Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 169188544
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
(173 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 362 e-100
gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] 362 e-100
gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] 362 e-100
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens] 46 1e-05
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 44 7e-05
gi|145580586 kintoun isoform 2 [Homo sapiens] 44 9e-05
gi|145580588 kintoun isoform 1 [Homo sapiens] 44 9e-05
gi|239755027 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04
gi|239749540 PREDICTED: hypothetical protein [Homo sapiens] 41 5e-04
gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo ... 41 5e-04
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 41 6e-04
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 41 6e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.002
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 39 0.002
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 38 0.004
gi|171543895 ataxin 2 [Homo sapiens] 38 0.004
gi|91208420 bassoon protein [Homo sapiens] 38 0.004
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.005
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.005
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 38 0.005
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 38 0.005
gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens] 38 0.005
gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens] 38 0.005
>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 362 bits (928), Expect = e-100
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK
Sbjct: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
Query: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS
Sbjct: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV
Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
>gi|169201345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 362 bits (928), Expect = e-100
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK
Sbjct: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
Query: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS
Sbjct: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV
Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
>gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 362 bits (928), Expect = e-100
Identities = 173/173 (100%), Positives = 173/173 (100%)
Query: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK
Sbjct: 1 MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
Query: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS
Sbjct: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV
Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 445
Score = 46.2 bits (108), Expect = 1e-05
Identities = 49/147 (33%), Positives = 55/147 (37%), Gaps = 18/147 (12%)
Query: 18 PRPAWAPGCTGIRKGDTNKARAS-SPPPRETRGGPGGA------LTLPRKPPGS------ 64
PR +PG TG+ G N R S P E G PGG LPR PG
Sbjct: 86 PRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVR 145
Query: 65 GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE---PAGGRGCCTAEGSSC 121
GR A + P+SL G A +GQ GA P RGE P G G S
Sbjct: 146 GRNRDPAEPGSLRPTSL--GFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGA 203
Query: 122 GHPWRRERRQGAATRGPSRGPGGERRV 148
GH Q A GPG R+
Sbjct: 204 GHRAATAEHQLGAGFSVRNGPGPPARL 230
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 43.9 bits (102), Expect = 7e-05
Identities = 50/188 (26%), Positives = 65/188 (34%), Gaps = 45/188 (23%)
Query: 4 PEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG 63
PE P+ +L ++P PA G+ A A SP E R P PG
Sbjct: 98 PEAPKPQLPSGPESPEPA---AVAGVETSRALAAGADSPKTEEARPSPA---------PG 145
Query: 64 SGRWLGLAAGTATLPSSLCPG-VQASRERGQRPGAIPAAG-----SRGEPAGGRGCCTAE 117
G G T PS PG + A +PG A+G + G+ GG G A
Sbjct: 146 PGTPTGTPTRT---PSRTAPGALTAKPPLAPKPGTTVASGVTARSASGQVTGGHGAAAAT 202
Query: 118 GSSCGHPWRRERRQGAATRGPSRGPGG--ERRVCV---------------RASVAGARPS 160
+S G + GP GP G E V V S + P
Sbjct: 203 SASAG-------QAPEDPSGPGTGPSGTCEAPVAVVTVTPAPEPAENSQDLGSTSSLGPG 255
Query: 161 VAGVRGSA 168
++G RG A
Sbjct: 256 ISGPRGQA 263
>gi|145580586 kintoun isoform 2 [Homo sapiens]
Length = 789
Score = 43.5 bits (101), Expect = 9e-05
Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 21 AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69
A AP + R G +A AS+ P +R GG T GSG LG
Sbjct: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422
Query: 70 --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119
AAG +P PG Q SR G PG++ P+ G P GG C + GS
Sbjct: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479
Query: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149
S G RE +G + TR S G GG+R C
Sbjct: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508
>gi|145580588 kintoun isoform 1 [Homo sapiens]
Length = 837
Score = 43.5 bits (101), Expect = 9e-05
Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%)
Query: 21 AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69
A AP + R G +A AS+ P +R GG T GSG LG
Sbjct: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422
Query: 70 --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119
AAG +P PG Q SR G PG++ P+ G P GG C + GS
Sbjct: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479
Query: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149
S G RE +G + TR S G GG+R C
Sbjct: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508
>gi|239755027 PREDICTED: hypothetical protein [Homo sapiens]
Length = 239
Score = 41.2 bits (95), Expect = 5e-04
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
L PG++ SR G G G++G G+G G + G W R G T P
Sbjct: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119
Query: 141 GPGGERRVCVRASVAGARPSVA 162
GPG ERR C+ V GA+ S +
Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141
>gi|239749540 PREDICTED: hypothetical protein [Homo sapiens]
Length = 239
Score = 41.2 bits (95), Expect = 5e-04
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
L PG++ SR G G G++G G+G G + G W R G T P
Sbjct: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119
Query: 141 GPGGERRVCVRASVAGARPSVA 162
GPG ERR C+ V GA+ S +
Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141
>gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo
sapiens]
Length = 239
Score = 41.2 bits (95), Expect = 5e-04
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
L PG++ SR G G G++G G+G G + G W R G T P
Sbjct: 66 LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119
Query: 141 GPGGERRVCVRASVAGARPSVA 162
GPG ERR C+ V GA+ S +
Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 40.8 bits (94), Expect = 6e-04
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 24 PGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG-SGRWLGLAAGT----ATLP 78
PGC +G + + R ++ P R G GGA L ++P GR A GT TLP
Sbjct: 130 PGCPPSPRG-SRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLP 188
Query: 79 SSLCPGVQASRERGQRPGAIPAA---GSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAAT 135
+ P + S + G+RPG AA G RG G G T G G W R R+
Sbjct: 189 A---PLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGR-WGRWVRRRVPC 244
Query: 136 RGPSRGPGGERRVCVRASVAGARPS 160
P P + A+ G P+
Sbjct: 245 PLPGLRPHERAGAALLATCRGNAPT 269
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 40.8 bits (94), Expect = 6e-04
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 24 PGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG-SGRWLGLAAGT----ATLP 78
PGC +G + + R ++ P R G GGA L ++P GR A GT TLP
Sbjct: 130 PGCPPSPRG-SRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLP 188
Query: 79 SSLCPGVQASRERGQRPGAIPAA---GSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAAT 135
+ P + S + G+RPG AA G RG G G T G G W R R+
Sbjct: 189 A---PLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGR-WGRWVRRRVPC 244
Query: 136 RGPSRGPGGERRVCVRASVAGARPS 160
P P + A+ G P+
Sbjct: 245 PLPGLRPHERAGAALLATCRGNAPT 269
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.3 bits (90), Expect = 0.002
Identities = 55/181 (30%), Positives = 65/181 (35%), Gaps = 32/181 (17%)
Query: 14 AAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGG-------------ALTLPRK 60
AA P P A G G++ + SP P+ +G PGG T P
Sbjct: 709 AAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIG 768
Query: 61 PPGSGRWLGLAAGTATLPSSLCPGVQASR----ERGQR----PGAIPAA-GSRGEPAG-G 110
PPG G G P PG+ R ERG+ P P A G GEP G G
Sbjct: 769 PPGPAGQPG-DKGEGGAPG--LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKG 825
Query: 111 RGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARG 170
E G P G+ GP PG + R S G P AG G ARG
Sbjct: 826 ERGAPGEKGEGGPPGVAGPPGGSGPAGP---PGPQGVKGERGSPGG--PGAAGFPG-ARG 879
Query: 171 V 171
+
Sbjct: 880 L 880
Score = 36.2 bits (82), Expect = 0.015
Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 20 PAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP--PGSGRWLGLAAGTATL 77
PA G G KG + A P GP GA P + PG G+
Sbjct: 493 PAGPNGIPG-EKGPAGERGAPGP------AGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Query: 78 PSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG 137
S PG S+ RPG +G RG+P G G +G+ G P + R G G
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQP-GVMGFPGPKGND-GAPGKNGERGGPGGPG 603
Query: 138 PSRGPG 143
P PG
Sbjct: 604 PQGPPG 609
Score = 36.2 bits (82), Expect = 0.015
Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 23 APGCTGIR--KGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLA--------A 72
APG G+ KGD + P E +G PG + PPG+ LG+A A
Sbjct: 913 APGSPGVSGPKGDAGQ-------PGE-KGSPGA-----QGPPGAPGPLGIAGITGARGLA 959
Query: 73 GTATLPSSL-CPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQ 131
G +P PG Q + +PGA +G RG P G +G G++ G P R
Sbjct: 960 GPPGMPGPRGSPGPQGVKGESGKPGANGLSGERG-PPGPQGLPGLAGTA-GEPGRDGNPG 1017
Query: 132 GAATRGPSRGPGGE 145
G PGG+
Sbjct: 1018 SDGLPGRDGSPGGK 1031
Score = 33.5 bits (75), Expect = 0.094
Identities = 45/147 (30%), Positives = 54/147 (36%), Gaps = 15/147 (10%)
Query: 21 AWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSS 80
A APG G KGD PP G PG L PPG G A ++
Sbjct: 665 AGAPGAPG-GKGDAGAPGERGPPG--LAGAPG--LRGGAGPPGPEGGKGAAGPPGPPGAA 719
Query: 81 LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
PG+Q G+ G +GEP GG G + G P + R GP
Sbjct: 720 GTPGLQGMPGERGGLGSPGPKGDKGEP-GGPG-------ADGVPGKDGPRGPTGPIGPP- 770
Query: 141 GPGGERRVCVRASVAGARPSVAGVRGS 167
GP G+ G P +AG RGS
Sbjct: 771 GPAGQPGDKGEGGAPGL-PGIAGPRGS 796
Score = 33.1 bits (74), Expect = 0.12
Identities = 49/171 (28%), Positives = 61/171 (35%), Gaps = 26/171 (15%)
Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAA--GTA 75
P P G +G R A +P P +RG PG PR G G A G
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP--QGPRGDKGETGERGAAGIKGHR 1109
Query: 76 TLPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPW-------- 125
P + PG S + GAI + G G P G G +G+S GHP
Sbjct: 1110 GFPGN--PGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTS-GHPGPIGPPGPR 1166
Query: 126 --RRERRQGAATRGPSR----GPGGERRVCVRASVAGARPSVAGVRGSARG 170
R ER + P + GP G C A A +AG+ G G
Sbjct: 1167 GNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAA---IAGIGGEKAG 1214
Score = 32.3 bits (72), Expect = 0.21
Identities = 41/143 (28%), Positives = 47/143 (32%), Gaps = 17/143 (11%)
Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGG----------ALTLPRKPPGSGRW 67
P P+ G G+ K +P RGGPGG T P+ PPG
Sbjct: 566 PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625
Query: 68 LGLAAGTATL-PSSL--CPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEG--SS 120
G T P L PG +PG G G P GG+G A G
Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGP 685
Query: 121 CGHPWRRERRQGAATRGPSRGPG 143
G R GA GP G G
Sbjct: 686 PGLAGAPGLRGGAGPPGPEGGKG 708
Score = 30.8 bits (68), Expect = 0.61
Identities = 38/152 (25%), Positives = 50/152 (32%), Gaps = 21/152 (13%)
Query: 23 APGCTGIRKGDTNKARASSPPPRETRGGPGG----ALTLPRKPPGSGRWLGLAAGTATLP 78
APG G R + R P RG G P PPG+ + G +
Sbjct: 295 APGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVG 354
Query: 79 SSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGP 138
+ PG + + PG AG++G P G P G GP
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPP--------------GPPGINGSPGGKGEMGP 400
Query: 139 SRGPGGERRVCVRA--SVAGARPSVAGVRGSA 168
+ PG + R AGA G+RG A
Sbjct: 401 AGIPGAPGLMGARGPPGPAGAN-GAPGLRGGA 431
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 39.3 bits (90), Expect = 0.002
Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 32 GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83
GD N ASSPP R T P G + PR PG GR LG A GT P L P
Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185
Query: 84 GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139
+Q R + +R AG +R P+ R GS P + + + +G
Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244
Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166
R G ER V + G R + G+ G
Sbjct: 245 RAAGAER---VLNNGRGPRSRLPGLAG 268
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 39.3 bits (90), Expect = 0.002
Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 32 GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83
GD N ASSPP R T P G + PR PG GR LG A GT P L P
Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185
Query: 84 GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139
+Q R + +R AG +R P+ R GS P + + + +G
Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244
Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166
R G ER V + G R + G+ G
Sbjct: 245 RAAGAER---VLDNGRGPRSRLPGLAG 268
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 39.3 bits (90), Expect = 0.002
Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%)
Query: 32 GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83
GD N ASSPP R T P G + PR PG GR LG A GT P L P
Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185
Query: 84 GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139
+Q R + +R AG +R P+ R GS P + + + +G
Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244
Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166
R G ER V + G R + G+ G
Sbjct: 245 RAAGAER---VLDNGRGPRSRLPGLAG 268
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.9 bits (89), Expect = 0.002
Identities = 44/138 (31%), Positives = 52/138 (37%), Gaps = 13/138 (9%)
Query: 17 NPRPAWAPGCTGIRKGDTNKARASSPPPRETRG--------GPGGALTLPRKPPGSGRWL 68
+P APG G R + R +P P RG GP G T P PPG +
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP-TGPAGPPGFPGAV 349
Query: 69 GLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRE 128
G G Q R PG AAG G P G G A+G++ G P
Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP-GADGQPGAKGAN-GAPGIAG 407
Query: 129 RRQGAATRGPS--RGPGG 144
RGPS +GPGG
Sbjct: 408 APGFPGARGPSGPQGPGG 425
Score = 35.8 bits (81), Expect = 0.019
Identities = 47/151 (31%), Positives = 53/151 (35%), Gaps = 30/151 (19%)
Query: 20 PAWAPGCTGIRKGDTNKARASSPPPRETRG--------------GPGGALTLPRKPPGSG 65
PA APG G + + P R RG GP GA + R PPG
Sbjct: 942 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA-SGERGPPGPM 1000
Query: 66 RWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGS---- 119
GLA PG + S R PG A G RGE PAG G A G+
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPG---AKGDRGETGPAGPPGAPGAPGAPGPV 1057
Query: 120 -SCGHPWRRERRQGAATRGP-----SRGPGG 144
G R A GP +RGP G
Sbjct: 1058 GPAGKSGDRGETGPAGPAGPVGPVGARGPAG 1088
Score = 33.9 bits (76), Expect = 0.072
Identities = 50/167 (29%), Positives = 61/167 (36%), Gaps = 27/167 (16%)
Query: 6 QPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSG 65
QP K + A P A APG G R + P P+ G PG PGS
Sbjct: 393 QPGAKGANGA--PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGA--------PGSK 442
Query: 66 RWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPW 125
G + PG + E G+R G+RGEP G G G G P
Sbjct: 443 GDTGAKGEPGPVGVQGPPG--PAGEEGKR-------GARGEP-GPTGLPGPPGER-GGPG 491
Query: 126 RRERRQGAATRGPSRGPGGERRVCVRASVAGA-----RPSVAGVRGS 167
R GP +GP GER A G+ RP AG+ G+
Sbjct: 492 SRGFPGADGVAGP-KGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537
Score = 30.8 bits (68), Expect = 0.61
Identities = 46/139 (33%), Positives = 55/139 (39%), Gaps = 24/139 (17%)
Query: 18 PRPAWAPGCTGIR--KGDTNKARASSP-PPRETRGGPG-----GALTLP-----RKPPGS 64
P P APG G + G+ + AS P PR G PG G P R PPG
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 249
Query: 65 GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124
GL GTA L PG++ R GA AG PAG +G + G + G P
Sbjct: 250 QGARGL-PGTAGL-----PGMKGHRGFSGLDGAKGDAG----PAGPKGEPGSPGEN-GAP 298
Query: 125 WRRERRQGAATRGPSRGPG 143
+ R RG PG
Sbjct: 299 GQMGPRGLPGERGRPGAPG 317
Score = 30.8 bits (68), Expect = 0.61
Identities = 52/185 (28%), Positives = 60/185 (32%), Gaps = 41/185 (22%)
Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG--------GALTLPRK--------- 60
P PA G G D K A +P ++G PG GA LP
Sbjct: 691 PGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGP 750
Query: 61 -----PPGSGRWLGLAA-----GTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE---- 106
PG GL G A P G GA A G RGE
Sbjct: 751 KGADGSPGKDGVRGLTGPIGPPGPAGAPGD--KGESGPSGPAGPTGARGAPGDRGEPGPP 808
Query: 107 -PAGGRGCCTAEG--SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAG 163
PAG G A+G + G P + A GP+ GP G GA+ G
Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA-GPAGPPGPIGNVGAPGAK----G 863
Query: 164 VRGSA 168
RGSA
Sbjct: 864 ARGSA 868
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 65 GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118
G WL + G A P+ P +A R R A+PA +RG PAGG+ G A G
Sbjct: 47 GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105
Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172
P RR RR A R P PG R S+ A P + +G G R
Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152
Score = 27.7 bits (60), Expect = 5.2
Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 33/148 (22%)
Query: 12 SKAAKNP--RPAWAP-----GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGS 64
++AA+ P RPA +G + + R P PR R PG +L P
Sbjct: 82 ARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLL 141
Query: 65 GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG----GRGCCTAEGSS 120
R G +G RG R G+ + G G G T GSS
Sbjct: 142 TREKGGRSG----------------RRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSS 185
Query: 121 CG------HPWRRERRQGAATRGPSRGP 142
G RRERRQ + R P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAP 213
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 65 GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118
G WL + G A P+ P +A R R A+PA +RG PAGG+ G A G
Sbjct: 47 GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105
Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172
P RR RR A R P PG R S+ A P + +G G R
Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152
Score = 27.7 bits (60), Expect = 5.2
Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 33/148 (22%)
Query: 12 SKAAKNP--RPAWAP-----GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGS 64
++AA+ P RPA +G + + R P PR R PG +L P
Sbjct: 82 ARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLL 141
Query: 65 GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG----GRGCCTAEGSS 120
R G +G RG R G+ + G G G T GSS
Sbjct: 142 TREKGGRSG----------------RRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSS 185
Query: 121 CG------HPWRRERRQGAATRGPSRGP 142
G RRERRQ + R P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAP 213
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%)
Query: 65 GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118
G WL + G A P+ P +A R R A+PA +RG PAGG+ G A G
Sbjct: 47 GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105
Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172
P RR RR A R P PG R S+ A P + +G G R
Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 38.1 bits (87), Expect = 0.004
Identities = 48/145 (33%), Positives = 56/145 (38%), Gaps = 36/145 (24%)
Query: 45 RETRGGPG-GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGS 103
R R G G GA L R P R L AA A GV+A++ R RPGA A
Sbjct: 879 RRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAA-----AQGVRAAQGRAHRPGAQGAPSH 933
Query: 104 RGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG----PSRGPGGER---------RVCV 150
R P G RG RR RR+ A P+R G R R
Sbjct: 934 RHRP-GARG-------------RRSRRRAAVALAGGAHPARAALGRRRGGGQAVGARAAH 979
Query: 151 RASVAGARPS---VAGVRGSARGVR 172
+A +AG + VA G A GVR
Sbjct: 980 QARLAGGQVDQVVVAARAGDADGVR 1004
Score = 29.3 bits (64), Expect = 1.8
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 63 GSGRWLGLAAGTATLPSSLCPGVQASRERGQRPG-------AIPAAGSRGEPAGGRGCCT 115
G R G AAG L ++ VQ R+R R G A+ AAG +G AGG G
Sbjct: 826 GGARGGGAAAG-GPLAGAV---VQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRV 881
Query: 116 AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSA 168
G GH GAA R P ++R A+ A A V +G A
Sbjct: 882 RHGH--GH--------GAAVL--QRAPCRQQRHLAPAAAAAAAQGVRAAQGRA 922
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 38.1 bits (87), Expect = 0.004
Identities = 48/145 (33%), Positives = 56/145 (38%), Gaps = 36/145 (24%)
Query: 45 RETRGGPG-GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGS 103
R R G G GA L R P R L AA A GV+A++ R RPGA A
Sbjct: 879 RRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAA-----AQGVRAAQGRAHRPGAQGAPSH 933
Query: 104 RGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG----PSRGPGGER---------RVCV 150
R P G RG RR RR+ A P+R G R R
Sbjct: 934 RHRP-GARG-------------RRSRRRAAVALAGGAHPARAALGRRRGGGQAVGARAAH 979
Query: 151 RASVAGARPS---VAGVRGSARGVR 172
+A +AG + VA G A GVR
Sbjct: 980 QARLAGGQVDQVVVAARAGDADGVR 1004
Score = 29.3 bits (64), Expect = 1.8
Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 23/113 (20%)
Query: 63 GSGRWLGLAAGTATLPSSLCPGVQASRERGQRPG-------AIPAAGSRGEPAGGRGCCT 115
G R G AAG L ++ VQ R+R R G A+ AAG +G AGG G
Sbjct: 826 GGARGGGAAAG-GPLAGAV---VQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRV 881
Query: 116 AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSA 168
G GH GAA R P ++R A+ A A V +G A
Sbjct: 882 RHGH--GH--------GAAVL--QRAPCRQQRHLAPAAAAAAAQGVRAAQGRA 922
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 38.1 bits (87), Expect = 0.004
Identities = 38/115 (33%), Positives = 42/115 (36%), Gaps = 20/115 (17%)
Query: 14 AAKNPRPAWAPGCTGIRKGDTNKARASSPPPRE----TRGGPGGALTLPRKPPGSGRWLG 69
AA P P+ AP G +R SSPP + G GGA PGS R LG
Sbjct: 45 AAPGPYPSAAPPPPG---PGPPPSRQSSPPSASDCFGSNGNGGGAFR-----PGSRRLLG 96
Query: 70 LAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124
L L P PGA PAA +R P G R G S P
Sbjct: 97 LGGPPRPFVVLLLPLAS--------PGAPPAAPTRASPLGARASPPRSGVSLARP 143
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 38.1 bits (87), Expect = 0.004
Identities = 41/137 (29%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 43 PPRETRGGPG-----GALTLPRKPPGSGRW--LGLAAGTATLPSSLCPGVQASRERGQRP 95
PP GPG GA P P G G+ G A TA P PG G P
Sbjct: 17 PPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPP---VPGPGPGPGPGPGP 73
Query: 96 GAIPAAGSRGEPAGGRGCCT-----AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCV 150
G+ EP G + + A ++ GH RE R + GP +V
Sbjct: 74 GSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPAGQEADGPRRTLQVDS 133
Query: 151 RASVAGARPSVAGVRGS 167
R +G PSV+ RGS
Sbjct: 134 RTQRSGRSPSVSPDRGS 150
Score = 32.3 bits (72), Expect = 0.21
Identities = 28/97 (28%), Positives = 34/97 (35%), Gaps = 19/97 (19%)
Query: 40 SSPPPRETRGGPGGALTLPR------------KPPGSGRWLGLAAGTATLPSSLCPGVQA 87
S P +T+G P + P+ KP GSG G A G T P A
Sbjct: 366 SVQPEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGPGPAPGAKTEPG-------A 418
Query: 88 SRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124
G PGA+P G P GR A + P
Sbjct: 419 RMGPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKP 455
Score = 30.8 bits (68), Expect = 0.61
Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 24/166 (14%)
Query: 6 QPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSG 65
QPQ++ +AA P+ + +P I G A+S P+ + G L P++
Sbjct: 3744 QPQLQGRQAAPGPQQSQSPSSRQIPSG------AASRQPQTQQQQQGLGLQPPQQALTQA 3797
Query: 66 RWLGLAAGTATLPSSLCPGVQASRERGQ-RPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124
R + P++ AS+ G+ +PG A G +PAG GS
Sbjct: 3798 R-----LQQQSQPTTRGSAPAASQPAGKPQPGPSTATGP--QPAGPPRAEQTNGSKGTAK 3850
Query: 125 WRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARG 170
++ R A P GP G + AGARP G G+ G
Sbjct: 3851 APQQGRAPQAQPAPGPGPAGVK--------AGARP--GGTPGAPAG 3886
Score = 26.9 bits (58), Expect = 8.8
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 4 PEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKA--RASSPPPRETRGGPGGALTLP 58
P +P++ + A + P P P G A PP GG GAL+ P
Sbjct: 2296 PSRPEMPVGAAREEPLPTTTPAAIKEAAGAPAPAPLAGQKPPADAAPGGGSGALSRP 2352
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.7 bits (86), Expect = 0.005
Identities = 48/156 (30%), Positives = 51/156 (32%), Gaps = 17/156 (10%)
Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77
P PA APG G + P RG PG PPG G A
Sbjct: 212 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG--------PPGKPGDDGEAGKPGKA 263
Query: 78 PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHPWRRERRQGAAT 135
PG Q +R PG G RG P G +G A G G
Sbjct: 264 GERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK-GESGSPGENGSPGP 322
Query: 136 RGPSRGPGGERRVCVRASVAGAR-----PSVAGVRG 166
GP RG GER A AGAR P AG G
Sbjct: 323 MGP-RGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 357
Score = 33.9 bits (76), Expect = 0.072
Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 25 GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLCPG 84
G G R D A P P GGPG PG+ G A T G
Sbjct: 339 GAAGARGNDGQPGPAGPPGPVGPAGGPGF--------PGAPGAKGEAGPTGARGPE---G 387
Query: 85 VQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGG 144
Q R PG+ AG+ G P G G A+GS+ G P RGP GP G
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNP-GTDGIPGAKGSA-GAPGIAGAPGFPGPRGPP-GPQG 444
Query: 145 ERRVCVRASVAGARPSVAGVRG 166
G P +AG +G
Sbjct: 445 ATGPLGPKGQTG-EPGIAGFKG 465
Score = 32.3 bits (72), Expect = 0.21
Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 8/156 (5%)
Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG-GALTLPRKPPGSGRWLGLAAGTAT 76
P P G G R +K +P PR G PG P PPG GL A
Sbjct: 122 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 181
Query: 77 LPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPWRRERRQGAA 134
+ + G G + G RG PAG G +G+ G P
Sbjct: 182 QMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNP-GEPGEPGVSGPMG 240
Query: 135 TRGPSRGPG--GERRVCVRASVAGAR--PSVAGVRG 166
RGP PG G+ + AG R P G RG
Sbjct: 241 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARG 276
Score = 28.5 bits (62), Expect = 3.0
Identities = 38/153 (24%), Positives = 53/153 (34%), Gaps = 14/153 (9%)
Query: 24 PGCTGIRKGDTNKARASSPPPRETRGGPG----GALTLPR------KPPGSGRWLGLAAG 73
PG G + K A +P P+ G PG +T P+ PPG+ + G A
Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 904
Query: 74 TATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGA 133
S+ PG + G A G G P GR G P +
Sbjct: 905 VGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP--GRAGEPGLQGPAGPPGEKGEPGDD 962
Query: 134 ATRGPSRGPGGERRVCVRASVAGARPSVAGVRG 166
G + GP G + + + + G P G RG
Sbjct: 963 GPSG-AEGPPGPQGLAGQRGIVGL-PGQRGERG 993
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.7 bits (86), Expect = 0.005
Identities = 48/156 (30%), Positives = 51/156 (32%), Gaps = 17/156 (10%)
Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77
P PA APG G + P RG PG PPG G A
Sbjct: 143 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG--------PPGKPGDDGEAGKPGKA 194
Query: 78 PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHPWRRERRQGAAT 135
PG Q +R PG G RG P G +G A G G
Sbjct: 195 GERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK-GESGSPGENGSPGP 253
Query: 136 RGPSRGPGGERRVCVRASVAGAR-----PSVAGVRG 166
GP RG GER A AGAR P AG G
Sbjct: 254 MGP-RGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 288
Score = 33.9 bits (76), Expect = 0.072
Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 15/142 (10%)
Query: 25 GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLCPG 84
G G R D A P P GGPG PG+ G A T G
Sbjct: 270 GAAGARGNDGQPGPAGPPGPVGPAGGPGF--------PGAPGAKGEAGPTGARGPE---G 318
Query: 85 VQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGG 144
Q R PG+ AG+ G P G G A+GS+ G P RGP GP G
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNP-GTDGIPGAKGSA-GAPGIAGAPGFPGPRGPP-GPQG 375
Query: 145 ERRVCVRASVAGARPSVAGVRG 166
G P +AG +G
Sbjct: 376 ATGPLGPKGQTG-EPGIAGFKG 396
Score = 32.3 bits (72), Expect = 0.21
Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 8/156 (5%)
Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG-GALTLPRKPPGSGRWLGLAAGTAT 76
P P G G R +K +P PR G PG P PPG GL A
Sbjct: 53 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 112
Query: 77 LPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPWRRERRQGAA 134
+ + G G + G RG PAG G +G+ G P
Sbjct: 113 QMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNP-GEPGEPGVSGPMG 171
Query: 135 TRGPSRGPG--GERRVCVRASVAGAR--PSVAGVRG 166
RGP PG G+ + AG R P G RG
Sbjct: 172 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARG 207
Score = 28.5 bits (62), Expect = 3.0
Identities = 38/153 (24%), Positives = 53/153 (34%), Gaps = 14/153 (9%)
Query: 24 PGCTGIRKGDTNKARASSPPPRETRGGPG----GALTLPR------KPPGSGRWLGLAAG 73
PG G + K A +P P+ G PG +T P+ PPG+ + G A
Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 835
Query: 74 TATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGA 133
S+ PG + G A G G P GR G P +
Sbjct: 836 VGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP--GRAGEPGLQGPAGPPGEKGEPGDD 893
Query: 134 ATRGPSRGPGGERRVCVRASVAGARPSVAGVRG 166
G + GP G + + + + G P G RG
Sbjct: 894 GPSG-AEGPPGPQGLAGQRGIVGL-PGQRGERG 924
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 37.7 bits (86), Expect = 0.005
Identities = 50/158 (31%), Positives = 55/158 (34%), Gaps = 36/158 (22%)
Query: 3 LPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKA---RASSPPPRETRGGP-----GGA 54
LP +P L + R PGC R + R P R R G G
Sbjct: 59 LPARPPGALGSVLRPLRAR--PGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSP 116
Query: 55 LTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPA---AGSRGEPAGG- 110
PR PG L LA G A PGV R QRPG G G P GG
Sbjct: 117 QPAPRPAPGRSSALALAGGAA-------PGVA----RAQRPGGSGGRSHPGGPGSPRGGG 165
Query: 111 ------RGCCTAEGSSCGHPWRRERRQGAATRGPSRGP 142
RG A+G G P R R A TRG + P
Sbjct: 166 TVGPGDRGPAAADG---GRPQRTVR--AAETRGAAAAP 198
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 37.7 bits (86), Expect = 0.005
Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 18 PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77
P P PG G R GD S P PR +G PG PPGS G A T
Sbjct: 1200 PGPVGIPGLKGER-GDPGSPGISPPGPRGKKGPPG--------PPGSSGPPGPAGATGRA 1250
Query: 78 PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHP 124
P + P ++G PG G+ G P G E CG P
Sbjct: 1251 PKDI-PDPGPPGDQGP-PGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLP 1297
Score = 32.3 bits (72), Expect = 0.21
Identities = 37/148 (25%), Positives = 48/148 (32%), Gaps = 22/148 (14%)
Query: 18 PRPAWAPGCTGIR--------KGDTNKARASSPP----------PRETRGGPGGALTLPR 59
P P PG TG+R GD + + PP P+ +G P P
Sbjct: 1026 PGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFG-PP 1084
Query: 60 KPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG-GRGCCTAEG 118
P G G PG+Q R RPG ++G G P G +
Sbjct: 1085 GPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQP 1144
Query: 119 SSCGHPWRRERRQGAATRGPS--RGPGG 144
G P R + GP +GP G
Sbjct: 1145 GEMGDPGPRGLQGDPGIPGPPGIKGPSG 1172
Score = 27.3 bits (59), Expect = 6.7
Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 23 APGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLC 82
A GC G + K + P R RG G PPG + + + T
Sbjct: 925 AEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAI-----GPPGDEGEMAIISQKGTPGEPGP 979
Query: 83 PGVQA-SRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHP 124
PG ERG + G G RGEP G G E G P
Sbjct: 980 PGDDGFPGERGDK-GTPGMQGRRGEPGRYGPPGFHRGEPGEKGQP 1023
>gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens]
Length = 438
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 3 LPEQPQVKLSKAAKNPRPAWAPGC-TGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP 61
LP Q Q + ++A+ P+P P C T I+ G A P G G L +P+
Sbjct: 35 LPRQWQSLIEESARRPKPLVDPACITSIQPG----APKGEPHDVAPNGPSAGGLAIPQSS 90
Query: 62 PGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGR 111
S R A G PS G AS + P PAA + P G R
Sbjct: 91 SSSSRPPTRARGA---PSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPR 137
>gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens]
Length = 438
Score = 37.7 bits (86), Expect = 0.005
Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 3 LPEQPQVKLSKAAKNPRPAWAPGC-TGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP 61
LP Q Q + ++A+ P+P P C T I+ G A P G G L +P+
Sbjct: 35 LPRQWQSLIEESARRPKPLVDPACITSIQPG----APKGEPHDVAPNGPSAGGLAIPQSS 90
Query: 62 PGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGR 111
S R A G PS G AS + P PAA + P G R
Sbjct: 91 SSSSRPPTRARGA---PSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPR 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,828,387
Number of Sequences: 37866
Number of extensions: 655268
Number of successful extensions: 3897
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 640
Number of HSP's that attempted gapping in prelim test: 3278
Number of HSP's gapped (non-prelim): 1217
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.