Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131381 Sequence: fasta or formatted (289aa) NCBI GI: 169203411
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {289aa} PREDICTED: hypothetical protein
alt prot {369aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         28           2
 C cysteine            2.8          8           2
 D aspartate           4.5         13           1
 E glutamate           4.5         13           2
 F phenylalanine       2.8          8           1
 G glycine             9.3         27           2
 H histidine           2.1          6           1
 I isoleucine          1.0          3           1
 K lysine              2.8          8           1
 L leucine            10.7         31           2
 M methionine          1.0          3           1
 N asparagine          3.1          9           1
 P proline             6.9         20           2
 Q glutamine           3.8         11           1
 R arginine           10.0         29           2
 S serine             11.8         34           2
 T threonine           3.1          9           2
 V valine              5.5         16           1
 W tryptophan          2.4          7           1
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131381          1.000   PREDICTED: hypothetical protein 
LOC100131381          0.667   PREDICTED: hypothetical protein 
TBKBP1                0.021   TBK1 binding protein 1 
RADIL                 0.019   Rap GTPase interactor 
MUC12                 0.014   PREDICTED: mucin 12, cell surface associated 
SYNJ2                 0.014   synaptojanin 2 
IRS2                  0.014   insulin receptor substrate 2 
PSRC1                 0.012   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.012   proline/serine-rich coiled-coil 1 isoform a 
LOC100292682          0.011   PREDICTED: hypothetical protein 
LOC100290022          0.011   PREDICTED: hypothetical protein XP_002346854 
LOC100286972          0.011   PREDICTED: hypothetical protein XP_002342692 
ZC3H18                0.011   zinc finger CCCH-type containing 18 
C10orf47              0.009   hypothetical protein LOC254427 
NRG2                  0.009   neuregulin 2 isoform 2 
NRG2                  0.009   neuregulin 2 isoform 4 
NRG2                  0.009   neuregulin 2 isoform 3 
NRG2                  0.009   neuregulin 2 isoform 1 
PTHLH                 0.007   parathyroid hormone-like hormone isoform 1 prepropro...
PTHLH                 0.007   parathyroid hormone-like hormone isoform 1 prepropro...
PTHLH                 0.007   parathyroid hormone-like hormone isoform 2 prepropro...
PTHLH                 0.007   parathyroid hormone-like hormone isoform 2 preproprot...
SIM2                  0.007   single-minded homolog 2 long isoform 
DMXL1                 0.007   Dmx-like 1 
LOC100291870          0.007   PREDICTED: hypothetical protein XP_002345664 
PLEC1                 0.007   plectin 1 isoform 11 
PLEC1                 0.007   plectin 1 isoform 10 
PLEC1                 0.007   plectin 1 isoform 8 
PLEC1                 0.007   plectin 1 isoform 7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press