BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] (173 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 362 e-100 gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] 362 e-100 gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] 362 e-100 gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-05 gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 44 7e-05 gi|145580586 kintoun isoform 2 [Homo sapiens] 44 9e-05 gi|145580588 kintoun isoform 1 [Homo sapiens] 44 9e-05 gi|239755027 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04 gi|239749540 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04 gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo ... 41 5e-04 gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 41 6e-04 gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 41 6e-04 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.002 gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002 gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002 gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.002 gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002 gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002 gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002 gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004 gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004 gi|171543895 ataxin 2 [Homo sapiens] 38 0.004 gi|91208420 bassoon protein [Homo sapiens] 38 0.004 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.005 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.005 gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 38 0.005 gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 38 0.005 gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens] 38 0.005 gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens] 38 0.005 >gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] Length = 173 Score = 362 bits (928), Expect = e-100 Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK Sbjct: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60 Query: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS Sbjct: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120 Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173 >gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] Length = 173 Score = 362 bits (928), Expect = e-100 Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK Sbjct: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60 Query: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS Sbjct: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120 Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173 >gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] Length = 173 Score = 362 bits (928), Expect = e-100 Identities = 173/173 (100%), Positives = 173/173 (100%) Query: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK Sbjct: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60 Query: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS Sbjct: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120 Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173 >gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] Length = 445 Score = 46.2 bits (108), Expect = 1e-05 Identities = 49/147 (33%), Positives = 55/147 (37%), Gaps = 18/147 (12%) Query: 18 PRPAWAPGCTGIRKGDTNKARAS-SPPPRETRGGPGGA------LTLPRKPPGS------ 64 PR +PG TG+ G N R S P E G PGG LPR PG Sbjct: 86 PRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVR 145 Query: 65 GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE---PAGGRGCCTAEGSSC 121 GR A + P+SL G A +GQ GA P RGE P G G S Sbjct: 146 GRNRDPAEPGSLRPTSL--GFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGA 203 Query: 122 GHPWRRERRQGAATRGPSRGPGGERRV 148 GH Q A GPG R+ Sbjct: 204 GHRAATAEHQLGAGFSVRNGPGPPARL 230 >gi|167614488 TBC1 domain family, member 10B [Homo sapiens] Length = 808 Score = 43.9 bits (102), Expect = 7e-05 Identities = 50/188 (26%), Positives = 65/188 (34%), Gaps = 45/188 (23%) Query: 4 PEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG 63 PE P+ +L ++P PA G+ A A SP E R P PG Sbjct: 98 PEAPKPQLPSGPESPEPA---AVAGVETSRALAAGADSPKTEEARPSPA---------PG 145 Query: 64 SGRWLGLAAGTATLPSSLCPG-VQASRERGQRPGAIPAAG-----SRGEPAGGRGCCTAE 117 G G T PS PG + A +PG A+G + G+ GG G A Sbjct: 146 PGTPTGTPTRT---PSRTAPGALTAKPPLAPKPGTTVASGVTARSASGQVTGGHGAAAAT 202 Query: 118 GSSCGHPWRRERRQGAATRGPSRGPGG--ERRVCV---------------RASVAGARPS 160 +S G + GP GP G E V V S + P Sbjct: 203 SASAG-------QAPEDPSGPGTGPSGTCEAPVAVVTVTPAPEPAENSQDLGSTSSLGPG 255 Query: 161 VAGVRGSA 168 ++G RG A Sbjct: 256 ISGPRGQA 263 >gi|145580586 kintoun isoform 2 [Homo sapiens] Length = 789 Score = 43.5 bits (101), Expect = 9e-05 Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%) Query: 21 AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69 A AP + R G +A AS+ P +R GG T GSG LG Sbjct: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422 Query: 70 --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119 AAG +P PG Q SR G PG++ P+ G P GG C + GS Sbjct: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479 Query: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149 S G RE +G + TR S G GG+R C Sbjct: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508 >gi|145580588 kintoun isoform 1 [Homo sapiens] Length = 837 Score = 43.5 bits (101), Expect = 9e-05 Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%) Query: 21 AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69 A AP + R G +A AS+ P +R GG T GSG LG Sbjct: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422 Query: 70 --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119 AAG +P PG Q SR G PG++ P+ G P GG C + GS Sbjct: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479 Query: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149 S G RE +G + TR S G GG+R C Sbjct: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508 >gi|239755027 PREDICTED: hypothetical protein [Homo sapiens] Length = 239 Score = 41.2 bits (95), Expect = 5e-04 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140 L PG++ SR G G G++G G+G G + G W R G T P Sbjct: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119 Query: 141 GPGGERRVCVRASVAGARPSVA 162 GPG ERR C+ V GA+ S + Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141 >gi|239749540 PREDICTED: hypothetical protein [Homo sapiens] Length = 239 Score = 41.2 bits (95), Expect = 5e-04 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140 L PG++ SR G G G++G G+G G + G W R G T P Sbjct: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119 Query: 141 GPGGERRVCVRASVAGARPSVA 162 GPG ERR C+ V GA+ S + Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141 >gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo sapiens] Length = 239 Score = 41.2 bits (95), Expect = 5e-04 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%) Query: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140 L PG++ SR G G G++G G+G G + G W R G T P Sbjct: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119 Query: 141 GPGGERRVCVRASVAGARPSVA 162 GPG ERR C+ V GA+ S + Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141 >gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] Length = 330 Score = 40.8 bits (94), Expect = 6e-04 Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 13/145 (8%) Query: 24 PGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG-SGRWLGLAAGT----ATLP 78 PGC +G + + R ++ P R G GGA L ++P GR A GT TLP Sbjct: 130 PGCPPSPRG-SRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLP 188 Query: 79 SSLCPGVQASRERGQRPGAIPAA---GSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAAT 135 + P + S + G+RPG AA G RG G G T G G W R R+ Sbjct: 189 A---PLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGR-WGRWVRRRVPC 244 Query: 136 RGPSRGPGGERRVCVRASVAGARPS 160 P P + A+ G P+ Sbjct: 245 PLPGLRPHERAGAALLATCRGNAPT 269 >gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] Length = 330 Score = 40.8 bits (94), Expect = 6e-04 Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 13/145 (8%) Query: 24 PGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG-SGRWLGLAAGT----ATLP 78 PGC +G + + R ++ P R G GGA L ++P GR A GT TLP Sbjct: 130 PGCPPSPRG-SRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLP 188 Query: 79 SSLCPGVQASRERGQRPGAIPAA---GSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAAT 135 + P + S + G+RPG AA G RG G G T G G W R R+ Sbjct: 189 A---PLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGR-WGRWVRRRVPC 244 Query: 136 RGPSRGPGGERRVCVRASVAGARPS 160 P P + A+ G P+ Sbjct: 245 PLPGLRPHERAGAALLATCRGNAPT 269 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 39.3 bits (90), Expect = 0.002 Identities = 55/181 (30%), Positives = 65/181 (35%), Gaps = 32/181 (17%) Query: 14 AAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGG-------------ALTLPRK 60 AA P P A G G++ + SP P+ +G PGG T P Sbjct: 709 AAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIG 768 Query: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASR----ERGQR----PGAIPAA-GSRGEPAG-G 110 PPG G G P PG+ R ERG+ P P A G GEP G G Sbjct: 769 PPGPAGQPG-DKGEGGAPG--LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKG 825 Query: 111 RGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARG 170 E G P G+ GP PG + R S G P AG G ARG Sbjct: 826 ERGAPGEKGEGGPPGVAGPPGGSGPAGP---PGPQGVKGERGSPGG--PGAAGFPG-ARG 879 Query: 171 V 171 + Sbjct: 880 L 880 Score = 36.2 bits (82), Expect = 0.015 Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 11/126 (8%) Query: 20 PAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP--PGSGRWLGLAAGTATL 77 PA G G KG + A P GP GA P + PG G+ Sbjct: 493 PAGPNGIPG-EKGPAGERGAPGP------AGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545 Query: 78 PSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG 137 S PG S+ RPG +G RG+P G G +G+ G P + R G G Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQP-GVMGFPGPKGND-GAPGKNGERGGPGGPG 603 Query: 138 PSRGPG 143 P PG Sbjct: 604 PQGPPG 609 Score = 36.2 bits (82), Expect = 0.015 Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 26/134 (19%) Query: 23 APGCTGIR--KGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLA--------A 72 APG G+ KGD + P E +G PG + PPG+ LG+A A Sbjct: 913 APGSPGVSGPKGDAGQ-------PGE-KGSPGA-----QGPPGAPGPLGIAGITGARGLA 959 Query: 73 GTATLPSSL-CPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQ 131 G +P PG Q + +PGA +G RG P G +G G++ G P R Sbjct: 960 GPPGMPGPRGSPGPQGVKGESGKPGANGLSGERG-PPGPQGLPGLAGTA-GEPGRDGNPG 1017 Query: 132 GAATRGPSRGPGGE 145 G PGG+ Sbjct: 1018 SDGLPGRDGSPGGK 1031 Score = 33.5 bits (75), Expect = 0.094 Identities = 45/147 (30%), Positives = 54/147 (36%), Gaps = 15/147 (10%) Query: 21 AWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSS 80 A APG G KGD PP G PG L PPG G A ++ Sbjct: 665 AGAPGAPG-GKGDAGAPGERGPPG--LAGAPG--LRGGAGPPGPEGGKGAAGPPGPPGAA 719 Query: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140 PG+Q G+ G +GEP GG G + G P + R GP Sbjct: 720 GTPGLQGMPGERGGLGSPGPKGDKGEP-GGPG-------ADGVPGKDGPRGPTGPIGPP- 770 Query: 141 GPGGERRVCVRASVAGARPSVAGVRGS 167 GP G+ G P +AG RGS Sbjct: 771 GPAGQPGDKGEGGAPGL-PGIAGPRGS 796 Score = 33.1 bits (74), Expect = 0.12 Identities = 49/171 (28%), Positives = 61/171 (35%), Gaps = 26/171 (15%) Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAA--GTA 75 P P G +G R A +P P +RG PG PR G G A G Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP--QGPRGDKGETGERGAAGIKGHR 1109 Query: 76 TLPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPW-------- 125 P + PG S + GAI + G G P G G +G+S GHP Sbjct: 1110 GFPGN--PGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTS-GHPGPIGPPGPR 1166 Query: 126 --RRERRQGAATRGPSR----GPGGERRVCVRASVAGARPSVAGVRGSARG 170 R ER + P + GP G C A A +AG+ G G Sbjct: 1167 GNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAA---IAGIGGEKAG 1214 Score = 32.3 bits (72), Expect = 0.21 Identities = 41/143 (28%), Positives = 47/143 (32%), Gaps = 17/143 (11%) Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGG----------ALTLPRKPPGSGRW 67 P P+ G G+ K +P RGGPGG T P+ PPG Sbjct: 566 PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625 Query: 68 LGLAAGTATL-PSSL--CPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEG--SS 120 G T P L PG +PG G G P GG+G A G Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGP 685 Query: 121 CGHPWRRERRQGAATRGPSRGPG 143 G R GA GP G G Sbjct: 686 PGLAGAPGLRGGAGPPGPEGGKG 708 Score = 30.8 bits (68), Expect = 0.61 Identities = 38/152 (25%), Positives = 50/152 (32%), Gaps = 21/152 (13%) Query: 23 APGCTGIRKGDTNKARASSPPPRETRGGPGG----ALTLPRKPPGSGRWLGLAAGTATLP 78 APG G R + R P RG G P PPG+ + G + Sbjct: 295 APGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVG 354 Query: 79 SSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGP 138 + PG + + PG AG++G P G P G GP Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPP--------------GPPGINGSPGGKGEMGP 400 Query: 139 SRGPGGERRVCVRA--SVAGARPSVAGVRGSA 168 + PG + R AGA G+RG A Sbjct: 401 AGIPGAPGLMGARGPPGPAGAN-GAPGLRGGA 431 >gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] Length = 460 Score = 39.3 bits (90), Expect = 0.002 Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%) Query: 32 GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83 GD N ASSPP R T P G + PR PG GR LG A GT P L P Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185 Query: 84 GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139 +Q R + +R AG +R P+ R GS P + + + +G Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244 Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166 R G ER V + G R + G+ G Sbjct: 245 RAAGAER---VLNNGRGPRSRLPGLAG 268 >gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] Length = 460 Score = 39.3 bits (90), Expect = 0.002 Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%) Query: 32 GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83 GD N ASSPP R T P G + PR PG GR LG A GT P L P Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185 Query: 84 GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139 +Q R + +R AG +R P+ R GS P + + + +G Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244 Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166 R G ER V + G R + G+ G Sbjct: 245 RAAGAER---VLDNGRGPRSRLPGLAG 268 >gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] Length = 460 Score = 39.3 bits (90), Expect = 0.002 Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%) Query: 32 GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83 GD N ASSPP R T P G + PR PG GR LG A GT P L P Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185 Query: 84 GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139 +Q R + +R AG +R P+ R GS P + + + +G Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244 Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166 R G ER V + G R + G+ G Sbjct: 245 RAAGAER---VLDNGRGPRSRLPGLAG 268 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 38.9 bits (89), Expect = 0.002 Identities = 44/138 (31%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 17 NPRPAWAPGCTGIRKGDTNKARASSPPPRETRG--------GPGGALTLPRKPPGSGRWL 68 +P APG G R + R +P P RG GP G T P PPG + Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP-TGPAGPPGFPGAV 349 Query: 69 GLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRE 128 G G Q R PG AAG G P G G A+G++ G P Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP-GADGQPGAKGAN-GAPGIAG 407 Query: 129 RRQGAATRGPS--RGPGG 144 RGPS +GPGG Sbjct: 408 APGFPGARGPSGPQGPGG 425 Score = 35.8 bits (81), Expect = 0.019 Identities = 47/151 (31%), Positives = 53/151 (35%), Gaps = 30/151 (19%) Query: 20 PAWAPGCTGIRKGDTNKARASSPPPRETRG--------------GPGGALTLPRKPPGSG 65 PA APG G + + P R RG GP GA + R PPG Sbjct: 942 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA-SGERGPPGPM 1000 Query: 66 RWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGS---- 119 GLA PG + S R PG A G RGE PAG G A G+ Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPG---AKGDRGETGPAGPPGAPGAPGAPGPV 1057 Query: 120 -SCGHPWRRERRQGAATRGP-----SRGPGG 144 G R A GP +RGP G Sbjct: 1058 GPAGKSGDRGETGPAGPAGPVGPVGARGPAG 1088 Score = 33.9 bits (76), Expect = 0.072 Identities = 50/167 (29%), Positives = 61/167 (36%), Gaps = 27/167 (16%) Query: 6 QPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSG 65 QP K + A P A APG G R + P P+ G PG PGS Sbjct: 393 QPGAKGANGA--PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGA--------PGSK 442 Query: 66 RWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPW 125 G + PG + E G+R G+RGEP G G G G P Sbjct: 443 GDTGAKGEPGPVGVQGPPG--PAGEEGKR-------GARGEP-GPTGLPGPPGER-GGPG 491 Query: 126 RRERRQGAATRGPSRGPGGERRVCVRASVAGA-----RPSVAGVRGS 167 R GP +GP GER A G+ RP AG+ G+ Sbjct: 492 SRGFPGADGVAGP-KGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537 Score = 30.8 bits (68), Expect = 0.61 Identities = 46/139 (33%), Positives = 55/139 (39%), Gaps = 24/139 (17%) Query: 18 PRPAWAPGCTGIR--KGDTNKARASSP-PPRETRGGPG-----GALTLP-----RKPPGS 64 P P APG G + G+ + AS P PR G PG G P R PPG Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 249 Query: 65 GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124 GL GTA L PG++ R GA AG PAG +G + G + G P Sbjct: 250 QGARGL-PGTAGL-----PGMKGHRGFSGLDGAKGDAG----PAGPKGEPGSPGEN-GAP 298 Query: 125 WRRERRQGAATRGPSRGPG 143 + R RG PG Sbjct: 299 GQMGPRGLPGERGRPGAPG 317 Score = 30.8 bits (68), Expect = 0.61 Identities = 52/185 (28%), Positives = 60/185 (32%), Gaps = 41/185 (22%) Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG--------GALTLPRK--------- 60 P PA G G D K A +P ++G PG GA LP Sbjct: 691 PGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGP 750 Query: 61 -----PPGSGRWLGLAA-----GTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE---- 106 PG GL G A P G GA A G RGE Sbjct: 751 KGADGSPGKDGVRGLTGPIGPPGPAGAPGD--KGESGPSGPAGPTGARGAPGDRGEPGPP 808 Query: 107 -PAGGRGCCTAEG--SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAG 163 PAG G A+G + G P + A GP+ GP G GA+ G Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA-GPAGPPGPIGNVGAPGAK----G 863 Query: 164 VRGSA 168 RGSA Sbjct: 864 ARGSA 868 >gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] Length = 237 Score = 38.9 bits (89), Expect = 0.002 Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%) Query: 65 GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118 G WL + G A P+ P +A R R A+PA +RG PAGG+ G A G Sbjct: 47 GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105 Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172 P RR RR A R P PG R S+ A P + +G G R Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152 Score = 27.7 bits (60), Expect = 5.2 Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 33/148 (22%) Query: 12 SKAAKNP--RPAWAP-----GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGS 64 ++AA+ P RPA +G + + R P PR R PG +L P Sbjct: 82 ARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLL 141 Query: 65 GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG----GRGCCTAEGSS 120 R G +G RG R G+ + G G G T GSS Sbjct: 142 TREKGGRSG----------------RRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSS 185 Query: 121 CG------HPWRRERRQGAATRGPSRGP 142 G RRERRQ + R P Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAP 213 >gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] Length = 237 Score = 38.9 bits (89), Expect = 0.002 Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%) Query: 65 GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118 G WL + G A P+ P +A R R A+PA +RG PAGG+ G A G Sbjct: 47 GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105 Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172 P RR RR A R P PG R S+ A P + +G G R Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152 Score = 27.7 bits (60), Expect = 5.2 Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 33/148 (22%) Query: 12 SKAAKNP--RPAWAP-----GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGS 64 ++AA+ P RPA +G + + R P PR R PG +L P Sbjct: 82 ARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLL 141 Query: 65 GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG----GRGCCTAEGSS 120 R G +G RG R G+ + G G G T GSS Sbjct: 142 TREKGGRSG----------------RRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSS 185 Query: 121 CG------HPWRRERRQGAATRGPSRGP 142 G RRERRQ + R P Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAP 213 >gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] Length = 237 Score = 38.9 bits (89), Expect = 0.002 Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%) Query: 65 GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118 G WL + G A P+ P +A R R A+PA +RG PAGG+ G A G Sbjct: 47 GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105 Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172 P RR RR A R P PG R S+ A P + +G G R Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152 >gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] Length = 1297 Score = 38.1 bits (87), Expect = 0.004 Identities = 48/145 (33%), Positives = 56/145 (38%), Gaps = 36/145 (24%) Query: 45 RETRGGPG-GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGS 103 R R G G GA L R P R L AA A GV+A++ R RPGA A Sbjct: 879 RRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAA-----AQGVRAAQGRAHRPGAQGAPSH 933 Query: 104 RGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG----PSRGPGGER---------RVCV 150 R P G RG RR RR+ A P+R G R R Sbjct: 934 RHRP-GARG-------------RRSRRRAAVALAGGAHPARAALGRRRGGGQAVGARAAH 979 Query: 151 RASVAGARPS---VAGVRGSARGVR 172 +A +AG + VA G A GVR Sbjct: 980 QARLAGGQVDQVVVAARAGDADGVR 1004 Score = 29.3 bits (64), Expect = 1.8 Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 23/113 (20%) Query: 63 GSGRWLGLAAGTATLPSSLCPGVQASRERGQRPG-------AIPAAGSRGEPAGGRGCCT 115 G R G AAG L ++ VQ R+R R G A+ AAG +G AGG G Sbjct: 826 GGARGGGAAAG-GPLAGAV---VQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRV 881 Query: 116 AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSA 168 G GH GAA R P ++R A+ A A V +G A Sbjct: 882 RHGH--GH--------GAAVL--QRAPCRQQRHLAPAAAAAAAQGVRAAQGRA 922 >gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] Length = 1297 Score = 38.1 bits (87), Expect = 0.004 Identities = 48/145 (33%), Positives = 56/145 (38%), Gaps = 36/145 (24%) Query: 45 RETRGGPG-GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGS 103 R R G G GA L R P R L AA A GV+A++ R RPGA A Sbjct: 879 RRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAA-----AQGVRAAQGRAHRPGAQGAPSH 933 Query: 104 RGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG----PSRGPGGER---------RVCV 150 R P G RG RR RR+ A P+R G R R Sbjct: 934 RHRP-GARG-------------RRSRRRAAVALAGGAHPARAALGRRRGGGQAVGARAAH 979 Query: 151 RASVAGARPS---VAGVRGSARGVR 172 +A +AG + VA G A GVR Sbjct: 980 QARLAGGQVDQVVVAARAGDADGVR 1004 Score = 29.3 bits (64), Expect = 1.8 Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 23/113 (20%) Query: 63 GSGRWLGLAAGTATLPSSLCPGVQASRERGQRPG-------AIPAAGSRGEPAGGRGCCT 115 G R G AAG L ++ VQ R+R R G A+ AAG +G AGG G Sbjct: 826 GGARGGGAAAG-GPLAGAV---VQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRV 881 Query: 116 AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSA 168 G GH GAA R P ++R A+ A A V +G A Sbjct: 882 RHGH--GH--------GAAVL--QRAPCRQQRHLAPAAAAAAAQGVRAAQGRA 922 >gi|171543895 ataxin 2 [Homo sapiens] Length = 1313 Score = 38.1 bits (87), Expect = 0.004 Identities = 38/115 (33%), Positives = 42/115 (36%), Gaps = 20/115 (17%) Query: 14 AAKNPRPAWAPGCTGIRKGDTNKARASSPPPRE----TRGGPGGALTLPRKPPGSGRWLG 69 AA P P+ AP G +R SSPP + G GGA PGS R LG Sbjct: 45 AAPGPYPSAAPPPPG---PGPPPSRQSSPPSASDCFGSNGNGGGAFR-----PGSRRLLG 96 Query: 70 LAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124 L L P PGA PAA +R P G R G S P Sbjct: 97 LGGPPRPFVVLLLPLAS--------PGAPPAAPTRASPLGARASPPRSGVSLARP 143 >gi|91208420 bassoon protein [Homo sapiens] Length = 3926 Score = 38.1 bits (87), Expect = 0.004 Identities = 41/137 (29%), Positives = 51/137 (37%), Gaps = 15/137 (10%) Query: 43 PPRETRGGPG-----GALTLPRKPPGSGRW--LGLAAGTATLPSSLCPGVQASRERGQRP 95 PP GPG GA P P G G+ G A TA P PG G P Sbjct: 17 PPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPP---VPGPGPGPGPGPGP 73 Query: 96 GAIPAAGSRGEPAGGRGCCT-----AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCV 150 G+ EP G + + A ++ GH RE R + GP +V Sbjct: 74 GSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPAGQEADGPRRTLQVDS 133 Query: 151 RASVAGARPSVAGVRGS 167 R +G PSV+ RGS Sbjct: 134 RTQRSGRSPSVSPDRGS 150 Score = 32.3 bits (72), Expect = 0.21 Identities = 28/97 (28%), Positives = 34/97 (35%), Gaps = 19/97 (19%) Query: 40 SSPPPRETRGGPGGALTLPR------------KPPGSGRWLGLAAGTATLPSSLCPGVQA 87 S P +T+G P + P+ KP GSG G A G T P A Sbjct: 366 SVQPEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGPGPAPGAKTEPG-------A 418 Query: 88 SRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124 G PGA+P G P GR A + P Sbjct: 419 RMGPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKP 455 Score = 30.8 bits (68), Expect = 0.61 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 24/166 (14%) Query: 6 QPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSG 65 QPQ++ +AA P+ + +P I G A+S P+ + G L P++ Sbjct: 3744 QPQLQGRQAAPGPQQSQSPSSRQIPSG------AASRQPQTQQQQQGLGLQPPQQALTQA 3797 Query: 66 RWLGLAAGTATLPSSLCPGVQASRERGQ-RPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124 R + P++ AS+ G+ +PG A G +PAG GS Sbjct: 3798 R-----LQQQSQPTTRGSAPAASQPAGKPQPGPSTATGP--QPAGPPRAEQTNGSKGTAK 3850 Query: 125 WRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARG 170 ++ R A P GP G + AGARP G G+ G Sbjct: 3851 APQQGRAPQAQPAPGPGPAGVK--------AGARP--GGTPGAPAG 3886 Score = 26.9 bits (58), Expect = 8.8 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%) Query: 4 PEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKA--RASSPPPRETRGGPGGALTLP 58 P +P++ + A + P P P G A PP GG GAL+ P Sbjct: 2296 PSRPEMPVGAAREEPLPTTTPAAIKEAAGAPAPAPLAGQKPPADAAPGGGSGALSRP 2352 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 37.7 bits (86), Expect = 0.005 Identities = 48/156 (30%), Positives = 51/156 (32%), Gaps = 17/156 (10%) Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77 P PA APG G + P RG PG PPG G A Sbjct: 212 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG--------PPGKPGDDGEAGKPGKA 263 Query: 78 PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHPWRRERRQGAAT 135 PG Q +R PG G RG P G +G A G G Sbjct: 264 GERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK-GESGSPGENGSPGP 322 Query: 136 RGPSRGPGGERRVCVRASVAGAR-----PSVAGVRG 166 GP RG GER A AGAR P AG G Sbjct: 323 MGP-RGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 357 Score = 33.9 bits (76), Expect = 0.072 Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 25 GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLCPG 84 G G R D A P P GGPG PG+ G A T G Sbjct: 339 GAAGARGNDGQPGPAGPPGPVGPAGGPGF--------PGAPGAKGEAGPTGARGPE---G 387 Query: 85 VQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGG 144 Q R PG+ AG+ G P G G A+GS+ G P RGP GP G Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNP-GTDGIPGAKGSA-GAPGIAGAPGFPGPRGPP-GPQG 444 Query: 145 ERRVCVRASVAGARPSVAGVRG 166 G P +AG +G Sbjct: 445 ATGPLGPKGQTG-EPGIAGFKG 465 Score = 32.3 bits (72), Expect = 0.21 Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 8/156 (5%) Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG-GALTLPRKPPGSGRWLGLAAGTAT 76 P P G G R +K +P PR G PG P PPG GL A Sbjct: 122 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 181 Query: 77 LPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPWRRERRQGAA 134 + + G G + G RG PAG G +G+ G P Sbjct: 182 QMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNP-GEPGEPGVSGPMG 240 Query: 135 TRGPSRGPG--GERRVCVRASVAGAR--PSVAGVRG 166 RGP PG G+ + AG R P G RG Sbjct: 241 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARG 276 Score = 28.5 bits (62), Expect = 3.0 Identities = 38/153 (24%), Positives = 53/153 (34%), Gaps = 14/153 (9%) Query: 24 PGCTGIRKGDTNKARASSPPPRETRGGPG----GALTLPR------KPPGSGRWLGLAAG 73 PG G + K A +P P+ G PG +T P+ PPG+ + G A Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 904 Query: 74 TATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGA 133 S+ PG + G A G G P GR G P + Sbjct: 905 VGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP--GRAGEPGLQGPAGPPGEKGEPGDD 962 Query: 134 ATRGPSRGPGGERRVCVRASVAGARPSVAGVRG 166 G + GP G + + + + G P G RG Sbjct: 963 GPSG-AEGPPGPQGLAGQRGIVGL-PGQRGERG 993 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 37.7 bits (86), Expect = 0.005 Identities = 48/156 (30%), Positives = 51/156 (32%), Gaps = 17/156 (10%) Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77 P PA APG G + P RG PG PPG G A Sbjct: 143 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG--------PPGKPGDDGEAGKPGKA 194 Query: 78 PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHPWRRERRQGAAT 135 PG Q +R PG G RG P G +G A G G Sbjct: 195 GERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK-GESGSPGENGSPGP 253 Query: 136 RGPSRGPGGERRVCVRASVAGAR-----PSVAGVRG 166 GP RG GER A AGAR P AG G Sbjct: 254 MGP-RGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 288 Score = 33.9 bits (76), Expect = 0.072 Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 15/142 (10%) Query: 25 GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLCPG 84 G G R D A P P GGPG PG+ G A T G Sbjct: 270 GAAGARGNDGQPGPAGPPGPVGPAGGPGF--------PGAPGAKGEAGPTGARGPE---G 318 Query: 85 VQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGG 144 Q R PG+ AG+ G P G G A+GS+ G P RGP GP G Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNP-GTDGIPGAKGSA-GAPGIAGAPGFPGPRGPP-GPQG 375 Query: 145 ERRVCVRASVAGARPSVAGVRG 166 G P +AG +G Sbjct: 376 ATGPLGPKGQTG-EPGIAGFKG 396 Score = 32.3 bits (72), Expect = 0.21 Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 8/156 (5%) Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG-GALTLPRKPPGSGRWLGLAAGTAT 76 P P G G R +K +P PR G PG P PPG GL A Sbjct: 53 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 112 Query: 77 LPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPWRRERRQGAA 134 + + G G + G RG PAG G +G+ G P Sbjct: 113 QMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNP-GEPGEPGVSGPMG 171 Query: 135 TRGPSRGPG--GERRVCVRASVAGAR--PSVAGVRG 166 RGP PG G+ + AG R P G RG Sbjct: 172 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARG 207 Score = 28.5 bits (62), Expect = 3.0 Identities = 38/153 (24%), Positives = 53/153 (34%), Gaps = 14/153 (9%) Query: 24 PGCTGIRKGDTNKARASSPPPRETRGGPG----GALTLPR------KPPGSGRWLGLAAG 73 PG G + K A +P P+ G PG +T P+ PPG+ + G A Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 835 Query: 74 TATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGA 133 S+ PG + G A G G P GR G P + Sbjct: 836 VGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP--GRAGEPGLQGPAGPPGEKGEPGDD 893 Query: 134 ATRGPSRGPGGERRVCVRASVAGARPSVAGVRG 166 G + GP G + + + + G P G RG Sbjct: 894 GPSG-AEGPPGPQGLAGQRGIVGL-PGQRGERG 924 >gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] Length = 261 Score = 37.7 bits (86), Expect = 0.005 Identities = 50/158 (31%), Positives = 55/158 (34%), Gaps = 36/158 (22%) Query: 3 LPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKA---RASSPPPRETRGGP-----GGA 54 LP +P L + R PGC R + R P R R G G Sbjct: 59 LPARPPGALGSVLRPLRAR--PGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSP 116 Query: 55 LTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPA---AGSRGEPAGG- 110 PR PG L LA G A PGV R QRPG G G P GG Sbjct: 117 QPAPRPAPGRSSALALAGGAA-------PGVA----RAQRPGGSGGRSHPGGPGSPRGGG 165 Query: 111 ------RGCCTAEGSSCGHPWRRERRQGAATRGPSRGP 142 RG A+G G P R R A TRG + P Sbjct: 166 TVGPGDRGPAAADG---GRPQRTVR--AAETRGAAAAP 198 >gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] Length = 1690 Score = 37.7 bits (86), Expect = 0.005 Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 13/109 (11%) Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77 P P PG G R GD S P PR +G PG PPGS G A T Sbjct: 1200 PGPVGIPGLKGER-GDPGSPGISPPGPRGKKGPPG--------PPGSSGPPGPAGATGRA 1250 Query: 78 PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHP 124 P + P ++G PG G+ G P G E CG P Sbjct: 1251 PKDI-PDPGPPGDQGP-PGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLP 1297 Score = 32.3 bits (72), Expect = 0.21 Identities = 37/148 (25%), Positives = 48/148 (32%), Gaps = 22/148 (14%) Query: 18 PRPAWAPGCTGIR--------KGDTNKARASSPP----------PRETRGGPGGALTLPR 59 P P PG TG+R GD + + PP P+ +G P P Sbjct: 1026 PGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFG-PP 1084 Query: 60 KPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG-GRGCCTAEG 118 P G G PG+Q R RPG ++G G P G + Sbjct: 1085 GPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQP 1144 Query: 119 SSCGHPWRRERRQGAATRGPS--RGPGG 144 G P R + GP +GP G Sbjct: 1145 GEMGDPGPRGLQGDPGIPGPPGIKGPSG 1172 Score = 27.3 bits (59), Expect = 6.7 Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 9/105 (8%) Query: 23 APGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLC 82 A GC G + K + P R RG G PPG + + + T Sbjct: 925 AEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAI-----GPPGDEGEMAIISQKGTPGEPGP 979 Query: 83 PGVQA-SRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHP 124 PG ERG + G G RGEP G G E G P Sbjct: 980 PGDDGFPGERGDK-GTPGMQGRRGEPGRYGPPGFHRGEPGEKGQP 1023 >gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens] Length = 438 Score = 37.7 bits (86), Expect = 0.005 Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 8/110 (7%) Query: 3 LPEQPQVKLSKAAKNPRPAWAPGC-TGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP 61 LP Q Q + ++A+ P+P P C T I+ G A P G G L +P+ Sbjct: 35 LPRQWQSLIEESARRPKPLVDPACITSIQPG----APKGEPHDVAPNGPSAGGLAIPQSS 90 Query: 62 PGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGR 111 S R A G PS G AS + P PAA + P G R Sbjct: 91 SSSSRPPTRARGA---PSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPR 137 >gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens] Length = 438 Score = 37.7 bits (86), Expect = 0.005 Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 8/110 (7%) Query: 3 LPEQPQVKLSKAAKNPRPAWAPGC-TGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP 61 LP Q Q + ++A+ P+P P C T I+ G A P G G L +P+ Sbjct: 35 LPRQWQSLIEESARRPKPLVDPACITSIQPG----APKGEPHDVAPNGPSAGGLAIPQSS 90 Query: 62 PGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGR 111 S R A G PS G AS + P PAA + P G R Sbjct: 91 SSSSRPPTRARGA---PSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPR 137 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.314 0.134 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,828,387 Number of Sequences: 37866 Number of extensions: 655268 Number of successful extensions: 3897 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 640 Number of HSP's that attempted gapping in prelim test: 3278 Number of HSP's gapped (non-prelim): 1217 length of query: 173 length of database: 18,247,518 effective HSP length: 95 effective length of query: 78 effective length of database: 14,650,248 effective search space: 1142719344 effective search space used: 1142719344 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.