Guide to the Human Genome
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Name: LOC100131630 Sequence: fasta or formatted (132aa) NCBI GI: 169179745
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {132aa} PREDICTED: hypothetical protein
alt mRNA {132aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          6           1
 C cysteine            3.0          4           2
 D aspartate           4.5          6           1
 E glutamate           3.0          4           1
 F phenylalanine       1.5          2           1
 G glycine            14.4         19           2
 H histidine           0.8          1           1
 I isoleucine          3.0          4           2
 K lysine              3.0          4           1
 L leucine             9.8         13           1
 M methionine          0.8          1           1
 N asparagine          1.5          2           1
 P proline            12.9         17           3
 Q glutamine           5.3          7           2
 R arginine            9.1         12           1
 S serine             15.2         20           3
 T threonine           3.8          5           1
 V valine              2.3          3           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131630          1.000   PREDICTED: hypothetical protein 
LOC100131630          1.000   PREDICTED: hypothetical protein 
GGN                   0.040   gametogenetin 
NCOA2                 0.032   nuclear receptor coactivator 2 
LOC100293486          0.032   PREDICTED: similar to hCG2041452 
LOC100291379          0.032   PREDICTED: hypothetical protein XP_002346556 
LOC100288960          0.032   PREDICTED: hypothetical protein XP_002342392 
LOC100292122          0.032   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.032   PREDICTED: hypothetical protein XP_002344191 
C20orf160             0.032   hypothetical protein LOC140706 
GLCCI1                0.032   glucocorticoid induced transcript 1 
LOC100292589          0.028   PREDICTED: hypothetical protein 
LOC100290121          0.028   PREDICTED: hypothetical protein XP_002346879 
LOC100289406          0.028   PREDICTED: hypothetical protein XP_002342721 
LOC100129122          0.028   PREDICTED: hypothetical protein 
LOC100129122          0.028   PREDICTED: hypothetical protein 
LOC100129122          0.028   PREDICTED: hypothetical protein 
ZNF281                0.028   zinc finger protein 281 
C10orf47              0.028   hypothetical protein LOC254427 
LOC100292931          0.028   PREDICTED: similar to protein phosphatase 2A 48 kDa...
LOC100293260          0.028   PREDICTED: similar to hCG1997308 
LOC100291496          0.028   PREDICTED: hypothetical protein XP_002346694 
LOC100287627          0.028   PREDICTED: hypothetical protein XP_002342142 
MESP2                 0.028   mesoderm posterior 2 homolog 
LOC100292037          0.024   PREDICTED: hypothetical protein XP_002344729 
LOC100290821          0.024   PREDICTED: hypothetical protein XP_002347416 
LOC100287334          0.024   PREDICTED: hypothetical protein XP_002343201 
REXO1                 0.024   transcription elongation factor B polypeptide 3 bin...
SPRN                  0.024   shadow of prion protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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