Guide to the Human Genome
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Name: LOC100292931 Sequence: fasta or formatted (290aa) NCBI GI: 239758164
Description:

PREDICTED: similar to protein phosphatase 2A 48 kDa regulatory subunit

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         21           2
 C cysteine            4.1         12           1
 D aspartate           2.4          7           2
 E glutamate           3.1          9           1
 F phenylalanine       5.5         16           1
 G glycine            12.8         37           2
 H histidine           2.8          8           1
 I isoleucine          0.7          2           1
 K lysine              1.7          5           1
 L leucine             8.6         25           2
 M methionine          1.0          3           1
 N asparagine          1.0          3           1
 P proline            10.7         31           2
 Q glutamine           4.8         14           2
 R arginine           13.1         38           4
 S serine              7.9         23           1
 T threonine           2.8          8           2
 V valine              6.9         20           2
 W tryptophan          1.4          4           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to protein phosphatase 2A 48 kDa... 
PPP2R3B               0.308   protein phosphatase 2, regulatory subunit B'', beta ...
PPP2R3A               0.213   protein phosphatase 2, regulatory subunit B'', alpha...
PPP2R3A               0.213   protein phosphatase 2, regulatory subunit B'', alpha...
KLF2                  0.032   Kruppel-like factor 
LOC388279             0.019   PREDICTED: hypothetical protein 
LOC100293254          0.017   PREDICTED: hypothetical protein 
LOC100289377          0.017   PREDICTED: hypothetical protein 
LOC100289377          0.017   PREDICTED: hypothetical protein XP_002343119 
RASSF5                0.015   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.015   Ras association (RalGDS/AF-6) domain family 5 isofor...
ZDHHC1                0.015   zinc finger, DHHC-type containing 1 
LOC283999             0.015   hypothetical protein LOC283999 
LOC100291807          0.012   PREDICTED: hypothetical protein XP_002345507 
FLJ37078              0.012   hypothetical protein LOC222183 
GPX4                  0.012   glutathione peroxidase 4 isoform C precursor 
LOC100293385          0.012   PREDICTED: hypothetical protein 
LOC100292934          0.012   PREDICTED: hypothetical protein 
LOC100290381          0.012   PREDICTED: hypothetical protein XP_002346884 
LOC100290359          0.012   PREDICTED: hypothetical protein XP_002346414 
LOC100289601          0.012   PREDICTED: hypothetical protein XP_002342725 
LOC646509             0.012   PREDICTED: hypothetical protein 
LOC100287202          0.012   PREDICTED: hypothetical protein XP_002342114 
SRCAP                 0.012   Snf2-related CBP activator protein 
KIAA0368              0.012   KIAA0368 protein 
C1orf65               0.012   hypothetical protein LOC164127 
LOC100131630          0.012   PREDICTED: hypothetical protein 
LOC100293235          0.012   PREDICTED: hypothetical protein 
LOC100131630          0.012   PREDICTED: hypothetical protein 
FAM132B               0.012   PREDICTED: family with sequence similarity 132, mem...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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