Guide to the Human Genome
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Name: RUNX2 Sequence: fasta or formatted (499aa) NCBI GI: 226442791
Description:

runt-related transcription factor 2 isoform b

Referenced in:

Bone and Related Tissues
Additional Genes in Development

Other entries for this name:
alt prot [521aa] runt-related transcription factor 2 isoform a
alt prot [507aa] runt-related transcription factor 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         38          17
 C cysteine            0.8          4           1
 D aspartate           4.4         22           2
 E glutamate           2.0         10           1
 F phenylalanine       3.6         18           2
 G glycine             5.4         27           2
 H histidine           2.2         11           1
 I isoleucine          2.0         10           2
 K lysine              1.6          8           1
 L leucine             5.8         29           2
 M methionine          2.6         13           1
 N asparagine          4.2         21           1
 P proline            11.6         58           3
 Q glutamine           8.6         43          23
 R arginine            6.4         32           2
 S serine             13.8         69           3
 T threonine           7.4         37           3
 V valine              6.0         30           2
 W tryptophan          0.8          4           1
 Y tyrosine            3.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   runt-related transcription factor 2 isoform b [Homo... 
RUNX2                 0.987   runt-related transcription factor 2 isoform a [Homo...
RUNX2                 0.946   runt-related transcription factor 2 isoform c 
RUNX1                 0.558   runt-related transcription factor 1 isoform AML1c [H...
RUNX1                 0.557   runt-related transcription factor 1 isoform AML1b [H...
RUNX3                 0.436   runt-related transcription factor 3 isoform 1 
RUNX3                 0.425   runt-related transcription factor 3 isoform 2 
RUNX1                 0.300   runt-related transcription factor 1 isoform AML1a [...
C14orf4               0.035   chromosome 14 open reading frame 4 
ATXN2                 0.034   ataxin 2 
FRMPD3                0.034   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.034   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.034   PREDICTED: FERM and PDZ domain containing 3 
TBP                   0.033   TATA box binding protein 
NUMBL                 0.032   numb homolog (Drosophila)-like 
MN1                   0.032   meningioma  1 
THAP11                0.031   THAP domain containing 11 
MAML2                 0.030   mastermind-like 2 
EP400                 0.030   E1A binding protein p400 
NCOA6                 0.029   nuclear receptor coactivator 6 
ATXN1                 0.029   ataxin 1 
ATXN1                 0.029   ataxin 1 
AR                    0.028   androgen receptor isoform 1 
MED12                 0.027   mediator complex subunit 12 
NCOA3                 0.026   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.026   nuclear receptor coactivator 3 isoform b 
POU3F2                0.025   POU domain, class 3, transcription factor 2 
ZFHX3                 0.025   AT-binding transcription factor 1 
FOXP2                 0.025   forkhead box P2 isoform I 
FOXP2                 0.025   forkhead box P2 isoform III 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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