Guide to the Human Genome
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Name: LOC100292328 Sequence: fasta or formatted (243aa) NCBI GI: 239757439
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         26           2
 C cysteine            1.6          4           1
 D aspartate           1.2          3           1
 E glutamate           5.3         13           2
 F phenylalanine       1.2          3           1
 G glycine            12.3         30           3
 H histidine           3.7          9           1
 I isoleucine          2.5          6           1
 K lysine              2.1          5           1
 L leucine             7.8         19           2
 M methionine          0.4          1           1
 N asparagine          2.9          7           2
 P proline            11.9         29           3
 Q glutamine           3.7          9           2
 R arginine           12.8         31           2
 S serine              8.2         20           2
 T threonine           5.3         13           1
 V valine              4.1         10           2
 W tryptophan          2.1          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287025          1.000   PREDICTED: hypothetical protein 
LOC100287025          1.000   PREDICTED: hypothetical protein XP_002344222 
LOC100132369          0.043   PREDICTED: hypothetical protein 
LOC100132369          0.043   PREDICTED: hypothetical protein 
LOC100132369          0.043   PREDICTED: hypothetical protein 
LOC100290372          0.027   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.027   PREDICTED: hypothetical protein XP_002342652 
CIC                   0.027   capicua homolog 
LOC100291890          0.025   PREDICTED: hypothetical protein XP_002344521 
LOC100130360          0.025   PREDICTED: hypothetical protein 
LOC100287119          0.025   PREDICTED: hypothetical protein XP_002342305 
FAM189B               0.025   hypothetical protein LOC10712 isoform b 
FAM189B               0.025   hypothetical protein LOC10712 isoform a 
PLXNB1                0.025   plexin B1 
PLXNB1                0.025   plexin B1 
FAM53C                0.025   hypothetical protein LOC51307 
FAM53C                0.025   hypothetical protein LOC51307 
HHIPL1                0.025   HHIP-like protein 1 isoform a 
PLEKHA4               0.023   pleckstrin homology domain containing family A memb...
LOC728800             0.023   PREDICTED: hypothetical protein 
LOC100128392          0.023   PREDICTED: hypothetical protein 
LOC100128392          0.023   PREDICTED: hypothetical protein 
LOC100128392          0.023   PREDICTED: hypothetical protein 
CCNK                  0.023   cyclin K isoform 1 
SF1                   0.023   splicing factor 1 isoform 2 
FOXQ1                 0.021   forkhead box Q1 
C1orf229              0.021   hypothetical protein LOC388759 
ARX                   0.021   aristaless related homeobox 
INSM1                 0.021   insulinoma-associated 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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