Guide to the Human Genome
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Name: LOC100129122 Sequence: fasta or formatted (142aa) NCBI GI: 239744865
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {142aa} PREDICTED: hypothetical protein
alt mRNA {142aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         11           1
 C cysteine            1.4          2           1
 D aspartate           4.2          6           3
 E glutamate           2.8          4           1
 F phenylalanine       2.1          3           1
 G glycine            14.1         20           1
 H histidine           2.8          4           2
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             7.0         10           1
 M methionine          1.4          2           1
 N asparagine          0.7          1           1
 P proline            10.6         15           2
 Q glutamine           5.6          8           1
 R arginine           17.6         25           2
 S serine              9.9         14           2
 T threonine           4.2          6           1
 V valine              4.2          6           1
 W tryptophan          2.1          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129122          1.000   PREDICTED: hypothetical protein 
LOC100129122          1.000   PREDICTED: hypothetical protein 
ZNF219                0.036   zinc finger protein 219 
ZNF219                0.036   zinc finger protein 219 
ZNF219                0.036   zinc finger protein 219 
LOC100131455          0.033   PREDICTED: hypothetical protein 
LOC100131455          0.033   PREDICTED: hypothetical protein 
BBC3                  0.029   BCL2 binding component 3 isoform 1 
LOC100131455          0.029   PREDICTED: hypothetical protein 
CIC                   0.029   capicua homolog 
LOC100291301          0.029   PREDICTED: hypothetical protein XP_002347724 
SRRM2                 0.029   splicing coactivator subunit SRm300 
SHANK1                0.025   SH3 and multiple ankyrin repeat domains 1 
LOC100131630          0.025   PREDICTED: hypothetical protein 
LOC100131630          0.025   PREDICTED: hypothetical protein 
LOC100131630          0.025   PREDICTED: hypothetical protein 
FXR2                  0.025   fragile X mental retardation syndrome related protein...
GAS2L1                0.022   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.022   growth arrest-specific 2 like 1 isoform a 
RPH3A                 0.018   rabphilin 3A homolog isoform 1 
RPH3A                 0.018   rabphilin 3A homolog isoform 2 
REXO1                 0.018   transcription elongation factor B polypeptide 3 bin...
LOC100293604          0.018   PREDICTED: hypothetical protein 
LOC100289721          0.018   PREDICTED: hypothetical protein XP_002347280 
LOC100287837          0.018   PREDICTED: hypothetical protein XP_002343157 
LOC651856             0.018   PREDICTED: similar to hCG2023245 
DLG5                  0.018   discs large homolog 5 
ADAMTS14              0.018   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.018   ADAM metallopeptidase with thrombospondin type 1 mo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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