Guide to the Human Genome
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Name: LOC100131381 Sequence: fasta or formatted (369aa) NCBI GI: 239755517
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {289aa} PREDICTED: hypothetical protein
alt prot {289aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         35           2
 C cysteine            1.6          6           2
 D aspartate           5.1         19           1
 E glutamate           4.9         18           2
 F phenylalanine       4.6         17           2
 G glycine             9.8         36           3
 H histidine           1.6          6           1
 I isoleucine          1.9          7           1
 K lysine              3.5         13           1
 L leucine            12.2         45           2
 M methionine          0.8          3           1
 N asparagine          2.2          8           1
 P proline             8.4         31           2
 Q glutamine           3.5         13           1
 R arginine            9.8         36           2
 S serine              8.9         33           2
 T threonine           3.0         11           1
 V valine              4.9         18           1
 W tryptophan          2.2          8           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131381          0.520   PREDICTED: hypothetical protein 
LOC100131381          0.520   PREDICTED: hypothetical protein 
TBKBP1                0.016   TBK1 binding protein 1 
RADIL                 0.015   Rap GTPase interactor 
MUC12                 0.011   PREDICTED: mucin 12, cell surface associated 
SYNJ2                 0.011   synaptojanin 2 
IRS2                  0.011   insulin receptor substrate 2 
PSRC1                 0.010   proline/serine-rich coiled-coil 1 isoform a 
PSRC1                 0.010   proline/serine-rich coiled-coil 1 isoform a 
SEMA6C                0.010   semaphorin Y 
LOC100292682          0.008   PREDICTED: hypothetical protein 
LOC100290022          0.008   PREDICTED: hypothetical protein XP_002346854 
LOC100286972          0.008   PREDICTED: hypothetical protein XP_002342692 
ZC3H18                0.008   zinc finger CCCH-type containing 18 
C10orf47              0.007   hypothetical protein LOC254427 
PRAGMIN               0.007   pragmin 
C9orf131              0.007   hypothetical protein LOC138724 isoform B 
C9orf131              0.007   hypothetical protein LOC138724 isoform D 
C9orf131              0.007   hypothetical protein LOC138724 isoform C 
C9orf131              0.007   hypothetical protein LOC138724 isoform A 
NRG2                  0.007   neuregulin 2 isoform 2 
NRG2                  0.007   neuregulin 2 isoform 4 
NRG2                  0.007   neuregulin 2 isoform 3 
NRG2                  0.007   neuregulin 2 isoform 1 
PGLS                  0.007   6-phosphogluconolactonase 
PTHLH                 0.005   parathyroid hormone-like hormone isoform 1 prepropro...
PTHLH                 0.005   parathyroid hormone-like hormone isoform 1 prepropro...
PTHLH                 0.005   parathyroid hormone-like hormone isoform 2 prepropro...
PTHLH                 0.005   parathyroid hormone-like hormone isoform 2 preproprot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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