Guide to the Human Genome
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Search of human proteins with 169188544

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
         (173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]           362   e-100
gi|169201345 PREDICTED: hypothetical protein [Homo sapiens]           362   e-100
gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]           362   e-100
gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]            46   1e-05
gi|167614488 TBC1 domain family, member 10B [Homo sapiens]             44   7e-05
gi|145580586 kintoun isoform 2 [Homo sapiens]                          44   9e-05
gi|145580588 kintoun isoform 1 [Homo sapiens]                          44   9e-05
gi|239755027 PREDICTED: hypothetical protein [Homo sapiens]            41   5e-04
gi|239749540 PREDICTED: hypothetical protein [Homo sapiens]            41   5e-04
gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo ...    41   5e-04
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]            41   6e-04
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]            41   6e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      39   0.002
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      39   0.002
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]            39   0.002
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            38   0.004
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            38   0.004
gi|171543895 ataxin 2 [Homo sapiens]                                   38   0.004
gi|91208420 bassoon protein [Homo sapiens]                             38   0.004
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    38   0.005
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    38   0.005
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]         38   0.005
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         38   0.005
gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens]            38   0.005
gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens]            38   0.005

>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score =  362 bits (928), Expect = e-100
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
           MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK
Sbjct: 1   MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60

Query: 61  PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
           PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS
Sbjct: 61  PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120

Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
           CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV
Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173


>gi|169201345 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score =  362 bits (928), Expect = e-100
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
           MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK
Sbjct: 1   MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60

Query: 61  PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
           PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS
Sbjct: 61  PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120

Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
           CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV
Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173


>gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score =  362 bits (928), Expect = e-100
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60
           MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK
Sbjct: 1   MLLPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRK 60

Query: 61  PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120
           PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS
Sbjct: 61  PPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSS 120

Query: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173
           CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV
Sbjct: 121 CGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVRV 173


>gi|239757987 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 445

 Score = 46.2 bits (108), Expect = 1e-05
 Identities = 49/147 (33%), Positives = 55/147 (37%), Gaps = 18/147 (12%)

Query: 18  PRPAWAPGCTGIRKGDTNKARAS-SPPPRETRGGPGGA------LTLPRKPPGS------ 64
           PR   +PG TG+  G  N  R   S  P E  G PGG         LPR  PG       
Sbjct: 86  PRSRVSPGVTGLAVGPGNPKRCQRSGVPYEGPGAPGGQQLRKSRARLPRTRPGREDAAVR 145

Query: 65  GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE---PAGGRGCCTAEGSSC 121
           GR    A   +  P+SL  G  A   +GQ  GA P    RGE   P G  G      S  
Sbjct: 146 GRNRDPAEPGSLRPTSL--GFPARAGQGQVQGAAPGRRLRGEPKTPPGRSGPSGGVRSGA 203

Query: 122 GHPWRRERRQGAATRGPSRGPGGERRV 148
           GH       Q  A      GPG   R+
Sbjct: 204 GHRAATAEHQLGAGFSVRNGPGPPARL 230


>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
          Length = 808

 Score = 43.9 bits (102), Expect = 7e-05
 Identities = 50/188 (26%), Positives = 65/188 (34%), Gaps = 45/188 (23%)

Query: 4   PEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG 63
           PE P+ +L    ++P PA      G+       A A SP   E R  P          PG
Sbjct: 98  PEAPKPQLPSGPESPEPA---AVAGVETSRALAAGADSPKTEEARPSPA---------PG 145

Query: 64  SGRWLGLAAGTATLPSSLCPG-VQASRERGQRPGAIPAAG-----SRGEPAGGRGCCTAE 117
            G   G    T   PS   PG + A      +PG   A+G     + G+  GG G   A 
Sbjct: 146 PGTPTGTPTRT---PSRTAPGALTAKPPLAPKPGTTVASGVTARSASGQVTGGHGAAAAT 202

Query: 118 GSSCGHPWRRERRQGAATRGPSRGPGG--ERRVCV---------------RASVAGARPS 160
            +S G       +      GP  GP G  E  V V                 S +   P 
Sbjct: 203 SASAG-------QAPEDPSGPGTGPSGTCEAPVAVVTVTPAPEPAENSQDLGSTSSLGPG 255

Query: 161 VAGVRGSA 168
           ++G RG A
Sbjct: 256 ISGPRGQA 263


>gi|145580586 kintoun isoform 2 [Homo sapiens]
          Length = 789

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%)

Query: 21  AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69
           A AP  +  R G   +A AS+      P  +R   GG  T      GSG   LG      
Sbjct: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422

Query: 70  --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119
              AAG   +P    PG Q  SR  G  PG++  P+ G    P GG   C +      GS
Sbjct: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479

Query: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149
           S G    RE  +G +   TR  S G GG+R  C
Sbjct: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508


>gi|145580588 kintoun isoform 1 [Homo sapiens]
          Length = 837

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 51/153 (33%), Positives = 63/153 (41%), Gaps = 31/153 (20%)

Query: 21  AWAPGCTGIRKGDTNKARASSPP----PRETRGGPGGALTLPRKPPGSG-RWLG------ 69
           A AP  +  R G   +A AS+      P  +R   GG  T      GSG   LG      
Sbjct: 363 AAAPEESADRSGTDGQACASAREGEAGPARSRAEDGGHDTCVAGAAGSGVTTLGDPEVAP 422

Query: 70  --LAAGTATLPSSLCPGVQ-ASRERGQRPGAI--PAAGSRGEPAGGRGCCTAE-----GS 119
              AAG   +P    PG Q  SR  G  PG++  P+ G    P GG   C +      GS
Sbjct: 423 PPAAAGEERVPK---PGEQDLSRHAGSPPGSVEEPSPGGENSPGGGGSPCLSSRSLAWGS 479

Query: 120 SCGHPWRRERRQGAA---TRGPSRGPGGERRVC 149
           S G    RE  +G +   TR  S G GG+R  C
Sbjct: 480 SAG----RESARGDSSVETREESEGTGGQRSAC 508


>gi|239755027 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 239

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 81  LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
           L PG++ SR  G   G     G++G    G+G     G + G  W R    G  T  P  
Sbjct: 66  LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119

Query: 141 GPGGERRVCVRASVAGARPSVA 162
           GPG ERR C+   V GA+ S +
Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141


>gi|239749540 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 239

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 81  LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
           L PG++ SR  G   G     G++G    G+G     G + G  W R    G  T  P  
Sbjct: 66  LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119

Query: 141 GPGGERRVCVRASVAGARPSVA 162
           GPG ERR C+   V GA+ S +
Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141


>gi|239743690 PREDICTED: hypothetical protein XP_002342947 [Homo
           sapiens]
          Length = 239

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 6/82 (7%)

Query: 81  LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
           L PG++ SR  G   G     G++G    G+G     G + G  W R    G  T  P  
Sbjct: 66  LIPGLEGSRSHGFNLGDSVCVGAQGGDVLGKGTRWTLGRADGS-WERP---GLGT--PRT 119

Query: 141 GPGGERRVCVRASVAGARPSVA 162
           GPG ERR C+   V GA+ S +
Sbjct: 120 GPGAERRPCLPQGVPGAKLSAS 141


>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 330

 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 13/145 (8%)

Query: 24  PGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG-SGRWLGLAAGT----ATLP 78
           PGC    +G + + R ++ P R    G GGA  L ++P    GR    A GT     TLP
Sbjct: 130 PGCPPSPRG-SRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLP 188

Query: 79  SSLCPGVQASRERGQRPGAIPAA---GSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAAT 135
           +   P  + S + G+RPG   AA   G RG    G G  T  G   G  W R  R+    
Sbjct: 189 A---PLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGR-WGRWVRRRVPC 244

Query: 136 RGPSRGPGGERRVCVRASVAGARPS 160
             P   P       + A+  G  P+
Sbjct: 245 PLPGLRPHERAGAALLATCRGNAPT 269


>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 330

 Score = 40.8 bits (94), Expect = 6e-04
 Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 13/145 (8%)

Query: 24  PGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPG-SGRWLGLAAGT----ATLP 78
           PGC    +G + + R ++ P R    G GGA  L ++P    GR    A GT     TLP
Sbjct: 130 PGCPPSPRG-SRQERGANSPGRSGARGCGGAAALQQEPTNFRGRPRPGARGTDPPGRTLP 188

Query: 79  SSLCPGVQASRERGQRPGAIPAA---GSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAAT 135
           +   P  + S + G+RPG   AA   G RG    G G  T  G   G  W R  R+    
Sbjct: 189 A---PLARPSTQPGRRPGLGRAASPLGPRGAGVTGAGPATQGGRDRGR-WGRWVRRRVPC 244

Query: 136 RGPSRGPGGERRVCVRASVAGARPS 160
             P   P       + A+  G  P+
Sbjct: 245 PLPGLRPHERAGAALLATCRGNAPT 269


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 55/181 (30%), Positives = 65/181 (35%), Gaps = 32/181 (17%)

Query: 14  AAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGG-------------ALTLPRK 60
           AA  P P  A G  G++     +    SP P+  +G PGG               T P  
Sbjct: 709 AAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIG 768

Query: 61  PPGSGRWLGLAAGTATLPSSLCPGVQASR----ERGQR----PGAIPAA-GSRGEPAG-G 110
           PPG     G   G    P    PG+   R    ERG+     P   P A G  GEP G G
Sbjct: 769 PPGPAGQPG-DKGEGGAPG--LPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKG 825

Query: 111 RGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARG 170
                 E    G P       G+   GP   PG +     R S  G  P  AG  G ARG
Sbjct: 826 ERGAPGEKGEGGPPGVAGPPGGSGPAGP---PGPQGVKGERGSPGG--PGAAGFPG-ARG 879

Query: 171 V 171
           +
Sbjct: 880 L 880



 Score = 36.2 bits (82), Expect = 0.015
 Identities = 38/126 (30%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 20  PAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP--PGSGRWLGLAAGTATL 77
           PA   G  G  KG   +  A  P       GP GA   P +   PG     G+       
Sbjct: 493 PAGPNGIPG-EKGPAGERGAPGP------AGPRGAAGEPGRDGVPGGPGMRGMPGSPGGP 545

Query: 78  PSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG 137
            S   PG   S+    RPG    +G RG+P G  G    +G+  G P +   R G    G
Sbjct: 546 GSDGKPGPPGSQGESGRPGPPGPSGPRGQP-GVMGFPGPKGND-GAPGKNGERGGPGGPG 603

Query: 138 PSRGPG 143
           P   PG
Sbjct: 604 PQGPPG 609



 Score = 36.2 bits (82), Expect = 0.015
 Identities = 41/134 (30%), Positives = 55/134 (41%), Gaps = 26/134 (19%)

Query: 23   APGCTGIR--KGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLA--------A 72
            APG  G+   KGD  +       P E +G PG      + PPG+   LG+A        A
Sbjct: 913  APGSPGVSGPKGDAGQ-------PGE-KGSPGA-----QGPPGAPGPLGIAGITGARGLA 959

Query: 73   GTATLPSSL-CPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQ 131
            G   +P     PG Q  +    +PGA   +G RG P G +G     G++ G P R     
Sbjct: 960  GPPGMPGPRGSPGPQGVKGESGKPGANGLSGERG-PPGPQGLPGLAGTA-GEPGRDGNPG 1017

Query: 132  GAATRGPSRGPGGE 145
                 G    PGG+
Sbjct: 1018 SDGLPGRDGSPGGK 1031



 Score = 33.5 bits (75), Expect = 0.094
 Identities = 45/147 (30%), Positives = 54/147 (36%), Gaps = 15/147 (10%)

Query: 21  AWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSS 80
           A APG  G  KGD        PP     G PG  L     PPG     G A       ++
Sbjct: 665 AGAPGAPG-GKGDAGAPGERGPPG--LAGAPG--LRGGAGPPGPEGGKGAAGPPGPPGAA 719

Query: 81  LCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSR 140
             PG+Q         G+    G +GEP GG G       + G P +   R      GP  
Sbjct: 720 GTPGLQGMPGERGGLGSPGPKGDKGEP-GGPG-------ADGVPGKDGPRGPTGPIGPP- 770

Query: 141 GPGGERRVCVRASVAGARPSVAGVRGS 167
           GP G+          G  P +AG RGS
Sbjct: 771 GPAGQPGDKGEGGAPGL-PGIAGPRGS 796



 Score = 33.1 bits (74), Expect = 0.12
 Identities = 49/171 (28%), Positives = 61/171 (35%), Gaps = 26/171 (15%)

Query: 18   PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAA--GTA 75
            P P    G +G R        A +P P  +RG PG     PR   G     G A   G  
Sbjct: 1052 PGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGP--QGPRGDKGETGERGAAGIKGHR 1109

Query: 76   TLPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPW-------- 125
              P +  PG   S     + GAI + G  G   P G  G    +G+S GHP         
Sbjct: 1110 GFPGN--PGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTS-GHPGPIGPPGPR 1166

Query: 126  --RRERRQGAATRGPSR----GPGGERRVCVRASVAGARPSVAGVRGSARG 170
              R ER    +   P +    GP G    C     A A   +AG+ G   G
Sbjct: 1167 GNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAA---IAGIGGEKAG 1214



 Score = 32.3 bits (72), Expect = 0.21
 Identities = 41/143 (28%), Positives = 47/143 (32%), Gaps = 17/143 (11%)

Query: 18  PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGG----------ALTLPRKPPGSGRW 67
           P P+   G  G+      K    +P     RGGPGG            T P+ PPG    
Sbjct: 566 PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGP 625

Query: 68  LGLAAGTATL-PSSL--CPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEG--SS 120
            G    T    P  L   PG         +PG     G  G P   GG+G   A G    
Sbjct: 626 GGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGP 685

Query: 121 CGHPWRRERRQGAATRGPSRGPG 143
            G       R GA   GP  G G
Sbjct: 686 PGLAGAPGLRGGAGPPGPEGGKG 708



 Score = 30.8 bits (68), Expect = 0.61
 Identities = 38/152 (25%), Positives = 50/152 (32%), Gaps = 21/152 (13%)

Query: 23  APGCTGIRKGDTNKARASSPPPRETRGGPGG----ALTLPRKPPGSGRWLGLAAGTATLP 78
           APG  G R     + R   P     RG  G         P  PPG+  + G       + 
Sbjct: 295 APGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVG 354

Query: 79  SSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGP 138
            +  PG   +  +   PG    AG++G P              G P       G    GP
Sbjct: 355 PAGSPGSNGAPGQRGEPGPQGHAGAQGPP--------------GPPGINGSPGGKGEMGP 400

Query: 139 SRGPGGERRVCVRA--SVAGARPSVAGVRGSA 168
           +  PG    +  R     AGA     G+RG A
Sbjct: 401 AGIPGAPGLMGARGPPGPAGAN-GAPGLRGGA 431


>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%)

Query: 32  GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83
           GD N   ASSPP R       T   P G  + PR  PG   GR LG A GT   P  L P
Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185

Query: 84  GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139
            +Q  R  +  +R      AG  +R  P+  R      GS    P   +  + +  +G  
Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244

Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166
           R  G ER   V  +  G R  + G+ G
Sbjct: 245 RAAGAER---VLNNGRGPRSRLPGLAG 268


>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%)

Query: 32  GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83
           GD N   ASSPP R       T   P G  + PR  PG   GR LG A GT   P  L P
Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185

Query: 84  GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139
            +Q  R  +  +R      AG  +R  P+  R      GS    P   +  + +  +G  
Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244

Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166
           R  G ER   V  +  G R  + G+ G
Sbjct: 245 RAAGAER---VLDNGRGPRSRLPGLAG 268


>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 460

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 47/147 (31%), Positives = 60/147 (40%), Gaps = 17/147 (11%)

Query: 32  GDTNKARASSPPPR------ETRGGPGGALTLPRKPPGS--GRWLGLAAGTATLPSSLCP 83
           GD N   ASSPP R       T   P G  + PR  PG   GR LG A GT   P  L P
Sbjct: 127 GDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTGLNP-GLSP 185

Query: 84  GVQASR--ERGQRPGAIPAAG--SRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPS 139
            +Q  R  +  +R      AG  +R  P+  R      GS    P   +  + +  +G  
Sbjct: 186 RLQEPRGHQSARRTDTASRAGWATRRAPSRRRNFGAPRGSRRLRPDAGKFPEASGGKG-Q 244

Query: 140 RGPGGERRVCVRASVAGARPSVAGVRG 166
           R  G ER   V  +  G R  + G+ G
Sbjct: 245 RAAGAER---VLDNGRGPRSRLPGLAG 268


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 44/138 (31%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 17  NPRPAWAPGCTGIRKGDTNKARASSPPPRETRG--------GPGGALTLPRKPPGSGRWL 68
           +P    APG  G R     + R  +P P   RG        GP G  T P  PPG    +
Sbjct: 291 SPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGP-TGPAGPPGFPGAV 349

Query: 69  GLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRE 128
           G              G Q  R     PG   AAG  G P G  G   A+G++ G P    
Sbjct: 350 GAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP-GADGQPGAKGAN-GAPGIAG 407

Query: 129 RRQGAATRGPS--RGPGG 144
                  RGPS  +GPGG
Sbjct: 408 APGFPGARGPSGPQGPGG 425



 Score = 35.8 bits (81), Expect = 0.019
 Identities = 47/151 (31%), Positives = 53/151 (35%), Gaps = 30/151 (19%)

Query: 20   PAWAPGCTGIRKGDTNKARASSPPPRETRG--------------GPGGALTLPRKPPGSG 65
            PA APG  G +     +     P  R  RG              GP GA +  R PPG  
Sbjct: 942  PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGA-SGERGPPGPM 1000

Query: 66   RWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGS---- 119
               GLA           PG + S  R   PG   A G RGE  PAG  G   A G+    
Sbjct: 1001 GPPGLAGPPGESGREGAPGAEGSPGRDGSPG---AKGDRGETGPAGPPGAPGAPGAPGPV 1057

Query: 120  -SCGHPWRRERRQGAATRGP-----SRGPGG 144
               G    R     A   GP     +RGP G
Sbjct: 1058 GPAGKSGDRGETGPAGPAGPVGPVGARGPAG 1088



 Score = 33.9 bits (76), Expect = 0.072
 Identities = 50/167 (29%), Positives = 61/167 (36%), Gaps = 27/167 (16%)

Query: 6   QPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSG 65
           QP  K +  A  P  A APG  G R     +     P P+   G PG         PGS 
Sbjct: 393 QPGAKGANGA--PGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGA--------PGSK 442

Query: 66  RWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPW 125
              G       +     PG   + E G+R       G+RGEP G  G     G   G P 
Sbjct: 443 GDTGAKGEPGPVGVQGPPG--PAGEEGKR-------GARGEP-GPTGLPGPPGER-GGPG 491

Query: 126 RRERRQGAATRGPSRGPGGERRVCVRASVAGA-----RPSVAGVRGS 167
            R         GP +GP GER     A   G+     RP  AG+ G+
Sbjct: 492 SRGFPGADGVAGP-KGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 537



 Score = 30.8 bits (68), Expect = 0.61
 Identities = 46/139 (33%), Positives = 55/139 (39%), Gaps = 24/139 (17%)

Query: 18  PRPAWAPGCTGIR--KGDTNKARASSP-PPRETRGGPG-----GALTLP-----RKPPGS 64
           P P  APG  G +   G+  +  AS P  PR   G PG     G    P     R PPG 
Sbjct: 190 PGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGP 249

Query: 65  GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124
               GL  GTA L     PG++  R      GA   AG    PAG +G   + G + G P
Sbjct: 250 QGARGL-PGTAGL-----PGMKGHRGFSGLDGAKGDAG----PAGPKGEPGSPGEN-GAP 298

Query: 125 WRRERRQGAATRGPSRGPG 143
            +   R     RG    PG
Sbjct: 299 GQMGPRGLPGERGRPGAPG 317



 Score = 30.8 bits (68), Expect = 0.61
 Identities = 52/185 (28%), Positives = 60/185 (32%), Gaps = 41/185 (22%)

Query: 18  PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG--------GALTLPRK--------- 60
           P PA   G  G    D  K  A +P    ++G PG        GA  LP           
Sbjct: 691 PGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGP 750

Query: 61  -----PPGSGRWLGLAA-----GTATLPSSLCPGVQASRERGQRPGAIPAAGSRGE---- 106
                 PG     GL       G A  P     G           GA  A G RGE    
Sbjct: 751 KGADGSPGKDGVRGLTGPIGPPGPAGAPGD--KGESGPSGPAGPTGARGAPGDRGEPGPP 808

Query: 107 -PAGGRGCCTAEG--SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAG 163
            PAG  G   A+G   + G P     +  A   GP+ GP G           GA+    G
Sbjct: 809 GPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA-GPAGPPGPIGNVGAPGAK----G 863

Query: 164 VRGSA 168
            RGSA
Sbjct: 864 ARGSA 868


>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%)

Query: 65  GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118
           G WL +  G  A  P+   P  +A   R  R  A+PA  +RG    PAGG+  G   A G
Sbjct: 47  GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105

Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172
                P RR RR   A R P   PG       R S+  A P +   +G   G R
Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152



 Score = 27.7 bits (60), Expect = 5.2
 Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 33/148 (22%)

Query: 12  SKAAKNP--RPAWAP-----GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGS 64
           ++AA+ P  RPA          +G  +    + R   P PR  R  PG   +L    P  
Sbjct: 82  ARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLL 141

Query: 65  GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG----GRGCCTAEGSS 120
            R  G  +G                 RG R G+  + G      G      G  T  GSS
Sbjct: 142 TREKGGRSG----------------RRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSS 185

Query: 121 CG------HPWRRERRQGAATRGPSRGP 142
            G         RRERRQ +  R     P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAP 213


>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%)

Query: 65  GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118
           G WL +  G  A  P+   P  +A   R  R  A+PA  +RG    PAGG+  G   A G
Sbjct: 47  GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105

Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172
                P RR RR   A R P   PG       R S+  A P +   +G   G R
Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152



 Score = 27.7 bits (60), Expect = 5.2
 Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 33/148 (22%)

Query: 12  SKAAKNP--RPAWAP-----GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGS 64
           ++AA+ P  RPA          +G  +    + R   P PR  R  PG   +L    P  
Sbjct: 82  ARAARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLL 141

Query: 65  GRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG----GRGCCTAEGSS 120
            R  G  +G                 RG R G+  + G      G      G  T  GSS
Sbjct: 142 TREKGGRSG----------------RRGDRGGSGWSHGHTARVGGTGDSSAGLTTFPGSS 185

Query: 121 CG------HPWRRERRQGAATRGPSRGP 142
            G         RRERRQ +  R     P
Sbjct: 186 RGGFSGREEEPRRERRQPSLQRSTPPAP 213


>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 237

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 39/114 (34%), Positives = 48/114 (42%), Gaps = 14/114 (12%)

Query: 65  GRWLGLAAGT-ATLPSSLCPGVQASRERGQRPGAIPAAGSRG---EPAGGR--GCCTAEG 118
           G WL +  G  A  P+   P  +A   R  R  A+PA  +RG    PAGG+  G   A G
Sbjct: 47  GTWLRVLRGPRAPSPAPALPA-RARPPRENRKRAVPARAARGPPKRPAGGQTGGVEAASG 105

Query: 119 SSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARGVR 172
                P RR RR   A R P   PG       R S+  A P +   +G   G R
Sbjct: 106 EERSQP-RRPRRPPPAPRRPRPAPGR------RKSLYEAAPLLTREKGGRSGRR 152


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 48/145 (33%), Positives = 56/145 (38%), Gaps = 36/145 (24%)

Query: 45   RETRGGPG-GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGS 103
            R  R G G GA  L R P    R L  AA  A        GV+A++ R  RPGA  A   
Sbjct: 879  RRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAA-----AQGVRAAQGRAHRPGAQGAPSH 933

Query: 104  RGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG----PSRGPGGER---------RVCV 150
            R  P G RG             RR RR+ A        P+R   G R         R   
Sbjct: 934  RHRP-GARG-------------RRSRRRAAVALAGGAHPARAALGRRRGGGQAVGARAAH 979

Query: 151  RASVAGARPS---VAGVRGSARGVR 172
            +A +AG +     VA   G A GVR
Sbjct: 980  QARLAGGQVDQVVVAARAGDADGVR 1004



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 63  GSGRWLGLAAGTATLPSSLCPGVQASRERGQRPG-------AIPAAGSRGEPAGGRGCCT 115
           G  R  G AAG   L  ++   VQ  R+R  R G       A+ AAG +G  AGG G   
Sbjct: 826 GGARGGGAAAG-GPLAGAV---VQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRV 881

Query: 116 AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSA 168
             G   GH        GAA     R P  ++R    A+ A A   V   +G A
Sbjct: 882 RHGH--GH--------GAAVL--QRAPCRQQRHLAPAAAAAAAQGVRAAQGRA 922


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 48/145 (33%), Positives = 56/145 (38%), Gaps = 36/145 (24%)

Query: 45   RETRGGPG-GALTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGS 103
            R  R G G GA  L R P    R L  AA  A        GV+A++ R  RPGA  A   
Sbjct: 879  RRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAA-----AQGVRAAQGRAHRPGAQGAPSH 933

Query: 104  RGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRG----PSRGPGGER---------RVCV 150
            R  P G RG             RR RR+ A        P+R   G R         R   
Sbjct: 934  RHRP-GARG-------------RRSRRRAAVALAGGAHPARAALGRRRGGGQAVGARAAH 979

Query: 151  RASVAGARPS---VAGVRGSARGVR 172
            +A +AG +     VA   G A GVR
Sbjct: 980  QARLAGGQVDQVVVAARAGDADGVR 1004



 Score = 29.3 bits (64), Expect = 1.8
 Identities = 37/113 (32%), Positives = 46/113 (40%), Gaps = 23/113 (20%)

Query: 63  GSGRWLGLAAGTATLPSSLCPGVQASRERGQRPG-------AIPAAGSRGEPAGGRGCCT 115
           G  R  G AAG   L  ++   VQ  R+R  R G       A+ AAG +G  AGG G   
Sbjct: 826 GGARGGGAAAG-GPLAGAV---VQRMRQRRVRAGRRRVGARAVAAAGRQGAGAGGGGRRV 881

Query: 116 AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSA 168
             G   GH        GAA     R P  ++R    A+ A A   V   +G A
Sbjct: 882 RHGH--GH--------GAAVL--QRAPCRQQRHLAPAAAAAAAQGVRAAQGRA 922


>gi|171543895 ataxin 2 [Homo sapiens]
          Length = 1313

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 38/115 (33%), Positives = 42/115 (36%), Gaps = 20/115 (17%)

Query: 14  AAKNPRPAWAPGCTGIRKGDTNKARASSPPPRE----TRGGPGGALTLPRKPPGSGRWLG 69
           AA  P P+ AP   G        +R SSPP       + G  GGA       PGS R LG
Sbjct: 45  AAPGPYPSAAPPPPG---PGPPPSRQSSPPSASDCFGSNGNGGGAFR-----PGSRRLLG 96

Query: 70  LAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124
           L          L P           PGA PAA +R  P G R      G S   P
Sbjct: 97  LGGPPRPFVVLLLPLAS--------PGAPPAAPTRASPLGARASPPRSGVSLARP 143


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 41/137 (29%), Positives = 51/137 (37%), Gaps = 15/137 (10%)

Query: 43  PPRETRGGPG-----GALTLPRKPPGSGRW--LGLAAGTATLPSSLCPGVQASRERGQRP 95
           PP     GPG     GA   P  P G G+    G A  TA  P    PG       G  P
Sbjct: 17  PPGGAGPGPGPGPGPGAGKPPSAPAGGGQLPAAGAARSTAVPP---VPGPGPGPGPGPGP 73

Query: 96  GAIPAAGSRGEPAGGRGCCT-----AEGSSCGHPWRRERRQGAATRGPSRGPGGERRVCV 150
           G+        EP G +   +     A  ++ GH   RE R        + GP    +V  
Sbjct: 74  GSTSRRLDPKEPLGNQRAASPTPKQASATTPGHESPRETRAQGPAGQEADGPRRTLQVDS 133

Query: 151 RASVAGARPSVAGVRGS 167
           R   +G  PSV+  RGS
Sbjct: 134 RTQRSGRSPSVSPDRGS 150



 Score = 32.3 bits (72), Expect = 0.21
 Identities = 28/97 (28%), Positives = 34/97 (35%), Gaps = 19/97 (19%)

Query: 40  SSPPPRETRGGPGGALTLPR------------KPPGSGRWLGLAAGTATLPSSLCPGVQA 87
           S  P  +T+G P  +   P+            KP GSG   G A G  T P        A
Sbjct: 366 SVQPEADTQGQPAPSKGTPKIVFNDASKEAGPKPLGSGPGPGPAPGAKTEPG-------A 418

Query: 88  SRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124
               G  PGA+P  G    P  GR    A   +   P
Sbjct: 419 RMGPGSGPGALPKTGGTTSPKHGRAEHQAASKAAAKP 455



 Score = 30.8 bits (68), Expect = 0.61
 Identities = 43/166 (25%), Positives = 65/166 (39%), Gaps = 24/166 (14%)

Query: 6    QPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSG 65
            QPQ++  +AA  P+ + +P    I  G      A+S  P+  +   G  L  P++     
Sbjct: 3744 QPQLQGRQAAPGPQQSQSPSSRQIPSG------AASRQPQTQQQQQGLGLQPPQQALTQA 3797

Query: 66   RWLGLAAGTATLPSSLCPGVQASRERGQ-RPGAIPAAGSRGEPAGGRGCCTAEGSSCGHP 124
            R         + P++      AS+  G+ +PG   A G   +PAG        GS     
Sbjct: 3798 R-----LQQQSQPTTRGSAPAASQPAGKPQPGPSTATGP--QPAGPPRAEQTNGSKGTAK 3850

Query: 125  WRRERRQGAATRGPSRGPGGERRVCVRASVAGARPSVAGVRGSARG 170
              ++ R   A   P  GP G +        AGARP   G  G+  G
Sbjct: 3851 APQQGRAPQAQPAPGPGPAGVK--------AGARP--GGTPGAPAG 3886



 Score = 26.9 bits (58), Expect = 8.8
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 2/57 (3%)

Query: 4    PEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKA--RASSPPPRETRGGPGGALTLP 58
            P +P++ +  A + P P   P       G    A      PP     GG  GAL+ P
Sbjct: 2296 PSRPEMPVGAAREEPLPTTTPAAIKEAAGAPAPAPLAGQKPPADAAPGGGSGALSRP 2352


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 48/156 (30%), Positives = 51/156 (32%), Gaps = 17/156 (10%)

Query: 18  PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77
           P PA APG  G +             P   RG PG        PPG     G A      
Sbjct: 212 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG--------PPGKPGDDGEAGKPGKA 263

Query: 78  PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHPWRRERRQGAAT 135
                PG Q +R     PG     G RG P   G +G   A G   G             
Sbjct: 264 GERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK-GESGSPGENGSPGP 322

Query: 136 RGPSRGPGGERRVCVRASVAGAR-----PSVAGVRG 166
            GP RG  GER     A  AGAR     P  AG  G
Sbjct: 323 MGP-RGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 357



 Score = 33.9 bits (76), Expect = 0.072
 Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 25  GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLCPG 84
           G  G R  D     A  P P    GGPG         PG+    G A  T         G
Sbjct: 339 GAAGARGNDGQPGPAGPPGPVGPAGGPGF--------PGAPGAKGEAGPTGARGPE---G 387

Query: 85  VQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGG 144
            Q  R     PG+   AG+ G P G  G   A+GS+ G P           RGP  GP G
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNP-GTDGIPGAKGSA-GAPGIAGAPGFPGPRGPP-GPQG 444

Query: 145 ERRVCVRASVAGARPSVAGVRG 166
                      G  P +AG +G
Sbjct: 445 ATGPLGPKGQTG-EPGIAGFKG 465



 Score = 32.3 bits (72), Expect = 0.21
 Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 8/156 (5%)

Query: 18  PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG-GALTLPRKPPGSGRWLGLAAGTAT 76
           P P    G  G R    +K    +P PR   G PG      P  PPG     GL    A 
Sbjct: 122 PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 181

Query: 77  LPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPWRRERRQGAA 134
             +          + G   G +   G RG   PAG  G    +G+  G P          
Sbjct: 182 QMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNP-GEPGEPGVSGPMG 240

Query: 135 TRGPSRGPG--GERRVCVRASVAGAR--PSVAGVRG 166
            RGP   PG  G+     +   AG R  P   G RG
Sbjct: 241 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARG 276



 Score = 28.5 bits (62), Expect = 3.0
 Identities = 38/153 (24%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 24  PGCTGIRKGDTNKARASSPPPRETRGGPG----GALTLPR------KPPGSGRWLGLAAG 73
           PG  G +     K  A +P P+   G PG      +T P+       PPG+  + G A  
Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 904

Query: 74  TATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGA 133
                S+  PG         + G   A G  G P  GR          G P  +      
Sbjct: 905 VGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP--GRAGEPGLQGPAGPPGEKGEPGDD 962

Query: 134 ATRGPSRGPGGERRVCVRASVAGARPSVAGVRG 166
              G + GP G + +  +  + G  P   G RG
Sbjct: 963 GPSG-AEGPPGPQGLAGQRGIVGL-PGQRGERG 993


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 48/156 (30%), Positives = 51/156 (32%), Gaps = 17/156 (10%)

Query: 18  PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77
           P PA APG  G +             P   RG PG        PPG     G A      
Sbjct: 143 PGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPG--------PPGKPGDDGEAGKPGKA 194

Query: 78  PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHPWRRERRQGAAT 135
                PG Q +R     PG     G RG P   G +G   A G   G             
Sbjct: 195 GERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVK-GESGSPGENGSPGP 253

Query: 136 RGPSRGPGGERRVCVRASVAGAR-----PSVAGVRG 166
            GP RG  GER     A  AGAR     P  AG  G
Sbjct: 254 MGP-RGLPGERGRTGPAGAAGARGNDGQPGPAGPPG 288



 Score = 33.9 bits (76), Expect = 0.072
 Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 15/142 (10%)

Query: 25  GCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLCPG 84
           G  G R  D     A  P P    GGPG         PG+    G A  T         G
Sbjct: 270 GAAGARGNDGQPGPAGPPGPVGPAGGPGF--------PGAPGAKGEAGPTGARGPE---G 318

Query: 85  VQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGAATRGPSRGPGG 144
            Q  R     PG+   AG+ G P G  G   A+GS+ G P           RGP  GP G
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNP-GTDGIPGAKGSA-GAPGIAGAPGFPGPRGPP-GPQG 375

Query: 145 ERRVCVRASVAGARPSVAGVRG 166
                      G  P +AG +G
Sbjct: 376 ATGPLGPKGQTG-EPGIAGFKG 396



 Score = 32.3 bits (72), Expect = 0.21
 Identities = 44/156 (28%), Positives = 53/156 (33%), Gaps = 8/156 (5%)

Query: 18  PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPG-GALTLPRKPPGSGRWLGLAAGTAT 76
           P P    G  G R    +K    +P PR   G PG      P  PPG     GL    A 
Sbjct: 53  PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA 112

Query: 77  LPSSLCPGVQASRERGQRPGAIPAAGSRGE--PAGGRGCCTAEGSSCGHPWRRERRQGAA 134
             +          + G   G +   G RG   PAG  G    +G+  G P          
Sbjct: 113 QMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNP-GEPGEPGVSGPMG 171

Query: 135 TRGPSRGPG--GERRVCVRASVAGAR--PSVAGVRG 166
            RGP   PG  G+     +   AG R  P   G RG
Sbjct: 172 PRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARG 207



 Score = 28.5 bits (62), Expect = 3.0
 Identities = 38/153 (24%), Positives = 53/153 (34%), Gaps = 14/153 (9%)

Query: 24  PGCTGIRKGDTNKARASSPPPRETRGGPG----GALTLPR------KPPGSGRWLGLAAG 73
           PG  G +     K  A +P P+   G PG      +T P+       PPG+  + G A  
Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 835

Query: 74  TATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGRGCCTAEGSSCGHPWRRERRQGA 133
                S+  PG         + G   A G  G P  GR          G P  +      
Sbjct: 836 VGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP--GRAGEPGLQGPAGPPGEKGEPGDD 893

Query: 134 ATRGPSRGPGGERRVCVRASVAGARPSVAGVRG 166
              G + GP G + +  +  + G  P   G RG
Sbjct: 894 GPSG-AEGPPGPQGLAGQRGIVGL-PGQRGERG 924


>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
          Length = 261

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 50/158 (31%), Positives = 55/158 (34%), Gaps = 36/158 (22%)

Query: 3   LPEQPQVKLSKAAKNPRPAWAPGCTGIRKGDTNKA---RASSPPPRETRGGP-----GGA 54
           LP +P   L    +  R    PGC   R     +    R   P  R  R G      G  
Sbjct: 59  LPARPPGALGSVLRPLRAR--PGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSP 116

Query: 55  LTLPRKPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPA---AGSRGEPAGG- 110
              PR  PG    L LA G A       PGV     R QRPG        G  G P GG 
Sbjct: 117 QPAPRPAPGRSSALALAGGAA-------PGVA----RAQRPGGSGGRSHPGGPGSPRGGG 165

Query: 111 ------RGCCTAEGSSCGHPWRRERRQGAATRGPSRGP 142
                 RG   A+G   G P R  R   A TRG +  P
Sbjct: 166 TVGPGDRGPAAADG---GRPQRTVR--AAETRGAAAAP 198


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 35/109 (32%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 18   PRPAWAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATL 77
            P P   PG  G R GD      S P PR  +G PG        PPGS    G A  T   
Sbjct: 1200 PGPVGIPGLKGER-GDPGSPGISPPGPRGKKGPPG--------PPGSSGPPGPAGATGRA 1250

Query: 78   PSSLCPGVQASRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHP 124
            P  + P      ++G  PG     G+ G P   G       E   CG P
Sbjct: 1251 PKDI-PDPGPPGDQGP-PGPDGPRGAPGPPGLPGSVDLLRGEPGDCGLP 1297



 Score = 32.3 bits (72), Expect = 0.21
 Identities = 37/148 (25%), Positives = 48/148 (32%), Gaps = 22/148 (14%)

Query: 18   PRPAWAPGCTGIR--------KGDTNKARASSPP----------PRETRGGPGGALTLPR 59
            P P   PG TG+R         GD  +  +  PP          P+  +G P      P 
Sbjct: 1026 PGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFG-PP 1084

Query: 60   KPPGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAG-GRGCCTAEG 118
             P G     G             PG+Q  R    RPG   ++G  G P   G      + 
Sbjct: 1085 GPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQP 1144

Query: 119  SSCGHPWRRERRQGAATRGPS--RGPGG 144
               G P  R  +      GP   +GP G
Sbjct: 1145 GEMGDPGPRGLQGDPGIPGPPGIKGPSG 1172



 Score = 27.3 bits (59), Expect = 6.7
 Identities = 30/105 (28%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 23   APGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPSSLC 82
            A GC G +     K  +  P  R  RG  G        PPG    + + +   T      
Sbjct: 925  AEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAI-----GPPGDEGEMAIISQKGTPGEPGP 979

Query: 83   PGVQA-SRERGQRPGAIPAAGSRGEPA--GGRGCCTAEGSSCGHP 124
            PG      ERG + G     G RGEP   G  G    E    G P
Sbjct: 980  PGDDGFPGERGDK-GTPGMQGRRGEPGRYGPPGFHRGEPGEKGQP 1023


>gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens]
          Length = 438

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 3   LPEQPQVKLSKAAKNPRPAWAPGC-TGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP 61
           LP Q Q  + ++A+ P+P   P C T I+ G    A    P      G   G L +P+  
Sbjct: 35  LPRQWQSLIEESARRPKPLVDPACITSIQPG----APKGEPHDVAPNGPSAGGLAIPQSS 90

Query: 62  PGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGR 111
             S R    A G    PS    G  AS  +   P   PAA +   P G R
Sbjct: 91  SSSSRPPTRARGA---PSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPR 137


>gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens]
          Length = 438

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 34/110 (30%), Positives = 44/110 (40%), Gaps = 8/110 (7%)

Query: 3   LPEQPQVKLSKAAKNPRPAWAPGC-TGIRKGDTNKARASSPPPRETRGGPGGALTLPRKP 61
           LP Q Q  + ++A+ P+P   P C T I+ G    A    P      G   G L +P+  
Sbjct: 35  LPRQWQSLIEESARRPKPLVDPACITSIQPG----APKGEPHDVAPNGPSAGGLAIPQSS 90

Query: 62  PGSGRWLGLAAGTATLPSSLCPGVQASRERGQRPGAIPAAGSRGEPAGGR 111
             S R    A G    PS    G  AS  +   P   PAA +   P G R
Sbjct: 91  SSSSRPPTRARGA---PSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPR 137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,828,387
Number of Sequences: 37866
Number of extensions: 655268
Number of successful extensions: 3897
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 640
Number of HSP's that attempted gapping in prelim test: 3278
Number of HSP's gapped (non-prelim): 1217
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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