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Search of human proteins with 169205117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
(257 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 535 e-152
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 532 e-151
gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens] 50 3e-06
gi|7706469 Kruppel-like factor [Homo sapiens] 43 2e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 40 0.002
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 40 0.002
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 40 0.002
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|239741359 PREDICTED: hypothetical protein XP_002342184 [Homo ... 39 0.004
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 39 0.004
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 39 0.006
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 39 0.006
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 39 0.006
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.006
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 39 0.006
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 38 0.008
gi|46409434 hypothetical protein LOC388759 [Homo sapiens] 38 0.010
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 37 0.013
gi|239756307 PREDICTED: similar to ubiquitin-associated protein ... 37 0.013
gi|239750857 PREDICTED: similar to ubiquitin-associated protein ... 37 0.013
gi|239747673 PREDICTED: doublecortin domain-containing protein E... 37 0.013
gi|239745220 PREDICTED: hypothetical protein [Homo sapiens] 37 0.013
gi|239741542 PREDICTED: doublecortin domain-containing protein E... 37 0.013
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 37 0.013
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 37 0.013
gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens] 37 0.013
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 535 bits (1378), Expect = e-152
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MYIGKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQ 60
MYIGKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQ
Sbjct: 1 MYIGKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQ 60
Query: 61 RKLSTTWLGGAGGPFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPT 120
RKLSTTWLGGAGGPFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPT
Sbjct: 61 RKLSTTWLGGAGGPFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPT 120
Query: 121 PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT 180
PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT
Sbjct: 121 PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT 180
Query: 181 PVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPP 240
PVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPP
Sbjct: 181 PVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPP 240
Query: 241 GGRLAHPGSASGPNRNE 257
GGRLAHPGSASGPNRNE
Sbjct: 241 GGRLAHPGSASGPNRNE 257
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 532 bits (1370), Expect = e-151
Identities = 256/257 (99%), Positives = 256/257 (99%)
Query: 1 MYIGKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQ 60
MYIGKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQ
Sbjct: 1 MYIGKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQ 60
Query: 61 RKLSTTWLGGAGGPFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPT 120
RKLSTTWLGGAGGPFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPT
Sbjct: 61 RKLSTTWLGGAGGPFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPT 120
Query: 121 PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT 180
PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT
Sbjct: 121 PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT 180
Query: 181 PVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPP 240
PVCCRVLLVRARGKPGCSPR GAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPP
Sbjct: 181 PVCCRVLLVRARGKPGCSPRRGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPP 240
Query: 241 GGRLAHPGSASGPNRNE 257
GGRLAHPGSASGPNRNE
Sbjct: 241 GGRLAHPGSASGPNRNE 257
>gi|170014689 VPS10 domain receptor protein SORCS 2 [Homo sapiens]
Length = 1159
Score = 49.7 bits (117), Expect = 3e-06
Identities = 47/131 (35%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 111 GVSRTTAGPTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICA 170
G SR + GP P RAP P PPPP R LL + LL + A GR R+
Sbjct: 5 GPSRASKGPGPTARAPSPGAPPPPRSPRSRPLLLL----LLLLGACGAAGRSPEPGRL-- 58
Query: 171 NGFYKQSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRL-PRAPGPSPPPLP 229
G + Q + P SP G A PG E + R P APGPSP P P
Sbjct: 59 -GPHAQLTRVP---------------RSPPAGRAEPGGGEDRQARGTEPGAPGPSPGPAP 102
Query: 230 A----SADAAG 236
A AAG
Sbjct: 103 GPGEDGAPAAG 113
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 43.1 bits (100), Expect = 2e-04
Identities = 54/165 (32%), Positives = 65/165 (39%), Gaps = 33/165 (20%)
Query: 107 VGRDGVSRTTAG---PTPIPRA---PRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALG 160
+G DG+ A P P P A P P PPP S G++ E+L R L AL
Sbjct: 51 MGLDGLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAGGLVSELL-RPELDAPLGPAL- 108
Query: 161 RQRGSYRICANGFYKQSRKTPVCCRVLLVRARGKPGCSP----------RGGAAGPGA-C 209
G + + G ++ G GC+P R GA GP A C
Sbjct: 109 --HGRFLLAPPGRLVKAEPPE-------ADGGGGYGCAPGLTRGPRGLKREGAPGPAASC 159
Query: 210 ELGEGRRLPRAPGPSPPPLPASADAAGRLP-PGGRLAHPGSASGP 253
G G R P P P PPL S D RLP PG R + P GP
Sbjct: 160 MRGPGGRPP--PPPDTPPL--SPDGPARLPAPGPRASFPPPFGGP 200
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 40.4 bits (93), Expect = 0.002
Identities = 26/72 (36%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 189 VRARGKPGCSPRGGAAGPGACELGEGRRL-------PRAPGPSPPPLPASADAAGRLPPG 241
V A P SP GGA G G L P P PPP P A+ P
Sbjct: 41 VSAGSSPAGSPGGGAGGEGLGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPAS 100
Query: 242 GRLAHPGSASGP 253
G A PG A+GP
Sbjct: 101 GPPAPPGLAAGP 112
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 40.4 bits (93), Expect = 0.002
Identities = 59/190 (31%), Positives = 68/190 (35%), Gaps = 22/190 (11%)
Query: 69 GGAGGPFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVS--------RTTAGPT 120
G G P P R + GP LG G+G+P G GVS R GP+
Sbjct: 89 GRDGPPGPKGAPGERGSLGPPGPPGLG----GKGLPGPPGEAGVSGPPGGIGLRGPPGPS 144
Query: 121 PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT 180
+P P P PP P PG GVL E + LQ G GF +
Sbjct: 145 GLPGLPGPPGPPGP-PGHPGVLPE--GATDLQCPSICPPGPPGPP---GMPGFKGPTGYK 198
Query: 181 PVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPP 240
V +G PG P G A PG+ L R L PGP P P G P
Sbjct: 199 GEQGEVGKDGEKGDPG--PPGPAGLPGSVGLQGPRGLRGLPGPLGP--PGDRGPIGFRGP 254
Query: 241 GGRLAHPGSA 250
G PG A
Sbjct: 255 PGIPGAPGKA 264
Score = 28.5 bits (62), Expect = 6.0
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 201 GGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPPG--GRLAHPGSASGP 253
GG +L R P APG P PA PPG G + HPG+ P
Sbjct: 530 GGMISEQIAQLAAHLRKPLAPGSIGRPGPAGPPG----PPGPPGSIGHPGARGPP 580
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 40.0 bits (92), Expect = 0.002
Identities = 49/167 (29%), Positives = 65/167 (38%), Gaps = 33/167 (19%)
Query: 104 PSQVGRDGVSRTTAGPTP--IPRAPRPWRPPPPSP--GRVGVLLEVL-----PRSLLQIR 154
P+ G D +S T+A P P P +P P +P P+P + +L ++L P S +
Sbjct: 114 PALDGGDALSCTSASPAPSSAPPSPAPEKPSAPAPEVDELSLLQKLLLATSYPTSSSDTQ 173
Query: 155 RALALGRQRG----SYRICANGFYKQSRKTPV------CCRVLLVRARGKPGCSPRGGAA 204
+ RQ G S R C Q +K P+ C L C G
Sbjct: 174 KEGTAWRQAGLRSKSQRPCVKADSTQDKKAPMMQSQSRSCTELHKHLTSAQCCLQDRGLQ 233
Query: 205 GPGACELGEGRRLP----RAPG---PSPPPLPASAD---AAGRLPPG 241
P + RLP + PG PSP P PAS A GR PG
Sbjct: 234 PPCL----QSPRLPAKEDKEPGEDCPSPQPAPASPQDSLALGRADPG 276
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/223 (25%), Positives = 78/223 (34%), Gaps = 35/223 (15%)
Query: 4 GKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQRKL 63
G++ N+ R LQ T PP G+ + + + +TT+ +S
Sbjct: 48 GQAGNKSERELQ--ARTPAPPRERGESSSP---------RGPTLRGRAKTTRGRSQGAGA 96
Query: 64 STTWLGGAGG---PFPAAQLLPRAACGPAAGRELGVARAGR--GIPSQVGRDGVSRTTAG 118
+ T G + P P P+ P +L R R G + R TT
Sbjct: 97 TETSAGNSAATAAPHPTPASYPQGTISPP---QLPAPRPKRFGGKQRPLWRIRGWETTVA 153
Query: 119 PTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSR 178
P PR + + PPP P G R+ +R A A A G +
Sbjct: 154 RLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAA----------AAQGLRAPAA 203
Query: 179 KTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAP 221
+ P R RA G+PGC P AA A L RR P P
Sbjct: 204 RLPEPTR----RAPGRPGCLPTAAAAAADA--LWRSRRAPLPP 240
Score = 28.5 bits (62), Expect = 6.0
Identities = 49/183 (26%), Positives = 62/183 (33%), Gaps = 35/183 (19%)
Query: 88 PAAGRELGVARAGRGIPSQVGRD----------GVSRTTAGPTPIPRAPRPW-------- 129
PA RE G + + RG P+ GR G + T+AG + AP P
Sbjct: 63 PAPPRERGESSSPRG-PTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGT 121
Query: 130 ----RPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKTPV--- 182
+ P P P R G R L +IR + R+ G R P
Sbjct: 122 ISPPQLPAPRPKRFGGK----QRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTR 177
Query: 183 CCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGR----- 237
CC + + G P A RR P PG P A+ADA R
Sbjct: 178 CCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAP 237
Query: 238 LPP 240
LPP
Sbjct: 238 LPP 240
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/223 (25%), Positives = 78/223 (34%), Gaps = 35/223 (15%)
Query: 4 GKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQRKL 63
G++ N+ R LQ T PP G+ + + + +TT+ +S
Sbjct: 48 GQAGNKSERELQ--ARTPAPPRERGESSSP---------RGPTLRGRAKTTRGRSQGAGA 96
Query: 64 STTWLGGAGG---PFPAAQLLPRAACGPAAGRELGVARAGR--GIPSQVGRDGVSRTTAG 118
+ T G + P P P+ P +L R R G + R TT
Sbjct: 97 TETSAGNSAATAAPHPTPASYPQGTISPP---QLPAPRPKRFGGKQRPLWRIRGWETTVA 153
Query: 119 PTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSR 178
P PR + + PPP P G R+ +R A A A G +
Sbjct: 154 RLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAA----------AAQGLRAPAA 203
Query: 179 KTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAP 221
+ P R RA G+PGC P AA A L RR P P
Sbjct: 204 RLPEPTR----RAPGRPGCLPTAAAAAADA--LWRSRRAPLPP 240
Score = 28.5 bits (62), Expect = 6.0
Identities = 49/183 (26%), Positives = 62/183 (33%), Gaps = 35/183 (19%)
Query: 88 PAAGRELGVARAGRGIPSQVGRD----------GVSRTTAGPTPIPRAPRPW-------- 129
PA RE G + + RG P+ GR G + T+AG + AP P
Sbjct: 63 PAPPRERGESSSPRG-PTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGT 121
Query: 130 ----RPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKTPV--- 182
+ P P P R G R L +IR + R+ G R P
Sbjct: 122 ISPPQLPAPRPKRFGGK----QRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTR 177
Query: 183 CCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGR----- 237
CC + + G P A RR P PG P A+ADA R
Sbjct: 178 CCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAP 237
Query: 238 LPP 240
LPP
Sbjct: 238 LPP 240
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/223 (25%), Positives = 78/223 (34%), Gaps = 35/223 (15%)
Query: 4 GKSENRKVRGLQDFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQRKL 63
G++ N+ R LQ T PP G+ + + + +TT+ +S
Sbjct: 48 GQAGNKSERELQ--ARTPAPPRERGESSSP---------RGPTLRGRAKTTRGRSQGAGA 96
Query: 64 STTWLGGAGG---PFPAAQLLPRAACGPAAGRELGVARAGR--GIPSQVGRDGVSRTTAG 118
+ T G + P P P+ P +L R R G + R TT
Sbjct: 97 TETSAGNSAATAAPHPTPASYPQGTISPP---QLPAPRPKRFGGKQRPLWRIRGWETTVA 153
Query: 119 PTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSR 178
P PR + + PPP P G R+ +R A A A G +
Sbjct: 154 RLPEPRVGKLGKGPPPRPAPPGTRCCPGARAAQLLREAAA----------AAQGLRAPAA 203
Query: 179 KTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAP 221
+ P R RA G+PGC P AA A L RR P P
Sbjct: 204 RLPEPTR----RAPGRPGCLPTAAAAAADA--LWRSRRAPLPP 240
Score = 28.5 bits (62), Expect = 6.0
Identities = 49/183 (26%), Positives = 62/183 (33%), Gaps = 35/183 (19%)
Query: 88 PAAGRELGVARAGRGIPSQVGRD----------GVSRTTAGPTPIPRAPRPW-------- 129
PA RE G + + RG P+ GR G + T+AG + AP P
Sbjct: 63 PAPPRERGESSSPRG-PTLRGRAKTTRGRSQGAGATETSAGNSAATAAPHPTPASYPQGT 121
Query: 130 ----RPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKTPV--- 182
+ P P P R G R L +IR + R+ G R P
Sbjct: 122 ISPPQLPAPRPKRFGGK----QRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTR 177
Query: 183 CCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGR----- 237
CC + + G P A RR P PG P A+ADA R
Sbjct: 178 CCPGARAAQLLREAAAAAQGLRAPAARLPEPTRRAPGRPGCLPTAAAAAADALWRSRRAP 237
Query: 238 LPP 240
LPP
Sbjct: 238 LPP 240
>gi|239741359 PREDICTED: hypothetical protein XP_002342184 [Homo
sapiens]
Length = 168
Score = 38.9 bits (89), Expect = 0.004
Identities = 44/150 (29%), Positives = 57/150 (38%), Gaps = 20/150 (13%)
Query: 79 QLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPTPIPRA-PRPWRPPPPSPG 137
QL+P AA P+ R L G +S A P P+P A P R P P G
Sbjct: 14 QLMPPAA-SPSPRRWLSPLLGFANGSGSEGHLCISPPEAPPPPLPAAGPAGVRGPQPPAG 72
Query: 138 RVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKTPVCCRVLLVRARGKPGC 197
+ G + R L + R+ R+ G+ + TP ++L R RG G
Sbjct: 73 KAG------------LERPLRVWREG---RLSGKGWRETPATTP---KLLRARWRGHGGR 114
Query: 198 SPRGGAAGPGACELGEGRRLPRAPGPSPPP 227
G A GP C LG G G PP
Sbjct: 115 LILGVAVGPIGCLLGPGEAETAHSGIREPP 144
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 38.9 bits (89), Expect = 0.004
Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 168 ICANGFYKQ-SRKTPVCCRVLLVRARGKPGCSPRGGAA------GPGACELGEGRRLP-- 218
+ NG K+ SR V+ + ARG PG P GG G A R+P
Sbjct: 32 VLLNGVAKETSRAAAAEPPVIELGARGGPGGGPAGGGGAARDLKGRDAATAEARHRVPTT 91
Query: 219 ---RAPGPSPPPLPASADAAGRLPPGGRL 244
R PGP+P P PAS A LP GR+
Sbjct: 92 ELCRPPGPAPAPAPASVTA--ELPGDGRM 118
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 38.5 bits (88), Expect = 0.006
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 173 FYKQSRKTPVCCRVLLVRARGKPGCS-----PRGGAAG---PGACELGEGRRLPRAPGPS 224
F QSRKT ++ G PG S P+GG PGA G+ P PG
Sbjct: 167 FEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGP 226
Query: 225 PPPLPASADAAGRLPPGGRLAHPGSASGP 253
PPP P AG+ PP L PG P
Sbjct: 227 PPPFP-----AGQTPPRPPLGPPGPPGPP 250
Score = 34.3 bits (77), Expect = 0.11
Identities = 56/216 (25%), Positives = 68/216 (31%), Gaps = 33/216 (15%)
Query: 45 TCCQEKCQTTKQKSAQRKLSTTWLGGAG--GPFPAAQLLPRAACGPAAGRELGVARAGRG 102
T C ++ + + +++ + + G G GP + G GR G G
Sbjct: 157 TPCNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDR 216
Query: 103 IPSQVGRDGVSRTTAGPTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQ 162
P G G P P P P RPP PG G P +L LA
Sbjct: 217 FPGPAGPGGP------PPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLP--PPLAGPPN 268
Query: 163 RGSYRICANGFYKQSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAP- 221
RG R P V G+P P G PG G P P
Sbjct: 269 RGD------------RPPPP------VLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPP 310
Query: 222 ----GPSPPPLPASADAAGRLPPGGRLAHPGSASGP 253
GP PPP P G L P LA P GP
Sbjct: 311 PPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGP 346
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 38.5 bits (88), Expect = 0.006
Identities = 42/133 (31%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
Query: 109 RDGVSRTTAGPTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRI 168
RD A TP RAP P PP R V P +L + A A+GR+ + R
Sbjct: 5 RDKAKAGAAARTPAARAPGLLTPRPPGSPRPPP--PVTPAALRVLGAAGAVGRKPLAERA 62
Query: 169 CANGFYKQSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPL 228
G P R R+ G S R A+ P A G G R P A SP P+
Sbjct: 63 GGIGGATIPESAP---RAGPTRS---AGTSSRNPASRPPAS--GRGERAPPAKNTSPGPV 114
Query: 229 PASADAAGRLPPG 241
+ A+G PG
Sbjct: 115 SSPGRASGTTRPG 127
Score = 28.1 bits (61), Expect = 7.9
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 200 RGGAAGPGACELGEGRRLPRAPG---PSPPPLPA------SADAAGRLPPGGRLAHPGSA 250
+ GAA G PR PG P PP PA +A A GR P R G A
Sbjct: 9 KAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGA 68
Query: 251 SGP 253
+ P
Sbjct: 69 TIP 71
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 38.5 bits (88), Expect = 0.006
Identities = 42/133 (31%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
Query: 109 RDGVSRTTAGPTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRI 168
RD A TP RAP P PP R V P +L + A A+GR+ + R
Sbjct: 5 RDKAKAGAAARTPAARAPGLLTPRPPGSPRPPP--PVTPAALRVLGAAGAVGRKPLAERA 62
Query: 169 CANGFYKQSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPL 228
G P R R+ G S R A+ P A G G R P A SP P+
Sbjct: 63 GGIGGATIPESAP---RAGPTRS---AGTSSRNPASRPPAS--GRGERAPPAKNTSPGPV 114
Query: 229 PASADAAGRLPPG 241
+ A+G PG
Sbjct: 115 SSPGRASGTTRPG 127
Score = 28.1 bits (61), Expect = 7.9
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 200 RGGAAGPGACELGEGRRLPRAPG---PSPPPLPA------SADAAGRLPPGGRLAHPGSA 250
+ GAA G PR PG P PP PA +A A GR P R G A
Sbjct: 9 KAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGA 68
Query: 251 SGP 253
+ P
Sbjct: 69 TIP 71
Score = 28.1 bits (61), Expect = 7.9
Identities = 60/241 (24%), Positives = 80/241 (33%), Gaps = 29/241 (12%)
Query: 24 PLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQRKLSTTWLGGAGGPFPAAQLLPR 83
P PLG++ + T + K ++SA LS GP P
Sbjct: 126 PGPLGQKGLRISAEE------TVARGKATEAPKRSA---LSAGARRDTSGPTPGTPSPAM 176
Query: 84 AACGPAAGRELGVARAGRGI----PSQVGRDGVSRTTAGPTPIPRAPRPWRPPPPSPGRV 139
A AAG E+G+ R P++ R VS + T P P PS G
Sbjct: 177 ARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTT---EPSPAARRRPSAG-- 231
Query: 140 GVLLEVLPRSLLQIRRALALGRQRG-SYRICANGFYKQSRKTPVCCRVLLVRARGKPGCS 198
G L RSL L+ + G S R S+ P + L P +
Sbjct: 232 GGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALR-----PPQVT 286
Query: 199 PRGGAAGPGACELGEGRRLPRAPG-----PSPPPLPASADAAGRLPPGGRLAHPGSASGP 253
P A P L +P P PPP A+ LPP LA P + P
Sbjct: 287 PPRKDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPP 346
Query: 254 N 254
+
Sbjct: 347 S 347
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.5 bits (88), Expect = 0.006
Identities = 53/181 (29%), Positives = 60/181 (33%), Gaps = 25/181 (13%)
Query: 91 GRELGVARAGRGIPSQVGRDGVSRTTA-----GPTPIPRAPRPWRPPPPS-----PGRVG 140
GR GV AGR P + G G GP +P P P PP P PG G
Sbjct: 2046 GRAGGVGEAGR--PGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGP-G 2102
Query: 141 VLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKTPVCCRVLLVRAR-GKPGCSP 199
+ E P L + +G K R P R + G PG
Sbjct: 2103 LSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPG------PRGQDGNPGLPG 2156
Query: 200 RGGAAGPGACELGEGRRLPRAP-----GPSPPPLPASADAAGRLPPGGRLAHPGSASGPN 254
G AGP +G R P P P PP P A AG P G PG P
Sbjct: 2157 ERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPG 2216
Query: 255 R 255
R
Sbjct: 2217 R 2217
Score = 34.3 bits (77), Expect = 0.11
Identities = 25/59 (42%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 192 RGKPG----CSPRGGAAGPGACELGEGRRLPRA---PGPSPPPLPAS--ADAAGRLPPG 241
RG PG P+G PG GEG LP PGPS PP P D R PPG
Sbjct: 1334 RGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPG 1392
Score = 31.2 bits (69), Expect = 0.93
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 193 GKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPP-------------LPASADAAGRLP 239
G PG + GA GP + G +P +PGP PP P G+
Sbjct: 2351 GDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTG 2410
Query: 240 PGGRLAHPG 248
P G + PG
Sbjct: 2411 PRGEMGQPG 2419
Score = 30.4 bits (67), Expect = 1.6
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 168 ICANGFYKQSRKTPVCCRVLLVRA-RGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPP 226
+C F Q R P C V + +G+PG G GP G+ R P P
Sbjct: 1233 LCQASFTTQPRPEP--CPVYCPKGQKGEPGEMGLRGQVGPP----GDPGLPGRTGAPGPQ 1286
Query: 227 PLPASADAAG-RLPPG--GRLAHPGSASGP 253
P SA A G R PG GR PG A P
Sbjct: 1287 GPPGSATAKGERGFPGADGRPGSPGRAGNP 1316
Score = 29.6 bits (65), Expect = 2.7
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 193 GKPGCS-PRG--GAAG----PGACELGEGRRLPRAPGPS-PPPLPASADAAGRLPPGGRL 244
GKPG + P G GAAG PG L R PGPS PP LP G+ G+
Sbjct: 1785 GKPGAAGPSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGKPGLNGKN 1844
Query: 245 AHPGSASGPNR 255
PG R
Sbjct: 1845 GEPGDPGEDGR 1855
Score = 29.3 bits (64), Expect = 3.5
Identities = 23/62 (37%), Positives = 24/62 (38%), Gaps = 6/62 (9%)
Query: 193 GKPGCSPRGGAAGPGACELGE----GRRLPRAP--GPSPPPLPASADAAGRLPPGGRLAH 246
G PG R GPGA E GE G+ PR P P P P G P G
Sbjct: 1700 GPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGD 1759
Query: 247 PG 248
PG
Sbjct: 1760 PG 1761
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 38.5 bits (88), Expect = 0.006
Identities = 46/172 (26%), Positives = 60/172 (34%), Gaps = 9/172 (5%)
Query: 74 PFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTAGPTPIPRAPRPWRPPP 133
P P LL GP + L S DGV P PI A +PW
Sbjct: 110 PCPLRGLLSCLPDGPTSQPHLATTPTDSSCSSGPTGDGVQ---GSPLPIKTADKPWPTRK 166
Query: 134 PSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKTPVCCRVLLVRARG 193
PG +G E P + RR G++RG+ + + C + +LV
Sbjct: 167 EGPGALGG--EPSPPTHSPSRRKSHRGQERGTSEAGISPGNSPLQGLINCLKEILVPGPR 224
Query: 194 KPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADA-AGRLPPGGRL 244
P SP + P LG R GP PP +A +G P G L
Sbjct: 225 HPETSP---SFLPPLPSLGTSRLTRADLGPGSPPWAVKTEAVSGDCPLQGLL 273
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 38.1 bits (87), Expect = 0.008
Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 121 PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT 180
P P +P W PPPP R L LPRS R+ + R R R + + + R++
Sbjct: 9 PRPSSPLSWPPPPP---RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR--RRS 63
Query: 181 PVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGR 237
R G G S GG + GA EG + SPPP P S+ R
Sbjct: 64 RSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAM------SPPP-PRSSSLRSR 113
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 38.1 bits (87), Expect = 0.008
Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 121 PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT 180
P P +P W PPPP R L LPRS R+ + R R R + + + R++
Sbjct: 9 PRPSSPLSWPPPPP---RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR--RRS 63
Query: 181 PVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGR 237
R G G S GG + GA EG + SPPP P S+ R
Sbjct: 64 RSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAM------SPPP-PRSSSLRSR 113
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 38.1 bits (87), Expect = 0.008
Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 121 PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQSRKT 180
P P +P W PPPP R L LPRS R+ + R R R + + + R++
Sbjct: 9 PRPSSPLSWPPPPP---RASSLPRSLPRSPRLCSRSRSRSRSRSRRRSRSLRWLR--RRS 63
Query: 181 PVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGR 237
R G G S GG + GA EG + SPPP P S+ R
Sbjct: 64 RSRSRPFSSGPSGPSGPSSPGGPSSGGASPASEGSAM------SPPP-PRSSSLRSR 113
>gi|46409434 hypothetical protein LOC388759 [Homo sapiens]
Length = 237
Score = 37.7 bits (86), Expect = 0.010
Identities = 54/194 (27%), Positives = 68/194 (35%), Gaps = 50/194 (25%)
Query: 60 QRKLSTTWLGGAG--GPFPAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDGVSRTTA 117
Q + S TW G G G F + LP AA + R L A + R + Q R A
Sbjct: 80 QPEPSLTWAQGRGCRGHFRS---LP-AAASRSGSRTLRCASSDRSLREQKQR------RA 129
Query: 118 GPTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYKQS 177
GP P P P P PSPG +G PR+ RG+Y +
Sbjct: 130 GPDPTPSPAPPPAGPRPSPGSLGPSAPAAPRT------------ARGAYELQGGA----- 172
Query: 178 RKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGR 237
++ PG + G G GEG L G +P P SA R
Sbjct: 173 -------------SQDGPGQAAVGATPTTGPGTGGEGALLGCGSGRTP---PTSATWRRR 216
Query: 238 L-----PPGGRLAH 246
L PPG A+
Sbjct: 217 LLPAEVPPGAAAAN 230
Score = 30.0 bits (66), Expect = 2.1
Identities = 36/126 (28%), Positives = 47/126 (37%), Gaps = 14/126 (11%)
Query: 130 RPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQ-RGSYRICANGFYKQSRKTPVCC---R 185
R PP P +LL+ P A GR RG +R + +T C R
Sbjct: 66 RTRPPHPPNAVLLLQPEPSL------TWAQGRGCRGHFRSLPAAASRSGSRTLRCASSDR 119
Query: 186 VLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAAGRLPPGGRLA 245
L + + + G P A P A R P + GPS P P +A A L G
Sbjct: 120 SLREQKQRRAGPDPTPSPAPPPAGP----RPSPGSLGPSAPAAPRTARGAYELQGGASQD 175
Query: 246 HPGSAS 251
PG A+
Sbjct: 176 GPGQAA 181
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 37.4 bits (85), Expect = 0.013
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 88 PAAGRELGVARAGRGIPSQVGRDGVSRTTAGPTPIPRAPRPWRPPPPSPGRVGVLLEVLP 147
P R L A A + + ++G G T A P P PR P PPP P ++ +L + P
Sbjct: 146 PQPPRSLAAASAWQAVARELGLSGPRPTEAPPFPAPRVRAP--PPPQRPAQLRLLAGLRP 203
Query: 148 RSLLQIRRALALGRQRG 164
+ +L + R+RG
Sbjct: 204 -----VVTSLGVTRRRG 215
>gi|239756307 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 37.4 bits (85), Expect = 0.013
Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 41/194 (21%)
Query: 67 WLGGAG-GPFPAAQLLPRAACGPAA-----GRELGVARAGRGI----------PSQVGRD 110
W+ AG GP P P A P A E G+A A I P + G D
Sbjct: 52 WVEAAGQGPSPYQCGDPGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGED 111
Query: 111 GVSRTTAGPT-PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQI---RRALALGRQRGSY 166
++ P P + +P P P PGR L+VL L++ RR L+ G+
Sbjct: 112 EAEASSGSEEEPAPSSLQPGSPASPGPGRRLCSLDVLRGVRLELAGARRRLSEGKLVSRP 171
Query: 167 RICANGFYKQSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPP 226
R +G + R +C P SPR A+ PG P P+ P
Sbjct: 172 RALLHGL-RGHRALSLC---------PSPAQSPR-SASPPG----------PAPQHPAAP 210
Query: 227 PLPASADAAGRLPP 240
P AG +PP
Sbjct: 211 ASPPRPSTAGAIPP 224
>gi|239750857 PREDICTED: similar to ubiquitin-associated protein 1
(predicted) [Homo sapiens]
Length = 290
Score = 37.4 bits (85), Expect = 0.013
Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 41/194 (21%)
Query: 67 WLGGAG-GPFPAAQLLPRAACGPAA-----GRELGVARAGRGI----------PSQVGRD 110
W+ AG GP P P A P A E G+A A I P + G D
Sbjct: 52 WVEAAGQGPSPYQCGDPGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGED 111
Query: 111 GVSRTTAGPT-PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQI---RRALALGRQRGSY 166
++ P P + +P P P PGR L+VL L++ RR L+ G+
Sbjct: 112 EAEASSGSEEEPAPSSLQPGSPASPGPGRRLCSLDVLRGVRLELAGARRRLSEGKLVSRP 171
Query: 167 RICANGFYKQSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPP 226
R +G + R +C P SPR A+ PG P P+ P
Sbjct: 172 RALLHGL-RGHRALSLC---------PSPAQSPR-SASPPG----------PAPQHPAAP 210
Query: 227 PLPASADAAGRLPP 240
P AG +PP
Sbjct: 211 ASPPRPSTAGAIPP 224
>gi|239747673 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 714
Score = 37.4 bits (85), Expect = 0.013
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 72 GGPFPAAQLLPRAACGPA---------AGRELGVARAGRGIPSQVGRDGVSRTTAGPTPI 122
G P P LPRAAC PA G E A R +V R P P
Sbjct: 63 GSPLPNHLSLPRAACSPARVPRRPVSCPGPEPLALAARRSQSPRVASTRSLRPPGSPVPS 122
Query: 123 PRAPRPWRPPPPS 135
P +PRP P PS
Sbjct: 123 PSSPRPVPVPSPS 135
>gi|239745220 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 37.4 bits (85), Expect = 0.013
Identities = 53/194 (27%), Positives = 71/194 (36%), Gaps = 41/194 (21%)
Query: 67 WLGGAG-GPFPAAQLLPRAACGPAA-----GRELGVARAGRGI----------PSQVGRD 110
W+ AG GP P P A P A E G+A A I P + G D
Sbjct: 52 WVEAAGQGPSPYQCGDPGTASAPPAWLLLVSPEHGLAPAPTTIRDPEAGHQERPEEEGED 111
Query: 111 GVSRTTAGPT-PIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQI---RRALALGRQRGSY 166
++ P P + +P P P PGR L+VL L++ RR L+ G+
Sbjct: 112 EAEASSGSEEEPAPSSLQPGSPASPGPGRRLCSLDVLRGVRLELAGARRRLSEGKLVSRP 171
Query: 167 RICANGFYKQSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPP 226
R +G + R +C P SPR A+ PG P P+ P
Sbjct: 172 RALLHGL-RGHRALSLC---------PSPAQSPR-SASPPG----------PAPQHPAAP 210
Query: 227 PLPASADAAGRLPP 240
P AG +PP
Sbjct: 211 ASPPRPSTAGAIPP 224
>gi|239741542 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 510
Score = 37.4 bits (85), Expect = 0.013
Identities = 26/73 (35%), Positives = 28/73 (38%), Gaps = 9/73 (12%)
Query: 72 GGPFPAAQLLPRAACGPA---------AGRELGVARAGRGIPSQVGRDGVSRTTAGPTPI 122
G P P LPRAAC PA G E A R +V R P P
Sbjct: 63 GSPLPNHLSLPRAACSPARVPRRPVSCPGPEPLALAARRSQSPRVASTRSLRPPGSPVPS 122
Query: 123 PRAPRPWRPPPPS 135
P +PRP P PS
Sbjct: 123 PSSPRPVPVPSPS 135
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 37.4 bits (85), Expect = 0.013
Identities = 41/133 (30%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 16 DFVNTLLPPLPLGKQNKTFKKNQNRKETATCCQEKCQTTKQKSAQRKLSTTWLGGAGGPF 75
DF+ P P+ Q ++ R TA CC E T + +R +TT GA
Sbjct: 174 DFLIRHHGPKPVSSQRNAGTGSRKRVGTARCCGELWATGSKGQGER--ATT--SGAERTA 229
Query: 76 PAAQLLPRAACGPAAGRELGVA-RAGRGIPSQVGRDGVSRTTAGPTPIPRAPR------- 127
P LP A+ +G EL A R R P+ SRT P P P+ R
Sbjct: 230 PRRNCLPGAS---GSGPELDSAPRTARTAPASGSAPRESRT--APEPAPKRMRSRGLFRC 284
Query: 128 ---PWRPPPPSPG 137
P RP P PG
Sbjct: 285 RFLPQRPGPRPPG 297
Score = 28.9 bits (63), Expect = 4.6
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 215 RRLPRAPGPSPPPLPASADA 234
R LP+ PGP PP LPA +A
Sbjct: 285 RFLPQRPGPRPPGLPARPEA 304
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 37.4 bits (85), Expect = 0.013
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 76 PAAQLLPRAACGPAAGRELGVARAGRGIPSQVGRDG-VSRTTAGPTPIPRAPRPWRPPPP 134
PAA L P A P+A R ++ PS VSR +A P P PR+P P PP P
Sbjct: 66 PAASLKPPALLPPSASRASLDSQTSPDSPSSTPTPSPVSRRSASPEPAPRSPVP--PPKP 123
Query: 135 S 135
S
Sbjct: 124 S 124
Score = 35.0 bits (79), Expect = 0.064
Identities = 42/151 (27%), Positives = 53/151 (35%), Gaps = 25/151 (16%)
Query: 117 AGPTPIPRAPRPWRPPPPSPGRV---------GVLLEVLPRSLLQIRRALALGRQRGSYR 167
A P + PR RP PPS R G + LPR+
Sbjct: 8 AATPPTQKPPRIIRPRPPSRSRAAQSPGPPHNGSSPQELPRN-----------SNDAPTP 56
Query: 168 ICANGFYKQ---SRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPR-AP-G 222
+C F++ S K P RA SP ++ P + P AP
Sbjct: 57 MCTPIFWEPPAASLKPPALLPPSASRASLDSQTSPDSPSSTPTPSPVSRRSASPEPAPRS 116
Query: 223 PSPPPLPASADAAGRLPPGGRLAHPGSASGP 253
P PPP P+ + LP G LA GSAS P
Sbjct: 117 PVPPPKPSGSPCTPLLPMAGVLAQNGSASAP 147
>gi|18379346 VPS10 domain receptor protein SORCS 3 [Homo sapiens]
Length = 1222
Score = 37.4 bits (85), Expect = 0.013
Identities = 39/127 (30%), Positives = 45/127 (35%), Gaps = 13/127 (10%)
Query: 116 TAGPTPIPRAPRPWRPPPPSPGRVGVLLEVLPRSLLQIRRALALGRQRGSYRICANGFYK 175
T GP P AP RPP SP + P L RRA LGR+ G + G +
Sbjct: 40 TGGPGR-PAAPAS-RPPALSPLSPRAVASQWPEELASARRAAVLGRRAGPELLPQQGGGR 97
Query: 176 QSRKTPVCCRVLLVRARGKPGCSPRGGAAGPGACELGEGRRLPRAPGPSPPPLPASADAA 235
+ V A G R G P +LG RR RA PP DA
Sbjct: 98 GGE--------MQVEAGGTSPAGERRGRGIPAPAKLGGARRSRRA---QPPITQERGDAW 146
Query: 236 GRLPPGG 242
P G
Sbjct: 147 ATAPADG 153
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,331,911
Number of Sequences: 37866
Number of extensions: 973644
Number of successful extensions: 13845
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 691
Number of HSP's that attempted gapping in prelim test: 10324
Number of HSP's gapped (non-prelim): 3797
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.