Guide to the Human Genome
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Name: LOC100287627 Sequence: fasta or formatted (173aa) NCBI GI: 239741243
Description:

PREDICTED: hypothetical protein XP_002342142

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         18           3
 C cysteine            1.7          3           1
 D aspartate           1.2          2           1
 E glutamate           6.9         12           4
 F phenylalanine       1.2          2           1
 G glycine             9.8         17           1
 H histidine           1.2          2           1
 I isoleucine          3.5          6           1
 K lysine              3.5          6           1
 L leucine             8.1         14           2
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline             8.7         15           3
 Q glutamine           4.6          8           1
 R arginine            8.1         14           2
 S serine             14.5         25           3
 T threonine           4.6          8           1
 V valine              8.1         14           2
 W tryptophan          1.2          2           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342142 
LOC100293260          1.000   PREDICTED: similar to hCG1997308 
LOC100291496          1.000   PREDICTED: hypothetical protein XP_002346694 
ARL6IP4               0.038   SRp25 nuclear protein isoform 1 
LOC100290717          0.038   PREDICTED: hypothetical protein XP_002347797 
GPR179                0.038   GPR158-like 1 
PER1                  0.035   period 1 
ARL6IP4               0.035   SRp25 nuclear protein isoform 4 
ARL6IP4               0.035   SRp25 nuclear protein isoform 2 
FOXA3                 0.035   forkhead box A3 
CASKIN1               0.032   CASK interacting protein 1 
LOC100292348          0.032   PREDICTED: hypothetical protein 
LOC100288054          0.032   PREDICTED: hypothetical protein XP_002343137 
ARL6IP4               0.032   SRp25 nuclear protein isoform 3 
WDR91                 0.025   WD repeat domain 91 
CHGA                  0.025   chromogranin A precursor 
BIN1                  0.025   bridging integrator 1 isoform 7 
BIN1                  0.025   bridging integrator 1 isoform 3 
IGDCC3                0.025   putative neuronal cell adhesion molecule 
MAP7D1                0.025   MAP7 domain containing 1 
LOC389333             0.025   hypothetical protein LOC389333 
LOC645602             0.025   PREDICTED: hypothetical protein 
LOC645602             0.025   PREDICTED: hypothetical protein 
LOC645602             0.025   PREDICTED: hypothetical protein 
MLLT6                 0.025   myeloid/lymphoid or mixed-lineage leukemia (trithora...
TACC2                 0.025   transforming, acidic coiled-coil containing protein...
CLOCK                 0.022   clock 
PHRF1                 0.022   PHD and ring finger domains 1 
ADD1                  0.022   adducin 1 (alpha) isoform c 
ADD1                  0.022   adducin 1 (alpha) isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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