Guide to the Human Genome
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Name: LOC100291870 Sequence: fasta or formatted (114aa) NCBI GI: 239753461
Description:

PREDICTED: hypothetical protein XP_002345664

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         12           2
 C cysteine            0.0          0           0
 D aspartate           2.6          3           1
 E glutamate           3.5          4           1
 F phenylalanine       0.9          1           1
 G glycine             6.1          7           1
 H histidine           2.6          3           1
 I isoleucine          1.8          2           1
 K lysine              3.5          4           1
 L leucine             5.3          6           1
 M methionine          1.8          2           1
 N asparagine          1.8          2           1
 P proline            10.5         12           2
 Q glutamine           3.5          4           1
 R arginine           16.7         19           4
 S serine             13.2         15           2
 T threonine           8.8         10           1
 V valine              6.1          7           2
 W tryptophan          0.9          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345664 
LOC100290741          0.054   PREDICTED: hypothetical protein XP_002346521 
LOC100288445          0.054   PREDICTED: hypothetical protein XP_002342359 
LOC100293980          0.049   PREDICTED: hypothetical protein 
SON                   0.034   SON DNA-binding protein isoform F 
SON                   0.034   SON DNA-binding protein isoform B 
SRRM2                 0.034   splicing coactivator subunit SRm300 
MDC1                  0.034   mediator of DNA-damage checkpoint 1 
LOC100132339          0.034   PREDICTED: hypothetical protein 
LOC100132339          0.034   PREDICTED: hypothetical protein 
LOC100132339          0.034   PREDICTED: hypothetical protein 
LOC100291624          0.034   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.034   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.034   PREDICTED: hypothetical protein XP_002342583 
SRRM1                 0.034   serine/arginine repetitive matrix 1 
NFKBIE                0.030   nuclear factor of kappa light polypeptide gene enhan...
CCDC86                0.030   coiled-coil domain containing 86 
NAP1L3                0.025   nucleosome assembly protein 1-like 3 
FNDC1                 0.025   fibronectin type III domain containing 1 
LOC100292703          0.025   PREDICTED: hypothetical protein 
LOC100131091          0.025   PREDICTED: hypothetical protein 
LOC100290100          0.025   PREDICTED: hypothetical protein XP_002347380 
FOXO6                 0.025   PREDICTED: forkhead box protein O6 
LOC100131091          0.025   PREDICTED: hypothetical protein 
LOC100289573          0.025   PREDICTED: hypothetical protein XP_002343218 
PHACTR2               0.025   phosphatase and actin regulator 2 isoform 4 
PHACTR2               0.025   phosphatase and actin regulator 2 isoform 2 
TTBK1                 0.025   tau tubulin kinase 1 
SCAF1                 0.025   SR-related CTD-associated factor 1 
SETD1B                0.025   SET domain containing 1B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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