Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RUNX2 Sequence: fasta or formatted (521aa) NCBI GI: 226442783
Description:

runt-related transcription factor 2 isoform a

Referenced in:

Bone and Related Tissues
Additional Genes in Development

Other entries for this name:
alt prot [499aa] runt-related transcription factor 2 isoform b
alt prot [507aa] runt-related transcription factor 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         40          17
 C cysteine            1.0          5           1
 D aspartate           5.0         26           3
 E glutamate           1.9         10           1
 F phenylalanine       3.6         19           2
 G glycine             5.2         27           2
 H histidine           2.1         11           1
 I isoleucine          1.9         10           2
 K lysine              1.9         10           2
 L leucine             6.0         31           2
 M methionine          2.5         13           1
 N asparagine          4.0         21           1
 P proline            11.3         59           3
 Q glutamine           8.4         44          23
 R arginine            6.1         32           2
 S serine             14.0         73           3
 T threonine           7.7         40           3
 V valine              5.8         30           2
 W tryptophan          1.0          5           1
 Y tyrosine            2.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   runt-related transcription factor 2 isoform a [Homo... 
RUNX2                 0.961   runt-related transcription factor 2 isoform c 
RUNX2                 0.944   runt-related transcription factor 2 isoform b [Homo...
RUNX1                 0.522   runt-related transcription factor 1 isoform AML1c [H...
RUNX1                 0.521   runt-related transcription factor 1 isoform AML1b [H...
RUNX3                 0.393   runt-related transcription factor 3 isoform 1 
RUNX3                 0.382   runt-related transcription factor 3 isoform 2 
RUNX1                 0.287   runt-related transcription factor 1 isoform AML1a [...
C14orf4               0.034   chromosome 14 open reading frame 4 
ATXN2                 0.033   ataxin 2 
FRMPD3                0.033   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.033   PREDICTED: FERM and PDZ domain containing 3 
FRMPD3                0.033   PREDICTED: FERM and PDZ domain containing 3 
TBP                   0.032   TATA box binding protein 
NUMBL                 0.031   numb homolog (Drosophila)-like 
MN1                   0.031   meningioma  1 
THAP11                0.030   THAP domain containing 11 
MAML2                 0.029   mastermind-like 2 
EP400                 0.029   E1A binding protein p400 
NCOA6                 0.028   nuclear receptor coactivator 6 
ATXN1                 0.028   ataxin 1 
ATXN1                 0.028   ataxin 1 
AR                    0.027   androgen receptor isoform 1 
MED12                 0.026   mediator complex subunit 12 
NCOA3                 0.025   nuclear receptor coactivator 3 isoform a 
NCOA3                 0.025   nuclear receptor coactivator 3 isoform b 
POU3F2                0.024   POU domain, class 3, transcription factor 2 
ZFHX3                 0.024   AT-binding transcription factor 1 
FOXP2                 0.024   forkhead box P2 isoform I 
FOXP2                 0.024   forkhead box P2 isoform III 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press