Guide to the Human Genome
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Name: LOC100290022 Sequence: fasta or formatted (189aa) NCBI GI: 239748911
Description:

PREDICTED: hypothetical protein XP_002346854

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.2         25           3
 C cysteine            1.6          3           1
 D aspartate           1.1          2           1
 E glutamate           3.7          7           1
 F phenylalanine       3.2          6           1
 G glycine            13.2         25           2
 H histidine           1.1          2           1
 I isoleucine          0.0          0           0
 K lysine              2.6          5           1
 L leucine             7.9         15           2
 M methionine          0.5          1           1
 N asparagine          1.1          2           1
 P proline            11.6         22           2
 Q glutamine           2.6          5           1
 R arginine           13.2         25           3
 S serine              9.5         18           2
 T threonine           7.9         15           2
 V valine              4.2          8           1
 W tryptophan          1.6          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346854 
LOC100292682          1.000   PREDICTED: hypothetical protein 
LOC100286972          1.000   PREDICTED: hypothetical protein XP_002342692 
LOC401180             0.041   PREDICTED: similar to hCG1745223 
LOC401180             0.041   PREDICTED: similar to hCG1745223 
LOC401180             0.041   PREDICTED: similar to hCG1745223 
KLF16                 0.039   BTE-binding protein 4 
LOC100291131          0.033   PREDICTED: hypothetical protein XP_002346641 
GUCY1A2               0.033   guanylate cyclase 1, soluble, alpha 2 
TNRC18                0.033   trinucleotide repeat containing 18 
LOC100293404          0.033   PREDICTED: hypothetical protein 
ARHGAP17              0.033   nadrin isoform 1 
C12orf34              0.033   hypothetical protein LOC84915 
C19orf6               0.030   membralin isoform 1 
ABL2                  0.030   arg tyrosine kinase isoform c 
ABL2                  0.030   arg tyrosine kinase isoform b 
ABL2                  0.030   arg tyrosine kinase isoform d 
ABL2                  0.030   arg tyrosine kinase isoform a 
LOC100293577          0.028   PREDICTED: hypothetical protein 
LOC100128142          0.028   PREDICTED: hypothetical protein 
LOC100128142          0.028   PREDICTED: similar to RIKEN cDNA E130309D14 
LOC100134569          0.028   PREDICTED: hypothetical protein 
GGA3                  0.028   ADP-ribosylation factor binding protein 3 isoform sh...
GGA3                  0.028   ADP-ribosylation factor binding protein 3 isoform lo...
LOC100291356          0.028   PREDICTED: hypothetical protein XP_002347017 
LOC100286907          0.028   PREDICTED: hypothetical protein XP_002342878 
MUC4                  0.028   mucin 4 isoform a 
TAF6L                 0.028   TAF6-like RNA polymerase II 
MAPK8IP2              0.028   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.028   mitogen-activated protein kinase 8 interacting protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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