Guide to the Human Genome
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Search of human proteins with 169204521

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
         (430 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]           868   0.0  
gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]           868   0.0  
gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]           868   0.0  
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            52   1e-06
gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]     48   1e-05
gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]     48   1e-05
gi|239754474 PREDICTED: similar to mucin [Homo sapiens]                47   3e-05
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ...    47   4e-05
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ...    47   4e-05
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ...    47   4e-05
gi|239757439 PREDICTED: hypothetical protein [Homo sapiens]            46   6e-05
gi|239751956 PREDICTED: hypothetical protein [Homo sapiens]            46   6e-05
gi|239746439 PREDICTED: hypothetical protein XP_002344222 [Homo ...    46   6e-05
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    45   1e-04
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ...    44   2e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens]             44   3e-04
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]            43   5e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    43   6e-04
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    43   6e-04
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    43   6e-04
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  43   6e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          43   6e-04
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]            42   8e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     42   0.001
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]               42   0.001
gi|50962882 G patch domain containing 8 [Homo sapiens]                 42   0.001
gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo ...    42   0.001
gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]            42   0.001
gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo ...    42   0.001
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    42   0.001

>gi|169204521 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 430

 Score =  868 bits (2242), Expect = 0.0
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
           MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT
Sbjct: 1   MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60

Query: 61  GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
           GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML
Sbjct: 61  GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120

Query: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
           GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA
Sbjct: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180

Query: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
           SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER
Sbjct: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240

Query: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
           KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE
Sbjct: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300

Query: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
           GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA
Sbjct: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360

Query: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
           AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD
Sbjct: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420

Query: 421 ILALKKGLPY 430
           ILALKKGLPY
Sbjct: 421 ILALKKGLPY 430


>gi|169205149 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 430

 Score =  868 bits (2242), Expect = 0.0
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
           MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT
Sbjct: 1   MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60

Query: 61  GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
           GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML
Sbjct: 61  GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120

Query: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
           GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA
Sbjct: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180

Query: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
           SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER
Sbjct: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240

Query: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
           KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE
Sbjct: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300

Query: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
           GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA
Sbjct: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360

Query: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
           AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD
Sbjct: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420

Query: 421 ILALKKGLPY 430
           ILALKKGLPY
Sbjct: 421 ILALKKGLPY 430


>gi|169204400 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 430

 Score =  868 bits (2242), Expect = 0.0
 Identities = 430/430 (100%), Positives = 430/430 (100%)

Query: 1   MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60
           MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT
Sbjct: 1   MSNLRKRPSLDIPTALVSSSSISSCCWLRSSCGSLALPPPLPLLAGGGSSLLPTRLGWDT 60

Query: 61  GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120
           GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML
Sbjct: 61  GRSLLVLLGTVEGAGPATACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGML 120

Query: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
           GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA
Sbjct: 121 GWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180

Query: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
           SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER
Sbjct: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240

Query: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
           KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE
Sbjct: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300

Query: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
           GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA
Sbjct: 301 GSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360

Query: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
           AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD
Sbjct: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420

Query: 421 ILALKKGLPY 430
           ILALKKGLPY
Sbjct: 421 ILALKKGLPY 430


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 78/302 (25%), Positives = 113/302 (37%), Gaps = 53/302 (17%)

Query: 109 GGALCGTAAGMLGWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWR 168
           G   C  AAG  G G   G   + + V L ++               +AAP LS +    
Sbjct: 5   GHRQCNQAAGRAGPGAPLGAALARTPVELAAE---------------SAAPALSAAAAGV 49

Query: 169 RRLYSSVLPVTASAAAAPSFSPTEESELEPFLG----------AGAGGERNREPGVLLCF 218
           + L S    +    AAA         +     G          AGAGG  NR  G     
Sbjct: 50  KILGSGDKKLRRQKAAAGGKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAA 109

Query: 219 SAAPPDMVGSLERGERARIRERKGRE-GPSRPRRGLQGTAAGRVRADPDDASLSTDKPQR 277
           +A    + G   RG + R R +K    G  +PR   Q +AA   +              R
Sbjct: 110 AAGTKSLGG---RGRKPRRRGQKAAATGSKKPRWRAQKSAAAGSK-------------NR 153

Query: 278 GTGGPLGPAAAGAGTEAAAAHEEGSKAGD---SGAEPRGLAPHGPHPSCGERRPGGRWQQ 334
           G G     AAAG  ++     ++ + AG    SG +PR         S G+    GR Q+
Sbjct: 154 GAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAK----SRGDEDKKGR-QR 208

Query: 335 RRRSHEGRARG-RHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQR 393
             +S  G+ RG R +       AA  A +RR G  +P+ +R R  G ++     +  G+ 
Sbjct: 209 EAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRR--GQKAATGGKSRVGKS 266

Query: 394 RG 395
           RG
Sbjct: 267 RG 268



 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 84/346 (24%), Positives = 125/346 (36%), Gaps = 50/346 (14%)

Query: 79  ACSPGAAAAGGCWATWEVAVAVTVSSRWGSGGALCGTAAGMLGWGRERGRPGSSSAVALE 138
           A   GA + G      + A A    SR   GG L   +   L    ++       A A  
Sbjct: 461 AAEAGAESRGDKKQGRQKASAAGTKSR---GGGLKSHSGKNLWRRGQKAEAAGEKATAAG 517

Query: 139 SQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTASAAAAPSFSPTEESELEP 198
           ++   R++ R     V  A  R+  S   +R+         A AA A S       +   
Sbjct: 518 AKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQ--------KAVAAGATSHGGGGNKQ--- 566

Query: 199 FLGAGAGGERNREPG--VLLCFSAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGT 256
               G GG + R+ G       +    D     ++      + R G  G    R+   GT
Sbjct: 567 --SRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAGT 624

Query: 257 AA---------GRVRADPDDASLSTDKPQRGTGGPLG----PAAAGAGTEAAAAHEEGSK 303
            A         G+  A   + + +T    RG+GG       PAAAG+ + AAAA  + ++
Sbjct: 625 GAKSRKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAAGSESSAAAAVGQEAE 684

Query: 304 A------------GDSGAEPR-GLAP---HGPHPSCGERRPGGRWQQRRRSHEGRARGRH 347
           A            GD G     G+ P    G  P  G+ R GG  + R     G A+ R 
Sbjct: 685 ARKKPRRRRAKSRGDGGQNAAVGINPWQRRGKKPRLGKSRGGGGAKSR---GSGGAKSRG 741

Query: 348 RVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQR 393
              A +      AA++  G    + RR     +RS  +AV A GQ+
Sbjct: 742 SGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQK 787



 Score = 38.5 bits (88), Expect = 0.012
 Identities = 56/213 (26%), Positives = 81/213 (38%), Gaps = 29/213 (13%)

Query: 203 GAGGERNREPGVLLCFSAAPPDMVGSLERGERARI----RERKGREGPSRPRRGLQGTAA 258
           G GG++ R  G     +AA     G   + + A +    R+++ R G  +PRR     A 
Sbjct: 319 GRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRG-KKPRRQKASAAG 377

Query: 259 GRVRADPDDASLSTDKPQRGTGGPL----GPAAAGAGTEAAAAHEEGSKAGDSGAEPRGL 314
            + R   D   L   K +RG G        P        AA     GSK      +PR  
Sbjct: 378 AKSRGGGDKKGLREAK-RRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSK------KPRRR 430

Query: 315 APHGPHPSCGERRPGGRWQQRRRSHEGR---------ARGRHRVEADAADAAPTAAARRA 365
            P       G+ R GG  + RRR  + R         +RG  +     A AA T  +R  
Sbjct: 431 GPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQKASAAGT-KSRGG 489

Query: 366 GRARPRGRRHREHGTRSDA---RAVAAPGQRRG 395
           G     G+     G +++A   +A AA  + RG
Sbjct: 490 GLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRG 522



 Score = 35.0 bits (79), Expect = 0.13
 Identities = 73/334 (21%), Positives = 111/334 (33%), Gaps = 60/334 (17%)

Query: 84  AAAAGGCWATWEVAVAVTVSSR-WGSGGALCGTAAGMLGWGRERGRPGSSSAVALESQMT 142
           AAA G     W    +    S+  G+G      AAG+   G E+  P  ++A   +S+  
Sbjct: 130 AAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEK--PQKAAAAGAKSRSG 187

Query: 143 LRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTASAAAAPSFSPTEESELEPFLGA 202
            + ++R        A  R       R+R   S    T          P            
Sbjct: 188 KKPRRR-------GAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKP---------- 230

Query: 203 GAGGERNREPGVLLCFSAAPPDMVGSLERGERA----RIRERKGREGPSRPRRGLQGTAA 258
            AGG ++R  G         P       RG++A    + R  K R G  +  R  QG  A
Sbjct: 231 AAGGAKSRRGG------GKKPQK--QRRRGQKAATGGKSRVGKSRGGGDKKLRR-QGQNA 281

Query: 259 GRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHG 318
               A    A+ + +KP     G  GP + G          +  + G  G +PR      
Sbjct: 282 ALAGAKRRGAATAGEKPAAKGRGGRGPKSLGG---------QNPRWGRGGKKPRRRGQKA 332

Query: 319 PHPSCGERRPGGRWQQR--------RRSHEGRARGRHRVEADAADAAP----------TA 360
              +    + GG  QQ+        R+    R +   R +A AA A             A
Sbjct: 333 TKAAAAGTKRGGGGQQKAAVVGVKSRKKQRRRGKKPRRQKASAAGAKSRGGGDKKGLREA 392

Query: 361 AARRAGRARPRGRRHREHGTRSDARAVAAPGQRR 394
             R  GR +PR +  R    ++ A      G ++
Sbjct: 393 KRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKK 426



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 25/195 (12%)

Query: 205 GGERNREPGVLLCFSAAPPDMVGSLERGERARIRER-------------KGREGPSRPRR 251
           GG++ R  G      AA     G+  RG++ + R++             K   G +  RR
Sbjct: 446 GGKKPRRRGQKARQKAAE---AGAESRGDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRR 502

Query: 252 GLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAA-HEEGSKAGDSGAE 310
           G +  AAG         S    +P+R       PA AGA +    +   +  KA  +GA 
Sbjct: 503 GQKAEAAGEKATAAGAKSRGRKQPRRQK-----PAVAGAKSRVGGSKSRQRQKAVAAGAT 557

Query: 311 PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARP 370
             G   +      G  +P  +W Q   + + R  G  +     A A  T +  R+G    
Sbjct: 558 SHGGGGNKQSRGGGGNKP-RQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKS--RSGDGGK 614

Query: 371 RGRRHREHGTRSDAR 385
           +  R +  GT + +R
Sbjct: 615 KAWRQKAAGTGAKSR 629



 Score = 29.6 bits (65), Expect = 5.5
 Identities = 53/203 (26%), Positives = 70/203 (34%), Gaps = 42/203 (20%)

Query: 99  AVTVSSRWGSGGALCGTAAGMLGWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAA 158
           A      W +G    G+      W +       SSA A   Q    RKK           
Sbjct: 640 AAAAEKAWATGATSRGSGGKQPRWQKPAAAGSESSAAAAVGQEAEARKK----------- 688

Query: 159 PRLSLSIVWRRRLYSSVLPVTASAAAAPSFSPTEESELEPFLG--AGAGGERNREPGVLL 216
           PR       RRR  S          AA   +P +    +P LG   G GG ++R  G   
Sbjct: 689 PR-------RRRAKSR---GDGGQNAAVGINPWQRRGKKPRLGKSRGGGGAKSRGSG--- 735

Query: 217 CFSAAPPDMVGSLER-GERARIRERKG-------REGPSRPRRGLQGTAAGRVRADPDDA 268
              A      G+  R G++A   +  G       R G ++ R G +   AG  +A    A
Sbjct: 736 --GAKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQKA----A 789

Query: 269 SLSTDKPQR--GTGGPLGPAAAG 289
           +    KP R    GG    AAAG
Sbjct: 790 AAGGKKPPRVKSRGGRGQKAAAG 812


>gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens]
          Length = 1512

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 54/215 (25%), Positives = 76/215 (35%), Gaps = 27/215 (12%)

Query: 217 CFSAAPPDMVGSLERGERARIRERKGREGPS--------------RPRRGLQGTAAGRVR 262
           CFS  PP  V  L RG+R     +K R GP               +P++   G A+    
Sbjct: 80  CFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGG 139

Query: 263 ADP----DDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHG 318
             P    +D S  +++     G     AA  AG    +    GS A  SG + RG     
Sbjct: 140 VTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGSG---GSPASSSGTQRRGEGSER 196

Query: 319 PHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREH 378
             P    R   GR ++R R H  R   R   EA  + +  + +          G      
Sbjct: 197 -RPRRDRRSSSGRSKERHREHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSG 255

Query: 379 GTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHS 413
           G R  A A ++    R D +     S  H+ R  S
Sbjct: 256 GRRKSASATSSSSSSRKDRD-----SKAHRSRTKS 285


>gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens]
          Length = 1452

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 54/215 (25%), Positives = 76/215 (35%), Gaps = 27/215 (12%)

Query: 217 CFSAAPPDMVGSLERGERARIRERKGREGPS--------------RPRRGLQGTAAGRVR 262
           CFS  PP  V  L RG+R     +K R GP               +P++   G A+    
Sbjct: 80  CFSPGPPLEVKRLARGKRRAGGRQKRRRGPRAGQEAEKRRVFSLPQPQQDGGGGASSGGG 139

Query: 263 ADP----DDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHG 318
             P    +D S  +++     G     AA  AG    +    GS A  SG + RG     
Sbjct: 140 VTPLVEYEDVSSQSEQGLLLGGASAATAATAAGGTGGSG---GSPASSSGTQRRGEGSER 196

Query: 319 PHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREH 378
             P    R   GR ++R R H  R   R   EA  + +  + +          G      
Sbjct: 197 -RPRRDRRSSSGRSKERHREHRRRDGQRGGSEASKSRSRHSHSGEERAEVAKSGSSSSSG 255

Query: 379 GTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHS 413
           G R  A A ++    R D +     S  H+ R  S
Sbjct: 256 GRRKSASATSSSSSSRKDRD-----SKAHRSRTKS 285


>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
          Length = 417

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 69/281 (24%), Positives = 100/281 (35%), Gaps = 45/281 (16%)

Query: 128 RPGSSSAVALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTASAAAAPS 187
           R GS S+ + + Q    R++        AAAP         R   ++  PV  S+     
Sbjct: 50  RRGSGSSPSADQQGAQDREEEA------AAAPAADQQRAQDREEEAAAAPVPTSSGHRTE 103

Query: 188 FSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGPS 247
                + + +P   AG  G+R          S+   D        +RA+ RE +    P 
Sbjct: 104 KRKRLQLQCQP---AGGTGQRRGSR------SSPSADQ-------QRAQDREEEAAAAPV 147

Query: 248 RPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDS 307
              RG +     R R  P        +P  GTG   G  ++ +  +  A   E   A   
Sbjct: 148 PTSRGHR--TEKRKRQQPQR------RPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAP 199

Query: 308 GAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEG----RARGRHRVEADAADAAPTAAAR 363
               RG       P   + RP G   QRR S       + R + R E  AA  APT+   
Sbjct: 200 APTSRGHRTEKRKPQQPQCRPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPAPTSRGH 259

Query: 364 RAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSS 404
           R  + +P+  + R  G           GQRRG    Y PS+
Sbjct: 260 RTEKRKPQQPQRRPAG---------GTGQRRG--SGYSPSA 289



 Score = 37.0 bits (84), Expect = 0.035
 Identities = 38/148 (25%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 274 KPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQ 333
           +P  GTG   G  ++ +  +  A   E   A       RG       P   +RRP G   
Sbjct: 219 RPAGGTGQRRGSRSSPSADQQRAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTG 278

Query: 334 QRRRS----HEGRARGRHRVEADAADAAPTAAARRAGR-------ARPRG--RRHREHGT 380
           QRR S       +   + R E  AA  APT++  R  +        +P G   + R  G 
Sbjct: 279 QRRGSGYSPSADQQGAQDREEEAAAAPAPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSGC 338

Query: 381 RSDARAVAAPGQRRGDTEDYLPSSSPHQ 408
            S A    A  +        +P+SS H+
Sbjct: 339 SSSANQQGAQDREEEAAAAPVPTSSGHR 366


>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
           sapiens]
          Length = 355

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 57/187 (30%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 232 GERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAG 291
           G  AR R R+G     RP  G   T A +              P  GT G    A  G+ 
Sbjct: 180 GRSARARTRRGPHRTRRPEPGPHHTGARQA------------GPLPGTRGRTRAAGTGSA 227

Query: 292 TEAAAAH-EEGSKAGDSGAEPRGLAPHGP----HPSCGERRPGGRWQQRRRSHEGRARGR 346
               A H   GS A  + A   GL+P G      P     RP  R+   R +    AR R
Sbjct: 228 ARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287

Query: 347 HRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYL----- 401
            RV  + +    +  A+RA R  P   R R  G R  ARA   PG   G     L     
Sbjct: 288 CRVNWNQSSRPASHNAQRAARHIP--SRPRASGLR--ARAARRPGLDPGPAPYPLTPAAL 343

Query: 402 -PSSSPH 407
            P +SPH
Sbjct: 344 RPGTSPH 350


>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
           sapiens]
          Length = 355

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 57/187 (30%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 232 GERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAG 291
           G  AR R R+G     RP  G   T A +              P  GT G    A  G+ 
Sbjct: 180 GRSARARTRRGPHRTRRPEPGPHHTGARQA------------GPLPGTRGRTRAAGTGSA 227

Query: 292 TEAAAAH-EEGSKAGDSGAEPRGLAPHGP----HPSCGERRPGGRWQQRRRSHEGRARGR 346
               A H   GS A  + A   GL+P G      P     RP  R+   R +    AR R
Sbjct: 228 ARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287

Query: 347 HRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYL----- 401
            RV  + +    +  A+RA R  P   R R  G R  ARA   PG   G     L     
Sbjct: 288 CRVNWNQSSRPASHNAQRAARHIP--SRPRASGLR--ARAARRPGLDPGPAPYPLTPAAL 343

Query: 402 -PSSSPH 407
            P +SPH
Sbjct: 344 RPGTSPH 350


>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
           sapiens]
          Length = 355

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 57/187 (30%), Positives = 69/187 (36%), Gaps = 27/187 (14%)

Query: 232 GERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAG 291
           G  AR R R+G     RP  G   T A +              P  GT G    A  G+ 
Sbjct: 180 GRSARARTRRGPHRTRRPEPGPHHTGARQA------------GPLPGTRGRTRAAGTGSA 227

Query: 292 TEAAAAH-EEGSKAGDSGAEPRGLAPHGP----HPSCGERRPGGRWQQRRRSHEGRARGR 346
               A H   GS A  + A   GL+P G      P     RP  R+   R +    AR R
Sbjct: 228 ARGPARHLRGGSVAAAAAARCLGLSPPGRSRLFSPRSSLARPPLRFPPARPALSPSARRR 287

Query: 347 HRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYL----- 401
            RV  + +    +  A+RA R  P   R R  G R  ARA   PG   G     L     
Sbjct: 288 CRVNWNQSSRPASHNAQRAARHIP--SRPRASGLR--ARAARRPGLDPGPAPYPLTPAAL 343

Query: 402 -PSSSPH 407
            P +SPH
Sbjct: 344 RPGTSPH 350


>gi|239757439 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 243

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 60/208 (28%), Positives = 75/208 (36%), Gaps = 39/208 (18%)

Query: 209 NREPGVLLCFSAAPPDMVGSLE-RGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDD 267
           N  PG LL F   P    G  E R  R R R   GRE P++P          R RA  D 
Sbjct: 46  NIHPG-LLSFHLQPETREGKREGRSRRLRSRRGAGREEPAKP------PPRNRPRAAVDA 98

Query: 268 ASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPH---------- 317
           A+L+   P     G     AA A  E+     +  +   S        PH          
Sbjct: 99  ATLTPPAPSAVRSGR--SLAACARVESWHFLPQSWRTAPSAGIAASCLPHPGQPFIEPPL 156

Query: 318 --GPHPS----CGER------RPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA 365
             GPHP+     G+       R GG W +RR S     RG      +   A PT   RR+
Sbjct: 157 PIGPHPATLPVAGQSGRGWPSRGGGHWAERRVSTSANGRGE-----ELRGAPPTLGPRRS 211

Query: 366 GRARPRGRRHREHGTRSDARAVAAPGQR 393
            ++  R R     G +   R  A PG R
Sbjct: 212 QQSLTRIRLCL--GGKQKVRVPATPGLR 237


>gi|239751956 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 243

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 60/208 (28%), Positives = 75/208 (36%), Gaps = 39/208 (18%)

Query: 209 NREPGVLLCFSAAPPDMVGSLE-RGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDD 267
           N  PG LL F   P    G  E R  R R R   GRE P++P          R RA  D 
Sbjct: 46  NIHPG-LLSFHLQPETREGKREGRSRRLRSRRGAGREEPAKP------PPRNRPRAAVDA 98

Query: 268 ASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPH---------- 317
           A+L+   P     G     AA A  E+     +  +   S        PH          
Sbjct: 99  ATLTPPAPSAVRSGR--SLAACARVESWHFLPQSWRTAPSAGIAASCLPHPGQPFIEPPL 156

Query: 318 --GPHPS----CGER------RPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA 365
             GPHP+     G+       R GG W +RR S     RG      +   A PT   RR+
Sbjct: 157 PIGPHPATLPVAGQSGRGWPSRGGGHWAERRVSTSANGRGE-----ELRGAPPTLGPRRS 211

Query: 366 GRARPRGRRHREHGTRSDARAVAAPGQR 393
            ++  R R     G +   R  A PG R
Sbjct: 212 QQSLTRIRLCL--GGKQKVRVPATPGLR 237


>gi|239746439 PREDICTED: hypothetical protein XP_002344222 [Homo
           sapiens]
          Length = 243

 Score = 46.2 bits (108), Expect = 6e-05
 Identities = 60/208 (28%), Positives = 75/208 (36%), Gaps = 39/208 (18%)

Query: 209 NREPGVLLCFSAAPPDMVGSLE-RGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDD 267
           N  PG LL F   P    G  E R  R R R   GRE P++P          R RA  D 
Sbjct: 46  NIHPG-LLSFHLQPETREGKREGRSRRLRSRRGAGREEPAKP------PPRNRPRAAVDA 98

Query: 268 ASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPH---------- 317
           A+L+   P     G     AA A  E+     +  +   S        PH          
Sbjct: 99  ATLTPPAPSAVRSGR--SLAACARVESWHFLPQSWRTAPSAGIAASCLPHPGQPFIEPPL 156

Query: 318 --GPHPS----CGER------RPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRA 365
             GPHP+     G+       R GG W +RR S     RG      +   A PT   RR+
Sbjct: 157 PIGPHPATLPVAGQSGRGWPSRGGGHWAERRVSTSANGRGE-----ELRGAPPTLGPRRS 211

Query: 366 GRARPRGRRHREHGTRSDARAVAAPGQR 393
            ++  R R     G +   R  A PG R
Sbjct: 212 QQSLTRIRLCL--GGKQKVRVPATPGLR 237


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 14/128 (10%)

Query: 268 ASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERR 327
           + ++T KP      P  P     G  A+A     S +  S A     +      S   RR
Sbjct: 349 SGVTTGKPP----APPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRR 404

Query: 328 PGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAV 387
            GG ++           GRH      + +   + +RR  R+R RGRRH   G+R   R  
Sbjct: 405 GGGYYRS----------GRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYS 454

Query: 388 AAPGQRRG 395
            +P +R G
Sbjct: 455 RSPARRGG 462


>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
           sapiens]
          Length = 306

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 35/126 (27%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 274 KPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQ 333
           +P  GTG   G  ++ +  +  A   E   A       RG       P   +RRP G   
Sbjct: 42  QPAGGTGQRRGSGSSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQRRPAGGTG 101

Query: 334 QRRRSHEGRAR----GRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAA 389
           QRR S    +      + R E  AA  APT++  R  + +P+         +   R  A 
Sbjct: 102 QRRGSRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQ---------QPQCRPAAG 152

Query: 390 PGQRRG 395
            GQRRG
Sbjct: 153 TGQRRG 158



 Score = 40.0 bits (92), Expect = 0.004
 Identities = 58/240 (24%), Positives = 90/240 (37%), Gaps = 33/240 (13%)

Query: 180 ASAAAAPSFSP--TEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERA-- 235
           A+AA AP+     TE+ + +      AGG   R        S++  D  G+ +R E A  
Sbjct: 71  AAAAPAPTSRGHRTEKRKPQQPQRRPAGGTGQRRGSR----SSSSADQQGAQDREEEAAA 126

Query: 236 ---------RIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPA 286
                    R  +RK ++   RP  G  G   G   +   D   + D+ +  T  P+ P 
Sbjct: 127 APAPTSSGHRTEKRKPQQPQCRPAAGT-GQRRGSGCSPSADQQRAQDREEEATAAPV-PT 184

Query: 287 AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGR 346
           ++G  TE     +   +      + RG        S   R+P G   QRR S    +  +
Sbjct: 185 SSGHRTEKRKRLQLQCQPAGGTGQRRGSR------SSPSRQPAGGTGQRRGSRSSPSADQ 238

Query: 347 HRVEADAADAAPTAAARRAGRARPRGRRHREHGT-RSDARAVAAPGQRRGDTEDYLPSSS 405
            R +    +AA         + RP G   +  GT  +        GQRRG      P+S+
Sbjct: 239 QRAQDREEEAAQP-------QRRPAGGTGQRRGTAAAPVPTTGGTGQRRGTAAAPAPTST 291



 Score = 34.3 bits (77), Expect = 0.22
 Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 15/158 (9%)

Query: 274 KPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQ 333
           +P  GTG   G  ++ +  +  A   E   A        G       P   + RP     
Sbjct: 95  RPAGGTGQRRGSRSSSSADQQGAQDREEEAAAAPAPTSSGHRTEKRKPQQPQCRPAAGTG 154

Query: 334 QRRRS----HEGRARGRHRVEADAADAAPTAAARRAGR-------ARPRGRRHREHGTRS 382
           QRR S       + R + R E   A   PT++  R  +        +P G   +  G+RS
Sbjct: 155 QRRGSGCSPSADQQRAQDREEEATAAPVPTSSGHRTEKRKRLQLQCQPAGGTGQRRGSRS 214

Query: 383 --DARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAE 418
               +     GQRRG      PS+   + +   +  A+
Sbjct: 215 SPSRQPAGGTGQRRGSRSS--PSADQQRAQDREEEAAQ 250


>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
          Length = 653

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 50/191 (26%), Positives = 64/191 (33%), Gaps = 13/191 (6%)

Query: 230 ERGERARIRERKGREGPSRPRR-GLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAA 288
           +R   +R     G  G   P+R G  G  +G     P  A    DKP   +      AAA
Sbjct: 292 QRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAA 351

Query: 289 GAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHR 348
            A T  A   E  S      ++ RG    G     G RR   R ++RRRS    +  R R
Sbjct: 352 AAPTPPARGKESPSPRSAPSSQGRGGRAAG---GAGRRRR--RRRRRRRSRSSASAPRRR 406

Query: 349 VEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGDTEDYLPSSSPHQ 408
                  A P  ++R   RA       R        R    PG   G    +       +
Sbjct: 407 GRRRPRPAPPRGSSRSLSRA-------RSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAK 459

Query: 409 LRPHSQLPAET 419
            RP    PA T
Sbjct: 460 ERPPRARPAST 470



 Score = 37.7 bits (86), Expect = 0.020
 Identities = 52/201 (25%), Positives = 74/201 (36%), Gaps = 40/201 (19%)

Query: 230 ERGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAG 289
           +R +    R+R+ R   S+ +R  +     R    P   S      +  +G    P+ + 
Sbjct: 212 DRSDSGSRRKRRHRSRSSKCKRKEKNKEKKR----PHTESPGRRSHRHSSGSSHSPSLSS 267

Query: 290 AGTEAAAAHEEGSKAGDSGAEP---RGLAPHGPHPSCGE-----RRPGGRWQQRRRSHEG 341
             +++ +      K  D G +    R      P PS G      +R GG  Q R  +H G
Sbjct: 268 HYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQ-RSGAHGG 326

Query: 342 RARGRH-----------RVEADAADAAPTAAAR---------------RAGRARP-RGRR 374
           R    H           RV   AA AAPT  AR               R GRA    GRR
Sbjct: 327 RPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRR 386

Query: 375 HREHGTRSDARAVAAPGQRRG 395
            R    R  +R+ A+  +RRG
Sbjct: 387 RRRRRRRRRSRSSASAPRRRG 407


>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 480

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 80/292 (27%), Positives = 108/292 (36%), Gaps = 41/292 (14%)

Query: 124 RERGRPGSSSAVALESQ---MTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTA 180
           + RG    +S +  ++Q   + LR K  C++++ +   P  +L    +R ++    PV  
Sbjct: 119 KNRGPSAGTSQLGKKTQCRSLFLRTKGLCALLLELPPRPPPNLQEGGQRAIFQRP-PVYL 177

Query: 181 SAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRER 240
                P   P +E         G+ G R +    L   +AAP    G       AR+RE 
Sbjct: 178 GNKPTP---PRQE---------GSFGGRPKSQPPLPQETAAPAPQPGPT--APPARVREP 223

Query: 241 KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEE 300
              EG SR  R L+  AA R    P   +LS     R  G P GP   G G +AAA    
Sbjct: 224 GRAEGASREPR-LRSRAA-RPPPAPGPGALSRASRSRAAGRP-GPGFHG-GEKAAAPRAP 279

Query: 301 GSKAG-DSGAEPRGLAPHGPHPSC-------------GERRPGGRWQQRRRSHEG---RA 343
           G   G + GA  R   P                    G+    G  Q    S  G   R 
Sbjct: 280 GGGGGRNPGALGRAAPPSRARQDAWGLSGCATVGLRRGDCDRAGSSQPPATSGNGERCRF 339

Query: 344 RGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRG 395
             R R      +   T A    G A P GRRH E    +  RA +  G RRG
Sbjct: 340 CRRRRRRGGGGEGEGTHATH--GPASPPGRRHDEEVGAAVLRAGSGEGSRRG 389


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 57/216 (26%), Positives = 73/216 (33%), Gaps = 19/216 (8%)

Query: 177  PVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSL----ERG 232
            P+       P     E  ++ P    G  G R  +          PP  VGS+    E+G
Sbjct: 1208 PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG 1267

Query: 233  ERARIRER--KGREGPSRPR--RGLQGTAAGRVRADPDDASLST-DKPQRGTGGPLG-PA 286
            E          G  G   P+  RG +G A     A P  A     D   +G  GP+G P 
Sbjct: 1268 EPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPG 1327

Query: 287  AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSC--------GERRPGGRWQQRRRS 338
              G   E   A ++G   GD G +     P  P PS         G+R P G      R 
Sbjct: 1328 DPGPPGEPGPAGQDGV-GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1386

Query: 339  HEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR 374
             E  A+G    E       P      AG+  P G R
Sbjct: 1387 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLR 1422


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 57/216 (26%), Positives = 73/216 (33%), Gaps = 19/216 (8%)

Query: 177  PVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSL----ERG 232
            P+       P     E  ++ P    G  G R  +          PP  VGS+    E+G
Sbjct: 1157 PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG 1216

Query: 233  ERARIRER--KGREGPSRPR--RGLQGTAAGRVRADPDDASLST-DKPQRGTGGPLG-PA 286
            E          G  G   P+  RG +G A     A P  A     D   +G  GP+G P 
Sbjct: 1217 EPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPG 1276

Query: 287  AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSC--------GERRPGGRWQQRRRS 338
              G   E   A ++G   GD G +     P  P PS         G+R P G      R 
Sbjct: 1277 DPGPPGEPGPAGQDGV-GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1335

Query: 339  HEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR 374
             E  A+G    E       P      AG+  P G R
Sbjct: 1336 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLR 1371


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 57/216 (26%), Positives = 73/216 (33%), Gaps = 19/216 (8%)

Query: 177  PVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSL----ERG 232
            P+       P     E  ++ P    G  G R  +          PP  VGS+    E+G
Sbjct: 1196 PIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKG 1255

Query: 233  ERARIRER--KGREGPSRPR--RGLQGTAAGRVRADPDDASLST-DKPQRGTGGPLG-PA 286
            E          G  G   P+  RG +G A     A P  A     D   +G  GP+G P 
Sbjct: 1256 EPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPG 1315

Query: 287  AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSC--------GERRPGGRWQQRRRS 338
              G   E   A ++G   GD G +     P  P PS         G+R P G      R 
Sbjct: 1316 DPGPPGEPGPAGQDGV-GGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQ 1374

Query: 339  HEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR 374
             E  A+G    E       P      AG+  P G R
Sbjct: 1375 GEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLR 1410


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 58/241 (24%), Positives = 82/241 (34%), Gaps = 26/241 (10%)

Query: 128 RPGSSSAV-ALESQMTLRRKKRCSVVVVVAAAPRLSLSIVWRRRLYSSVLPVTASAAAAP 186
           RP S S +  L+      R++RC ++  VA A     +            P   + AA+ 
Sbjct: 444 RPTSFSVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASA----------PCAPAPAASG 493

Query: 187 SFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGP 246
                EE E     GAG  G    EP      +A  P   G  E  +        G   P
Sbjct: 494 RPPRAEELERRALAGAGGVGAAGAEPP-----NAGDPFKAGEAETNDTNGYSSGGGGHSP 548

Query: 247 SRPRRGLQGTAAGRVRADPDDASLSTDKPQ-----RGTGGPLGPAAAGAGTEAAAAHEEG 301
           S       G        D +D +  T+  +     RG GG LG   +G    A      G
Sbjct: 549 SAD----SGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGARGSGCQGAAETDASPG 604

Query: 302 SKAGDSGAE-PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
           +   ++ A  PR  +P  P P  G   PGG     + +       R R  +D+    P  
Sbjct: 605 ATVDEAAAPGPRENSPVAPGPPGGAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRR 664

Query: 361 A 361
           A
Sbjct: 665 A 665


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 50/171 (29%), Positives = 65/171 (38%), Gaps = 20/171 (11%)

Query: 230  ERGERARIRER--KGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLG-PA 286
            ERGER    ER  +GR+GP     GL GT        P    +S D+P  G  G  G P 
Sbjct: 2059 ERGERGEKGERGEQGRDGPP----GLPGTPGP---PGPPGPKVSVDEPGPGLSGEQGPPG 2111

Query: 287  AAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGGRWQQRRRSHEGR---- 342
              GA  E  +  ++G K GD G          P P   +  PG   ++     EG+    
Sbjct: 2112 LKGAKGEPGSNGDQGPK-GDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQ 2170

Query: 343  -ARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQ 392
              RG         D  P  A   AG A P+G      G + +      PG+
Sbjct: 2171 GPRGPPGPVGGHGDPGPPGAPGLAGPAGPQG----PSGLKGEPGETGPPGR 2217



 Score = 36.6 bits (83), Expect = 0.045
 Identities = 34/106 (32%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 223  PDMVGSLERGERARIRERKGREGPSRPR--RGLQGTAAGRVRADPDDASLSTDKPQRGTG 280
            P   G +  GE   +  RKG  GPS P   RG  G    R        ++  DK  RG  
Sbjct: 1349 PGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGER 1408

Query: 281  GPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGER 326
            GP GP   G      A  E G         P+G  P GP    GE+
Sbjct: 1409 GPPGPGEGG-----IAPGEPGLPGLPGSPGPQG--PVGPPGKKGEK 1447



 Score = 36.2 bits (82), Expect = 0.059
 Identities = 43/179 (24%), Positives = 57/179 (31%), Gaps = 14/179 (7%)

Query: 222  PPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGG 281
            PP + G+  +G++      +G  GP  P  G  G A G    +P    L      +G  G
Sbjct: 1390 PPGLPGTAMKGDKGD----RGERGPPGPGEG--GIAPG----EPGLPGLPGSPGPQGPVG 1439

Query: 282  PLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRG----LAPHGPHPSCGERRPGGRWQQRRR 337
            P G       +E  A    G         PRG    + P G     G     G   +R  
Sbjct: 1440 PPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGP 1499

Query: 338  SHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAPGQRRGD 396
                 +RG   V        P       GR   +G   R         AVA P   +GD
Sbjct: 1500 PGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGD 1558



 Score = 31.2 bits (69), Expect = 1.9
 Identities = 55/225 (24%), Positives = 71/225 (31%), Gaps = 40/225 (17%)

Query: 211  EPGVLLCFSAAPPDMVGSL----------ERGERA--RIRERKGREGPSRPRRGLQGTAA 258
            EPG  L     PP + G+            +G+R    I+  +G  GP R + G  G   
Sbjct: 2098 EPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGP-RGQDGNPGLPG 2156

Query: 259  GRVRADPD-----DASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKA--GDSGAEP 311
             R  A P+             P  G G P  P A G    A      G K   G++G   
Sbjct: 2157 ERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPG 2216

Query: 312  RGL----------APHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAA 361
            RGL           P GP    G +   G   Q   + +  A GR        D      
Sbjct: 2217 RGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDRGSPGV 2276

Query: 362  ARRAGRARPRGRRHREHGTRSDARAV----------AAPGQRRGD 396
                G   P G +     T +  +AV           APG   GD
Sbjct: 2277 PGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGD 2321


>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 465

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 46/180 (25%), Positives = 68/180 (37%), Gaps = 24/180 (13%)

Query: 227 GSLERGERARIRERKGR--EGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRGTGGPLG 284
           G   R ++A +   K R  EG    RRG +   AG         SL   K +RG  G  G
Sbjct: 149 GKQPRRQKAAVAGAKSRGGEGKKPQRRGQKAATAGAKSRGGGVRSLGGKKMRRGQKGAAG 208

Query: 285 PAAAGAGTEAAAAHEEGSKAGDSGAE-PRGLAPHGPHPSCGERRPGGRWQQRRRSHEGRA 343
               G G +     ++ SK+G    + P+  A  G            R + R+R  +  A
Sbjct: 209 AKRCGGGKQPRRRGQKASKSGGVRCQTPQKAAAQGVK---------SRKKLRQRGQKAAA 259

Query: 344 RGRHRVEADAADAAPTAAARRAG---------RARPRGRRHREHGTRSDARAVAAPGQRR 394
            G+   EA A         +  G          +R RG++    G +   +A AA G+RR
Sbjct: 260 AGQ---EAAAGKTCGGGGEKHRGGGDKKPLRKNSRWRGQKAAAAGGKKPQKAAAAGGERR 316


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 60/214 (28%), Positives = 77/214 (35%), Gaps = 35/214 (16%)

Query: 211 EPGVLLCFSAAPPDMVGSLERGER--ARIRERKGREGP-------SRPRRGLQGTAAGRV 261
           EPGV+     A P     L  GER  A I   KG +G          P R     A G V
Sbjct: 623 EPGVVGAVGTAGPSGPSGLP-GERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAV 681

Query: 262 RADPDDASLSTDKPQRGTGGPLGPAAA----------------GAGTEAAAAHEEGSKAG 305
            A P  A  + D+ + G  GP GPA                  G    A AA + G+K G
Sbjct: 682 GA-PGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAK-G 739

Query: 306 DSGAE-PRG----LAPHGPHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTA 360
           + GA+ P+G    + P GP  + G   P G         +G   G       A    P  
Sbjct: 740 ERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPG 799

Query: 361 AARRAGRARPRGRRHRE--HGTRSDARAVAAPGQ 392
            +  +G   P G   +E   G R D   V   G+
Sbjct: 800 PSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGE 833


>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
          Length = 540

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 80/310 (25%), Positives = 108/310 (34%), Gaps = 31/310 (10%)

Query: 107 GSGGALCGTAAGMLGWGRERGRPGSSSAVALESQMTLRRKKRCSVVVVVAAA--PRLSLS 164
           G G A  G AAG  G GR     GS +  AL   +++     C ++ V AAA   R++  
Sbjct: 9   GGGDAGKGNAAGGGGGGRSATTAGSRAVSALCLLLSVGSAAACLLLGVQAAALQGRVAAL 68

Query: 165 IVWRRRLYSSVLPVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPD 224
              R  L  +  P    A A P        +L+   G          P   +C    PP 
Sbjct: 69  EEERELLRRAGPPGALDAWAEPHLERLLREKLD---GLAKIRTAREAPSECVC-PPGPPG 124

Query: 225 MVGSLERGERARIRERKGREGPSRP-----RRGLQGTAAGRVRADPDDASLSTDKPQRGT 279
             G   R        + GR+G   P     + GL G      +  P D     D+ Q G 
Sbjct: 125 RRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKG--EKGAPGDFGPRGDQGQDGA 182

Query: 280 GGPLG-PAAAGAGTEAAAAHEEGSKAGDSGAEPRG-------LAPHGPHPSCGERR-PGG 330
            GP G P   GA        ++G +     A P+G       + P GP    GE   PG 
Sbjct: 183 AGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKGEPGVPGK 242

Query: 331 RWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGR-RHREHGTRSDARAVAA 389
           +      S  G    +     +     P       G   P+G   HR  GT   A    A
Sbjct: 243 KGDDGTPSQPGPPGPK----GEPGSMGPRGENGVDGAPGPKGEPGHR--GTDGAAGPRGA 296

Query: 390 PGQR--RGDT 397
           PG +  +GDT
Sbjct: 297 PGLKGEQGDT 306


>gi|50962882 G patch domain containing 8 [Homo sapiens]
          Length = 1502

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 52/223 (23%), Positives = 83/223 (37%), Gaps = 30/223 (13%)

Query: 219 SAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGRVRADPDDASLSTDKPQRG 278
           S+AP D     ERG +    E  G   P+ PRR  +     + R+ P +   S  K + G
Sbjct: 721 SSAPADS----ERGPKP---EPPGSGSPAPPRRRRRAQDDSQRRSLPAEEGSSGKKDEGG 773

Query: 279 TG------------GPLGPAA----AGAGTEAAAAHEEGSKAGDSGAEPRGLAP-HGPHP 321
            G            G L P++    AG    + ++H     +GD  ++       H   P
Sbjct: 774 GGSSSQDHGGRKHKGELPPSSCQRRAGTKRSSRSSHRSQPSSGDEDSDDASSHRLHQKSP 833

Query: 322 SC----GERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHRE 377
           S      E    G    R RS  GR    HR    +  ++  A++ ++  +R R      
Sbjct: 834 SQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDS 893

Query: 378 HGTRSDARAVAAPGQRRGDTEDYLPSSSPHQLRPHSQLPAETD 420
           +   SD     +      D  DY  +SS H+ + H    ++ D
Sbjct: 894 YSDYSDRSRRHSKRSHDSDDSDY--ASSKHRSKRHKYSSSDDD 934



 Score = 35.8 bits (81), Expect = 0.077
 Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 31/208 (14%)

Query: 212 PGVLLCFSAAPPDMVGS---------LERGERARIRERKGREGP----SRPRRGLQGTAA 258
           P  LL F+ A P +  S         L R + AR    KG E P    S  +  LQG   
Sbjct: 552 PSELLIFTKAEPSISYSCNPLYFDFKLSRNKDART---KGTEKPKDIGSSSKDHLQGLDP 608

Query: 259 GRVRADPDDASLSTDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHG 318
           G      +   +  +K  R +GG +   A+G+        E G   G S  E  G +   
Sbjct: 609 GEPNKSKE---VGGEKIVRSSGGRMDAPASGSACSGLNKQEPGGSHG-SETEDTGRS--- 661

Query: 319 PHPSCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREH 378
             PS  ER       ++++ H+  ++ + + +AD  + +  A +    + R + +R +  
Sbjct: 662 -LPSKKERSGKSHRHKKKKKHKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKRKKN- 719

Query: 379 GTRSDARAVAAPGQRRGDTEDYLPSSSP 406
                 ++ A     RG   +   S SP
Sbjct: 720 ------KSSAPADSERGPKPEPPGSGSP 741



 Score = 29.6 bits (65), Expect = 5.5
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 7/87 (8%)

Query: 322  SCGERRPGGRWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTR 381
            SC + R   R   R RS   R+RGR R    ++  + + + RR+        +     +R
Sbjct: 938  SCSQSRSRSRSHTRERS---RSRGRSR----SSSCSRSRSKRRSRSTTAHSWQRSRSYSR 990

Query: 382  SDARAVAAPGQRRGDTEDYLPSSSPHQ 408
              +R+  +P QR G  +      SP +
Sbjct: 991  DRSRSTRSPSQRSGSRKRSWGHESPEE 1017


>gi|239755920 PREDICTED: hypothetical protein XP_002344746 [Homo
           sapiens]
          Length = 600

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 51/186 (27%), Positives = 65/186 (34%), Gaps = 38/186 (20%)

Query: 201 GAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGR 260
           G GAGGER    G  + F               RAR+   +GR G       +QG    R
Sbjct: 250 GHGAGGERG---GAAVEF---------------RARVHCHRGRAGGQGGDFAVQGPRGRR 291

Query: 261 V--RADPDDASLSTDKPQRGTGGPLGPAAAGAGTE-AAAAHEEGSKAGDSGAEPRGLAPH 317
              +   +  +   D+ + G G    P A G   E   A H  G      G         
Sbjct: 292 HGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVAVHRAGGCRRGGGRR------- 344

Query: 318 GPHPSCGERRPGGRWQQRRRSHEGRARGRH----RVEADAADAAPTAAARRAGRARPRGR 373
                CG  R G R Q   R H G+A G       VE       P  + RR+GR   RG 
Sbjct: 345 -----CGHVRVGVREQASERGH-GQALGGQDVLLEVEGQGGRGRPGQSLRRSGRGHGRGI 398

Query: 374 RHREHG 379
           + R+ G
Sbjct: 399 QARDTG 404



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 298 HEEGSKAGDSGAEPRGLAPHGPHPS---CGERRPGGRW---QQRRRSHEGRARGRHRVEA 351
           H  G +A D+G  PR     G H S    GE  P G+    Q+ R   E     + R EA
Sbjct: 394 HGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLAGVQEERVPVEELLARQARGEA 453

Query: 352 DAADAAPTAAARRAGRARPRGRRHREHGTRSDARA 386
           +A   A      R GR R    R R  G  +  RA
Sbjct: 454 EARQGA--LGQVRGGRVRL--HRERREGLLARERA 484


>gi|239750438 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 510

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 51/186 (27%), Positives = 65/186 (34%), Gaps = 38/186 (20%)

Query: 201 GAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGR 260
           G GAGGER    G  + F               RAR+   +GR G       +QG    R
Sbjct: 107 GHGAGGERG---GAAVEF---------------RARVHCHRGRAGGQGGDFAVQGPRGRR 148

Query: 261 V--RADPDDASLSTDKPQRGTGGPLGPAAAGAGTE-AAAAHEEGSKAGDSGAEPRGLAPH 317
              +   +  +   D+ + G G    P A G   E   A H  G      G         
Sbjct: 149 HGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVAVHRAGGCRRGGGRR------- 201

Query: 318 GPHPSCGERRPGGRWQQRRRSHEGRARGRH----RVEADAADAAPTAAARRAGRARPRGR 373
                CG  R G R Q   R H G+A G       VE       P  + RR+GR   RG 
Sbjct: 202 -----CGHVRVGVREQASERGH-GQALGGQDVLLEVEGQGGRGRPGQSLRRSGRGHGRGI 255

Query: 374 RHREHG 379
           + R+ G
Sbjct: 256 QARDTG 261



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 298 HEEGSKAGDSGAEPRGLAPHGPHPS---CGERRPGGRW---QQRRRSHEGRARGRHRVEA 351
           H  G +A D+G  PR     G H S    GE  P G+    Q+ R   E     + R EA
Sbjct: 251 HGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLAGVQEERVPVEELLARQARGEA 310

Query: 352 DAADAAPTAAARRAGRARPRGRRHREHGTRSDARA 386
           +A   A      R GR R    R R  G  +  RA
Sbjct: 311 EARQGA--LGQVRGGRVRL--HRERREGLLARERA 341


>gi|239744740 PREDICTED: hypothetical protein XP_002343259 [Homo
           sapiens]
          Length = 457

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 51/186 (27%), Positives = 65/186 (34%), Gaps = 38/186 (20%)

Query: 201 GAGAGGERNREPGVLLCFSAAPPDMVGSLERGERARIRERKGREGPSRPRRGLQGTAAGR 260
           G GAGGER    G  + F               RAR+   +GR G       +QG    R
Sbjct: 107 GHGAGGERG---GAAVEF---------------RARVHCHRGRAGGQGGDFAVQGPRGRR 148

Query: 261 V--RADPDDASLSTDKPQRGTGGPLGPAAAGAGTE-AAAAHEEGSKAGDSGAEPRGLAPH 317
              +   +  +   D+ + G G    P A G   E   A H  G      G         
Sbjct: 149 HGGQGGGEQTAAVRDRHRDGVGAVAQPRAHGVQIEEGVAVHRAGGCRRGGGRR------- 201

Query: 318 GPHPSCGERRPGGRWQQRRRSHEGRARGRH----RVEADAADAAPTAAARRAGRARPRGR 373
                CG  R G R Q   R H G+A G       VE       P  + RR+GR   RG 
Sbjct: 202 -----CGHVRVGVREQASERGH-GQALGGQDVLLEVEGQGGRGRPGQSLRRSGRGHGRGI 255

Query: 374 RHREHG 379
           + R+ G
Sbjct: 256 QARDTG 261



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 31/95 (32%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 298 HEEGSKAGDSGAEPRGLAPHGPHPS---CGERRPGGRW---QQRRRSHEGRARGRHRVEA 351
           H  G +A D+G  PR     G H S    GE  P G+    Q+ R   E     + R EA
Sbjct: 251 HGRGIQARDTGGGPRNRGQEGTHASGRHAGEGAPHGKLAGVQEERVPVEELLARQARGEA 310

Query: 352 DAADAAPTAAARRAGRARPRGRRHREHGTRSDARA 386
           +A   A      R GR R    R R  G  +  RA
Sbjct: 311 EARQGA--LGQVRGGRVRL--HRERREGLLARERA 341


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 56/217 (25%), Positives = 75/217 (34%), Gaps = 21/217 (9%)

Query: 177  PVTASAAAAPSFSPTEESELEPFLGAGAGGERNREPGVLLCFSAAPPDMVGSL----ERG 232
            P+       PS    E  ++ P    G  G R             PP  VG+L    E+G
Sbjct: 1068 PIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKG 1127

Query: 233  ERAR-----IRERKGREGPSRPRRGLQGTAAGRVRADPDDASLST-DKPQRGTGGPLG-P 285
            E        I+   G +GP R  RG +G +       P      T D   +G  GP+G P
Sbjct: 1128 EPGESGSPGIQGEPGVKGP-RGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFP 1186

Query: 286  AAAGAGTEAAAAHEEGSKAGDSGAE--------PRGLAPHGPHPSCGERRPGGRWQQRRR 337
               G   E     ++G+K GD G +        P     +GP    G+R P G      R
Sbjct: 1187 GDPGPPGEGGPRGQDGAK-GDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGR 1245

Query: 338  SHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR 374
                 A+G            P   A  AG+  P G R
Sbjct: 1246 QGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLR 1282



 Score = 37.7 bits (86), Expect = 0.020
 Identities = 51/204 (25%), Positives = 67/204 (32%), Gaps = 39/204 (19%)

Query: 242  GREGPSRPR-----RGLQGTAAGR-------VRADPDDASLSTDKPQRGTGGPLGP---- 285
            G++GP+  R     RGL GTA G            P  A    ++   G+GGP+GP    
Sbjct: 890  GKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRP 949

Query: 286  ---AAAGAGTEAAAAHEEG--SKAGDSGAE-PRGL-APHGPHPSCGERRPGGRWQQRRRS 338
                  GA  E     E+G     G  G + P GL  P GP    GE    G      + 
Sbjct: 950  GPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQK 1009

Query: 339  HEGRARGRHRVEADAADAAPTAAARRAGRARPRGRR--------HREHGTRS-------- 382
                 +G H          P      AG     G R          + GTR         
Sbjct: 1010 GTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPI 1069

Query: 383  DARAVAAPGQRRGDTEDYLPSSSP 406
              + +  P   +G+T D  P   P
Sbjct: 1070 GLQGLPGPSGEKGETGDVGPMGPP 1093



 Score = 28.9 bits (63), Expect = 9.4
 Identities = 71/270 (26%), Positives = 86/270 (31%), Gaps = 45/270 (16%)

Query: 171 LYSSVLPVTASAAAAPSFSPTEESE---LEP-FLGAGAGGERNREPGVLLCFSAAPPDMV 226
           L SS+LP    AA  P     E+ E   LEP  L  G  G     P  L+     PP + 
Sbjct: 277 LESSLLPPLEEAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEG--PAGLI----GPPGIQ 330

Query: 227 GSL-------ERGE--RARIRERKGREGPSRP------RRGLQGTAAGRVRADPD-DASL 270
           G+        ERG   RA +    G  GP         R G  G   G V A  +  A  
Sbjct: 331 GNPGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQA 390

Query: 271 STDKPQRGTGGPLGPAAAGAGTEAAAAHEEGSKAGDSGAEPRGLAPHGPHPSCGERRPGG 330
              + +    GP GP                   G+SG     L P GP    G   P G
Sbjct: 391 ILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESG----DLGPQGPRGPQGLTGPPG 446

Query: 331 RWQQRRRSHEGRARGRHRVEADAADAAPTAAARRAGRARPRGRRHREHGTRSDARAVAAP 390
           +  +R R+    ARG         D          G          E G R D  A   P
Sbjct: 447 KAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPG----------EKGHRGDTGAQGLP 496

Query: 391 GQ-----RRGDTEDYLPSSSPHQLRPHSQL 415
           G       RGD  +  P   P +  P   L
Sbjct: 497 GPPGEDGERGDDGEIGPRGLPGESGPRGLL 526


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,468,282
Number of Sequences: 37866
Number of extensions: 1178593
Number of successful extensions: 6722
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 625
Number of HSP's that attempted gapping in prelim test: 5741
Number of HSP's gapped (non-prelim): 1434
length of query: 430
length of database: 18,247,518
effective HSP length: 105
effective length of query: 325
effective length of database: 14,271,588
effective search space: 4638266100
effective search space used: 4638266100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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