAAVAGAKSRGGEGKKPQRRGQKAATAGAKSRGGGVRSLGGKKMRRGQKGAAG 208
Query: 285 PAAAGAGTEAAAAHEEGSKAGDSGAE-PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRA 343
G G + ++ SK+G + P+ A G R + R+R + A
Sbjct: 209 AKRCGGGKQPRRRGQKASKSGGVRCQTPQKAAAQGVK---------SRKKLRQRGQKAAA 259
Query: 344 RGRHRVEADAADAAPTAAARRAG---------RARPRGRRHREHGTRSDARAVAAPGQRR 394
G+ EA A + G +R RG++ G + +A AA G+RR
Sbjct: 260 AGQ---EAAAGKTCGGGGEKHRGGGDKKPLRKNSRWRGQKAAAAGGKKPQKAAAAGGERR 316
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.0 bits (97), Expect = 0.001
Identities = 60/214 (28%), Positives = 77/214 (35%), Gaps = 35/214 (16%)
Query: 211 EPGVLLCFSAAPPDMVGSLERGER--ARIRERKGREGP-------SRPRRGLQGTAAGRV 261
EPGV+ A P L GER A I KG +G P R A G V
Sbjct: 623 EPGVVGAVGTAGPSGPSGLP-GERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAV 681
Query: 262 RADPDDASLSTDKPQRGTGGPLGPAAA----------------GAGTEAAAAHEEGSKAG 305
A P A + D+ + G GP GPA G A AA + G+K G
Sbjct: 682 GA-PGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAK-G 739
Query: 306 DSGAE-PRG----LAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
+ GA+ P+G + P GP + G P G +G G A P
Sbjct: 740 ERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPG 799
Query: 361 AARRAGRARPRGRRHRE--HGTRSDARAVAAPGQ 392
+ +G P G +E G R D V G+
Sbjct: 800 PSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGE 833
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 42.0 bits (97), Expect = 0.001
Identities = 80/310 (25%), Positives = 108/310 (34%), Gaps = 31/310 (10%)
Query: 107 GSGGALCGTAAGMLGWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAA--PRLSLS 164
G G A G AAG G GR GS + AL +++ C ++ V AAA R++
Sbjct: 9 GGGDAGKGNAAGGGGGGRSATTAGSRAVSALCLLLSVGSAAACLLLGVQAAALQGRVAAL 68
Query: 165 IVWRRRLYSSVLPVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPD 224
R L + P A A P +L+ G P +C PP
Sbjct: 69 EEERELLRRAGPPGALDAWAEPHLERLLREKLD---GLAKIRTAREAPSECVC-PPGPPG 124
Query: 225 MVGSLERGERARIRERKGREGPSRP-----RRGLQGTAAGRVRADPDDASLSTDKPQRGT 279
G R + GR+G P + GL G + P D D+ Q G
Sbjct: 125 RRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKG--EKGAPGDFGPRGDQGQDGA 182
Query: 280 GGPLG-PAAAGAGTEAAAAHEEGSKAGDSGAEPRG-------LAPHGPHPSCGERR-PGG 330
GP G P GA ++G + A P+G + P GP GE PG
Sbjct: 183 AGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEPGVPGK 242
Query: 331 RWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGR-RHREHGTRSDARAVAA 389
+ S G + + P G P+G HR GT A A
Sbjct: 243 KGDDGTPSQPGPPGPK----GEPGSMGPRGENGVDGAPGPKGEPGHR--GTDGAAGPRGA 296
Query: 390 PGQR--RGDT 397
PG + +GDT
Sbjct: 297 PGLKGEQGDT 306
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 42.0 bits (97), Expect = 0.001
Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 30/223 (13%)
Query: 219 SAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRG 278
S+AP D ERG + E G P+ PRR + + R+ P + S K + G
Sbjct: 721 SSAPADS----ERGPKP---EPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGSSGKKDEGG 773
Query: 279 TG------------GPLGPAA----AGAGTEAAAAHEEGSKAGDSGAEPRGLAP-HGPHP 321
G G L P++ AG + ++H +GD ++ H P
Sbjct: 774 GGSSSQDHGGRKHKGELPPSSCQRRAGTKRSSRSSHRSQPSSGDEDSDDASSHRLHQKSP 833
Query: 322 SC----GERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHRE 377
S E G R RS GR HR + ++ A++ ++ +R R
Sbjct: 834 SQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDS 893
Query: 378 HGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
+ SD + D DY +SS H+ + H ++ D
Sbjct: 894 YSDYSDRSRRHSKRSHDSDDSDY--ASSKHRSKRHKYSSSDDD 934
Score = 35.8 bits (81), Expect = 0.077
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 31/208 (14%)
Query: 212 PGVLLCFSAAPPDMVGS---------LERGERARIRERKGREGP----SRPRRGLQGTAA 258
P LL F+ A P + S L R + AR KG E P S + LQG
Sbjct: 552 PSELLIFTKAEPSISYSCNPLYFDFKLSRNKDART---KGTEKPKDIGSSSKDHLQGLDP 608
Query: 259 GRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHG 318
G + + +K R +GG + A+G+ E G G S E G +
Sbjct: 609 GEPNKSKE---VGGEKIVRSSGGRMDAPASGSACSGLNKQEPGGSHG-SETEDTGRS--- 661
Query: 319 PHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREH 378
PS ER ++++ H+ ++ + + +AD + + A + + R + +R +
Sbjct: 662 -LPSKKERSGKSHRHKKKKKHKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKRKKN- 719
Query: 379 GTRSDARAVAAPGQRRGDTEDYLPSSSP 406
++ A RG + S SP
Sbjct: 720 ------KSSAPADSERGPKPEPPGSGSP 741
Score = 29.6 bits (65), Expect = 5.5
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 322 SCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTR 381
SC + R R R RS R+RGR R ++ + + + RR+ + +R
Sbjct: 938 SCSQSRSRSRSHTRERS---RSRGRSR----SSSCSRSRSKRRSRSTTAHSWQRSRSYSR 990
Query: 382 SDARAVAAPGQRRGDTEDYLPSSSPHQ 408
+R+ +P QR G + SP +
Sbjct: 991 DRSRSTRSPSQRSGSRKRSWGHESPEE 1017
>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
sapiens]
Length = 600
Score = 41.6 bits (96), Expect = 0.001
Identities = 51/186 (27%), Positives = 65/186 (34%), Gaps = 38/186 (20%)
Query: 201 GAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGR 260
G GAGGER G + F RAR+ +GR G +QG R
Sbjct: 250 GHGAGGERG---GAAVEF---------------RARVHCHRGRAGGQGGDFAVQGPRGRR 291
Query: 261 V--RADPDDASLSTDKPQRGTGGPLGPAAAGAGTE-AAAAHEEGSKAGDSGAEPRGLAPH 317
+ + + D+ + G G P A G E A H G G
Sbjct: 292 HGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVAVHRAGGCRRGGGRR------- 344
Query: 318 GPHPSCGERRPGGRWQQRRRSHEGRARGRH----RVEADAADAAPTAAARRAGRARPRGR 373
CG R G R Q R H G+A G VE P + RR+GR RG
Sbjct: 345 -----CGHVRVGVREQASERGH-GQALGGQDVLLEVEGQGGRGRPGQSLRRSGRGHGRGI 398
Query: 374 RHREHG 379
+ R+ G
Sbjct: 399 QARDTG 404
Score = 30.8 bits (68), Expect = 2.5
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 298 HEEGSKAGDSGAEPRGLAPHGPHPS---CGERRPGGRW---QQRRRSHEGRARGRHRVEA 351
H G +A D+G PR G H S GE P G+ Q+ R E + R EA
Sbjct: 394 HGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLAGVQEERVPVEELLARQARGEA 453
Query: 352 DAADAAPTAAARRAGRARPRGRRHREHGTRSDARA 386
+A A R GR R R R G + RA
Sbjct: 454 EARQGA--LGQVRGGRVRL--HRERREGLLARERA 484
>gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 510
Score = 41.6 bits (96), Expect = 0.001
Identities = 51/186 (27%), Positives = 65/186 (34%), Gaps = 38/186 (20%)
Query: 201 GAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGR 260
G GAGGER G + F RAR+ +GR G +QG R
Sbjct: 107 GHGAGGERG---GAAVEF---------------RARVHCHRGRAGGQGGDFAVQGPRGRR 148
Query: 261 V--RADPDDASLSTDKPQRGTGGPLGPAAAGAGTE-AAAAHEEGSKAGDSGAEPRGLAPH 317
+ + + D+ + G G P A G E A H G G
Sbjct: 149 HGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVAVHRAGGCRRGGGRR------- 201
Query: 318 GPHPSCGERRPGGRWQQRRRSHEGRARGRH----RVEADAADAAPTAAARRAGRARPRGR 373
CG R G R Q R H G+A G VE P + RR+GR RG
Sbjct: 202 -----CGHVRVGVREQASERGH-GQALGGQDVLLEVEGQGGRGRPGQSLRRSGRGHGRGI 255
Query: 374 RHREHG 379
+ R+ G
Sbjct: 256 QARDTG 261
Score = 30.8 bits (68), Expect = 2.5
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 298 HEEGSKAGDSGAEPRGLAPHGPHPS---CGERRPGGRW---QQRRRSHEGRARGRHRVEA 351
H G +A D+G PR G H S GE P G+ Q+ R E + R EA
Sbjct: 251 HGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLAGVQEERVPVEELLARQARGEA 310
Query: 352 DAADAAPTAAARRAGRARPRGRRHREHGTRSDARA 386
+A A R GR R R R G + RA
Sbjct: 311 EARQGA--LGQVRGGRVRL--HRERREGLLARERA 341
>gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo
sapiens]
Length = 457
Score = 41.6 bits (96), Expect = 0.001
Identities = 51/186 (27%), Positives = 65/186 (34%), Gaps = 38/186 (20%)
Query: 201 GAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGR 260
G GAGGER G + F RAR+ +GR G +QG R
Sbjct: 107 GHGAGGERG---GAAVEF---------------RARVHCHRGRAGGQGGDFAVQGPRGRR 148
Query: 261 V--RADPDDASLSTDKPQRGTGGPLGPAAAGAGTE-AAAAHEEGSKAGDSGAEPRGLAPH 317
+ + + D+ + G G P A G E A H G G
Sbjct: 149 HGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVAVHRAGGCRRGGGRR------- 201
Query: 318 GPHPSCGERRPGGRWQQRRRSHEGRARGRH----RVEADAADAAPTAAARRAGRARPRGR 373
CG R G R Q R H G+A G VE P + RR+GR RG
Sbjct: 202 -----CGHVRVGVREQASERGH-GQALGGQDVLLEVEGQGGRGRPGQSLRRSGRGHGRGI 255
Query: 374 RHREHG 379
+ R+ G
Sbjct: 256 QARDTG 261
Score = 30.8 bits (68), Expect = 2.5
Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 298 HEEGSKAGDSGAEPRGLAPHGPHPS---CGERRPGGRW---QQRRRSHEGRARGRHRVEA 351
H G +A D+G PR G H S GE P G+ Q+ R E + R EA
Sbjct: 251 HGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLAGVQEERVPVEELLARQARGEA 310
Query: 352 DAADAAPTAAARRAGRARPRGRRHREHGTRSDARA 386
+A A R GR R R R G + RA
Sbjct: 311 EARQGA--LGQVRGGRVRL--HRERREGLLARERA 341
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 41.6 bits (96), Expect = 0.001
Identities = 56/217 (25%), Positives = 75/217 (34%), Gaps = 21/217 (9%)
Query: 177 PVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSL----ERG 232
P+ PS E ++ P G G R PP VG+L E+G
Sbjct: 1068 PIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKG 1127
Query: 233 ERAR-----IRERKGREGPSRPRRGLQGTAAGRVRADPDDASLST-DKPQRGTGGPLG-P 285
E I+ G +GP R RG +G + P T D +G GP+G P
Sbjct: 1128 EPGESGSPGIQGEPGVKGP-RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFP 1186
Query: 286 AAAGAGTEAAAAHEEGSKAGDSGAE--------PRGLAPHGPHPSCGERRPGGRWQQRRR 337
G E ++G+K GD G + P +GP G+R P G R
Sbjct: 1187 GDPGPPGEGGPRGQDGAK-GDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGR 1245
Query: 338 SHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR 374
A+G P A AG+ P G R
Sbjct: 1246 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLR 1282
Score = 37.7 bits (86), Expect = 0.020
Identities = 51/204 (25%), Positives = 67/204 (32%), Gaps = 39/204 (19%)
Query: 242 GREGPSRPR-----RGLQGTAAGR-------VRADPDDASLSTDKPQRGTGGPLGP---- 285
G++GP+ R RGL GTA G P A ++ G+GGP+GP
Sbjct: 890 GKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRP 949
Query: 286 ---AAAGAGTEAAAAHEEG--SKAGDSGAE-PRGL-APHGPHPSCGERRPGGRWQQRRRS 338
GA E E+G G G + P GL P GP GE G +
Sbjct: 950 GPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQK 1009
Query: 339 HEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR--------HREHGTRS-------- 382
+G H P AG G R + GTR
Sbjct: 1010 GTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPI 1069
Query: 383 DARAVAAPGQRRGDTEDYLPSSSP 406
+ + P +G+T D P P
Sbjct: 1070 GLQGLPGPSGEKGETGDVGPMGPP 1093
Score = 28.9 bits (63), Expect = 9.4
Identities = 71/270 (26%), Positives = 86/270 (31%), Gaps = 45/270 (16%)
Query: 171 LYSSVLPVTASAAAAPSFSPTEESE---LEP-FLGAGAGGERNREPGVLLCFSAAPPDMV 226
L SS+LP AA P E+ E LEP L G G P L+ PP +
Sbjct: 277 LESSLLPPLEEAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEG--PAGLI----GPPGIQ 330
Query: 227 GSL-------ERGE--RARIRERKGREGPSRP------RRGLQGTAAGRVRADPD-DASL 270
G+ ERG RA + G GP R G G G V A + A
Sbjct: 331 GNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQA 390
Query: 271 STDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGG 330
+ + GP GP G+SG L P GP G P G
Sbjct: 391 ILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESG----DLGPQGPRGPQGLTGPPG 446
Query: 331 RWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAP 390
+ +R R+ ARG D G E G R D A P
Sbjct: 447 KAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPG----------EKGHRGDTGAQGLP 496
Query: 391 GQ-----RRGDTEDYLPSSSPHQLRPHSQL 415
G RGD + P P + P L
Sbjct: 497 GPPGEDGERGDDGEIGPRGLPGESGPRGLL 526
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,468,282
Number of Sequences: 37866
Number of extensions: 1178593
Number of successful extensions: 6722
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 625
Number of HSP's that attempted gapping in prelim test: 5741
Number of HSP's gapped (non-prelim): 1434
length of query: 430
length of database: 18,247,518
effective HSP length: 105
effective length of query: 325
effective length of database: 14,271,588
effective search space: 4638266100
effective search space used: 4638266100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.