Search of human proteins with 169177343

Search of human proteins with 169177343

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169177343 PREDICTED: COBW domain containing 7 [Homo sapiens]
         (247 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169177343 PREDICTED: COBW domain containing 7 [Homo sapiens]       493   e-140
gi|148727351 COBW domain containing 3 [Homo sapiens]                  493   e-140
gi|146231952 COBW domain containing 6 [Homo sapiens]                  488   e-138
gi|33469141 COBW domain-containing protein 2 [Homo sapiens]           486   e-138
gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens]        486   e-137
gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens]        486   e-137
gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens]        438   e-123
gi|119120938 COBW domain containing 5 [Homo sapiens]                  377   e-105
gi|169184311 PREDICTED: similar to COBW domain containing 1 [Hom...   358   2e-99
gi|239752504 PREDICTED: hypothetical protein [Homo sapiens]            56   3e-08
gi|217272894 elongation factor Tu GTP binding domain containing ...    32   0.67 
gi|217272892 elongation factor Tu GTP binding domain containing ...    32   0.67 
gi|169163827 PREDICTED: similar to UPF0634 protein KIAA1641 [Hom...    31   0.87 
gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]        31   0.87 
gi|124517695 ankyrin repeat domain 36B [Homo sapiens]                  31   0.87 
gi|5453726 leucine rich repeat (in FLII) interacting protein 2 i...    29   3.3  
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo...    28   5.6  
gi|154277116 spectrin repeat containing, nuclear envelope 1 isof...    28   5.6  
gi|50658069 phosphodiesterase 4D interacting protein isoform 2 [...    28   5.6  
gi|50658071 phosphodiesterase 4D interacting protein isoform 5 [...    28   5.6  
gi|157311604 phosphodiesterase 4D interacting protein isoform 1 ...    28   5.6  
gi|224831239 integrin alpha M isoform 1 precursor [Homo sapiens]       28   7.4  
gi|88501734 integrin alpha M isoform 2 precursor [Homo sapiens]        28   7.4  
gi|126032338 ryanodine receptor 3 [Homo sapiens]                       28   7.4  
gi|60498973 myelin transcription factor 1-like [Homo sapiens]          28   7.4  
gi|239753333 PREDICTED: actin, beta-like 3 [Homo sapiens]              28   9.6  
gi|239747898 PREDICTED: actin, beta-like 3 [Homo sapiens]              28   9.6  
gi|239741786 PREDICTED: kappa-actin [Homo sapiens]                     28   9.6  
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ...    28   9.6  
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [...    28   9.6  

>gi|169177343 PREDICTED: COBW domain containing 7 [Homo sapiens]
          Length = 247

 Score =  493 bits (1269), Expect = e-140
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
           MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV
Sbjct: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60

Query: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120
           PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP
Sbjct: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120

Query: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180
           HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ
Sbjct: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180

Query: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240
           VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF
Sbjct: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240

Query: 241 KEDQVCT 247
           KEDQVCT
Sbjct: 241 KEDQVCT 247


>gi|148727351 COBW domain containing 3 [Homo sapiens]
          Length = 395

 Score =  493 bits (1269), Expect = e-140
 Identities = 247/247 (100%), Positives = 247/247 (100%)

Query: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
           MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV
Sbjct: 149 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 208

Query: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120
           PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP
Sbjct: 209 PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 268

Query: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180
           HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ
Sbjct: 269 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 328

Query: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240
           VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF
Sbjct: 329 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 388

Query: 241 KEDQVCT 247
           KEDQVCT
Sbjct: 389 KEDQVCT 395


>gi|146231952 COBW domain containing 6 [Homo sapiens]
          Length = 395

 Score =  488 bits (1255), Expect = e-138
 Identities = 244/247 (98%), Positives = 246/247 (99%)

Query: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
           MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV
Sbjct: 149 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 208

Query: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120
           PEEDVKKLRTT+RSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP
Sbjct: 209 PEEDVKKLRTTLRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 268

Query: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180
           HLDQSIVTITF+VPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ
Sbjct: 269 HLDQSIVTITFDVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 328

Query: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240
           VIVQGVHEL DLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF
Sbjct: 329 VIVQGVHELCDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 388

Query: 241 KEDQVCT 247
           KEDQVCT
Sbjct: 389 KEDQVCT 395


>gi|33469141 COBW domain-containing protein 2 [Homo sapiens]
          Length = 395

 Score =  486 bits (1252), Expect = e-138
 Identities = 243/247 (98%), Positives = 244/247 (98%)

Query: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
           MFWVDAELGSDIYLDGIITIVDSKYGLKHL EEKPDGLINEATRQVALAD ILINKTDLV
Sbjct: 149 MFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINKTDLV 208

Query: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120
           PEEDVKKLR TIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP
Sbjct: 209 PEEDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 268

Query: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180
           HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ
Sbjct: 269 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 328

Query: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240
           VIVQGVHELYDLEETPVSWKDDTERTNRLVL+GRNLDKDILKQLFIATVTETEKQWTTHF
Sbjct: 329 VIVQGVHELYDLEETPVSWKDDTERTNRLVLLGRNLDKDILKQLFIATVTETEKQWTTHF 388

Query: 241 KEDQVCT 247
           KEDQVCT
Sbjct: 389 KEDQVCT 395


>gi|223941776 COBW domain containing 1 isoform 2 [Homo sapiens]
          Length = 359

 Score =  486 bits (1250), Expect = e-137
 Identities = 243/247 (98%), Positives = 245/247 (99%)

Query: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
           MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALAD ILINKTDLV
Sbjct: 113 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLV 172

Query: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120
           PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP
Sbjct: 173 PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 232

Query: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180
           HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ
Sbjct: 233 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 292

Query: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240
           VIVQGVHELYDLEETPVSWKDDTERTNRLVL+GRNLDKDILKQLFIATVTETEKQWTT F
Sbjct: 293 VIVQGVHELYDLEETPVSWKDDTERTNRLVLLGRNLDKDILKQLFIATVTETEKQWTTRF 352

Query: 241 KEDQVCT 247
           +EDQVCT
Sbjct: 353 QEDQVCT 359


>gi|126722884 COBW domain containing 1 isoform 1 [Homo sapiens]
          Length = 395

 Score =  486 bits (1250), Expect = e-137
 Identities = 243/247 (98%), Positives = 245/247 (99%)

Query: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
           MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALAD ILINKTDLV
Sbjct: 149 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLV 208

Query: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120
           PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP
Sbjct: 209 PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 268

Query: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180
           HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ
Sbjct: 269 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 328

Query: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240
           VIVQGVHELYDLEETPVSWKDDTERTNRLVL+GRNLDKDILKQLFIATVTETEKQWTT F
Sbjct: 329 VIVQGVHELYDLEETPVSWKDDTERTNRLVLLGRNLDKDILKQLFIATVTETEKQWTTRF 388

Query: 241 KEDQVCT 247
           +EDQVCT
Sbjct: 389 QEDQVCT 395


>gi|223941779 COBW domain containing 1 isoform 3 [Homo sapiens]
          Length = 376

 Score =  438 bits (1127), Expect = e-123
 Identities = 224/247 (90%), Positives = 226/247 (91%), Gaps = 19/247 (7%)

Query: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
           MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALAD ILINKTDLV
Sbjct: 149 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINKTDLV 208

Query: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120
           PEEDVKKLRTTIRSINGLGQILETQRS                   SLQKKLQHVPGTQP
Sbjct: 209 PEEDVKKLRTTIRSINGLGQILETQRS-------------------SLQKKLQHVPGTQP 249

Query: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180
           HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ
Sbjct: 250 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 309

Query: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240
           VIVQGVHELYDLEETPVSWKDDTERTNRLVL+GRNLDKDILKQLFIATVTETEKQWTT F
Sbjct: 310 VIVQGVHELYDLEETPVSWKDDTERTNRLVLLGRNLDKDILKQLFIATVTETEKQWTTRF 369

Query: 241 KEDQVCT 247
           +EDQVCT
Sbjct: 370 QEDQVCT 376


>gi|119120938 COBW domain containing 5 [Homo sapiens]
          Length = 347

 Score =  377 bits (968), Expect = e-105
 Identities = 199/247 (80%), Positives = 199/247 (80%), Gaps = 48/247 (19%)

Query: 1   MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLV 60
           MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATR                
Sbjct: 149 MFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATR---------------- 192

Query: 61  PEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQP 120
                        SINGLGQILETQRS                   SLQKKLQHVPGTQP
Sbjct: 193 -------------SINGLGQILETQRS-------------------SLQKKLQHVPGTQP 220

Query: 121 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 180
           HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ
Sbjct: 221 HLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQ 280

Query: 181 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 240
           VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF
Sbjct: 281 VIVQGVHELYDLEETPVSWKDDTERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTHF 340

Query: 241 KEDQVCT 247
           KEDQVCT
Sbjct: 341 KEDQVCT 347


>gi|169184311 PREDICTED: similar to COBW domain containing 1 [Homo
           sapiens]
          Length = 181

 Score =  358 bits (919), Expect = 2e-99
 Identities = 179/181 (98%), Positives = 181/181 (100%)

Query: 27  LKHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 86
           ++HLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR
Sbjct: 1   MRHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQR 60

Query: 87  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 146
           SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI
Sbjct: 61  SRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFI 120

Query: 147 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 206
           QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT
Sbjct: 121 QNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVSWKDDTERT 180

Query: 207 N 207
           N
Sbjct: 181 N 181


>gi|239752504 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 51

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 25/31 (80%), Positives = 27/31 (87%)

Query: 146 IQNLLWEKNVRNKDNHCMEVIRLKGLVSIKD 176
           IQNLLWEKNVRNKDNHCMEVIRLK   ++ D
Sbjct: 11  IQNLLWEKNVRNKDNHCMEVIRLKVQFTVAD 41


>gi|217272894 elongation factor Tu GTP binding domain containing 2
           isoform b [Homo sapiens]
          Length = 937

 Score = 31.6 bits (70), Expect = 0.67
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 15  DGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTD-------LVPEEDVKK 67
           DG++  +D+  G+   TE     LI  A ++  LA  + INK D       L P +   K
Sbjct: 188 DGVVLFIDAAEGVMLNTER----LIKHAVQE-RLAVTVCINKIDRLILELKLPPTDAYYK 242

Query: 68  LRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 102
           LR  +  +NGL  +  T  + + LS +L    F S
Sbjct: 243 LRHIVDEVNGLISMYSTDENLI-LSPLLGNVCFSS 276


>gi|217272892 elongation factor Tu GTP binding domain containing 2
           isoform a [Homo sapiens]
          Length = 972

 Score = 31.6 bits (70), Expect = 0.67
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 13/95 (13%)

Query: 15  DGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTD-------LVPEEDVKK 67
           DG++  +D+  G+   TE     LI  A ++  LA  + INK D       L P +   K
Sbjct: 223 DGVVLFIDAAEGVMLNTER----LIKHAVQE-RLAVTVCINKIDRLILELKLPPTDAYYK 277

Query: 68  LRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 102
           LR  +  +NGL  +  T  + + LS +L    F S
Sbjct: 278 LRHIVDEVNGLISMYSTDENLI-LSPLLGNVCFSS 311


>gi|169163827 PREDICTED: similar to UPF0634 protein KIAA1641 [Homo
           sapiens]
          Length = 475

 Score = 31.2 bits (69), Expect = 0.87
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 150 LWEKNVRNKDNHC----MEVIRLKGLVSIKDK----SQQVIVQGVHELYDLEE 194
           LW++ ++ KDNHC    +++ +LK   S+  K     +++  Q  HE+ +LE+
Sbjct: 37  LWKRLIKLKDNHCEQLRVKIRKLKNKASVLQKRISEKEEIKSQLKHEILELEK 89


>gi|239741684 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
          Length = 1524

 Score = 31.2 bits (69), Expect = 0.87
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 150  LWEKNVRNKDNHC----MEVIRLKGLVSIKDK----SQQVIVQGVHELYDLEE 194
            LW++ ++ KDNHC    +++ +LK   S+  K     +++  Q  HE+ +LE+
Sbjct: 987  LWKRLIKLKDNHCEQLRVKIRKLKNKASVLQKRISEKEEIKSQLKHEILELEK 1039


>gi|124517695 ankyrin repeat domain 36B [Homo sapiens]
          Length = 1121

 Score = 31.2 bits (69), Expect = 0.87
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 8/53 (15%)

Query: 150 LWEKNVRNKDNHC----MEVIRLKGLVSIKDK----SQQVIVQGVHELYDLEE 194
           LW++ ++ KDNHC    +++ +LK   S+  K     +++  Q  HE+ +LE+
Sbjct: 584 LWKRLIKLKDNHCEQLRVKIRKLKNKASVLQKRISEKEEIKSQLKHEILELEK 636


>gi|5453726 leucine rich repeat (in FLII) interacting protein 2
           isoform 1 [Homo sapiens]
          Length = 721

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 19/108 (17%)

Query: 138 KEEHLNMFIQNLLWE--KNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEET 195
           +++H+   +Q+ + E  + +R +D           L+  K + QQ I     E++DL+ET
Sbjct: 430 RQKHMCSVLQHKMEELKEGLRQRDE----------LIEEKQRMQQKIDTMTKEVFDLQET 479

Query: 196 PVSWKDD----TERTNRLVLIGRNLDKDILKQLFIATVTETEKQWTTH 239
            + WKD      E+    +   RN ++D+L++  +A + ET K    H
Sbjct: 480 -LLWKDKKIGALEKQKEYIACLRN-ERDMLRE-ELADLQETVKTGEKH 524


>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
            [Homo sapiens]
          Length = 8749

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 139  EEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVS 198
            E  LNM I     E+ +R+ +     VI+ + L ++K+    ++   VH    LE     
Sbjct: 2685 EVKLNMAIGK--GEQALRSSNKEGQRVIQTQ-LETLKEVWADIMSSSVHAQSTLESVISQ 2741

Query: 199  WKDDTERTNRLVLIGRNLDKDI 220
            W D  ER N+L     ++D+ I
Sbjct: 2742 WNDYVERKNQLEQWMESVDQKI 2763


>gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1
            [Homo sapiens]
          Length = 8797

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 139  EEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLVSIKDKSQQVIVQGVHELYDLEETPVS 198
            E  LNM I     E+ +R+ +     VI+ + L ++K+    ++   VH    LE     
Sbjct: 2678 EVKLNMAIGK--GEQALRSSNKEGQRVIQTQ-LETLKEVWADIMSSSVHAQSTLESVISQ 2734

Query: 199  WKDDTERTNRLVLIGRNLDKDI 220
            W D  ER N+L     ++D+ I
Sbjct: 2735 WNDYVERKNQLEQWMESVDQKI 2756


>gi|50658069 phosphodiesterase 4D interacting protein isoform 2
           [Homo sapiens]
          Length = 969

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 11/214 (5%)

Query: 13  YLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTI 72
           YL G  +++          E  P G + + T Q ++      + T L  +EDV   R+T+
Sbjct: 683 YLGGRDSLMSQAPISNQQAEVTPTGCLGKQTDQGSMQIPSRDDSTSLTAKEDVSIPRSTL 742

Query: 73  RSIN---GLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTI 129
             ++   GL + L   +  ++L    +  +   LS +     +Q         D   +T 
Sbjct: 743 GDLDTVAGLEKELSNAKEELELMAKKERESQMELSALQSMMAVQEEELQVQAADMESLTR 802

Query: 130 TFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLV-SIKDKSQQVIVQGVHE 188
             ++    KE+ +      L+  +++   +    EV+ L+  V S++ + Q++      +
Sbjct: 803 NIQI----KEDLIKDLQMQLVDPEDIPAMERLTQEVLLLREKVASVESQGQEISGNRRQQ 858

Query: 189 LYDLEETPVSWKDDTERTNRLVLIGRNLDKDILK 222
           L  + E  V   D+  R N  +   R L   ++K
Sbjct: 859 LLLMLEGLV---DERSRLNEALQAERQLYSSLVK 889


>gi|50658071 phosphodiesterase 4D interacting protein isoform 5 [Homo
            sapiens]
          Length = 1132

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 11/214 (5%)

Query: 13   YLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTI 72
            YL G  +++          E  P G + + T Q ++      + T L  +EDV   R+T+
Sbjct: 846  YLGGRDSLMSQAPISNQQAEVTPTGCLGKQTDQGSMQIPSRDDSTSLTAKEDVSIPRSTL 905

Query: 73   RSIN---GLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTI 129
              ++   GL + L   +  ++L    +  +   LS +     +Q         D   +T 
Sbjct: 906  GDLDTVAGLEKELSNAKEELELMAKKERESQMELSALQSMMAVQEEELQVQAADMESLTR 965

Query: 130  TFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLV-SIKDKSQQVIVQGVHE 188
              ++    KE+ +      L+  +++   +    EV+ L+  V S++ + Q++      +
Sbjct: 966  NIQI----KEDLIKDLQMQLVDPEDIPAMERLTQEVLLLREKVASVESQGQEISGNRRQQ 1021

Query: 189  LYDLEETPVSWKDDTERTNRLVLIGRNLDKDILK 222
            L  + E  V   D+  R N  +   R L   ++K
Sbjct: 1022 LLLMLEGLV---DERSRLNEALQAERQLYSSLVK 1052


>gi|157311604 phosphodiesterase 4D interacting protein isoform 1
           [Homo sapiens]
          Length = 2346

 Score = 28.5 bits (62), Expect = 5.6
 Identities = 42/214 (19%), Positives = 86/214 (40%), Gaps = 11/214 (5%)

Query: 13  YLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTI 72
           YL G  +++          E  P G + + T Q ++      + T L  +EDV   R+T+
Sbjct: 683 YLGGRDSLMSQAPISNQQAEVTPTGCLGKQTDQGSMQIPSRDDSTSLTAKEDVSIPRSTL 742

Query: 73  RSIN---GLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQPHLDQSIVTI 129
             ++   GL + L   +  ++L    +  +   LS +     +Q         D   +T 
Sbjct: 743 GDLDTVAGLEKELSNAKEELELMAKKERESQMELSALQSMMAVQEEELQVQAADMESLTR 802

Query: 130 TFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCMEVIRLKGLV-SIKDKSQQVIVQGVHE 188
             ++    KE+ +      L+  +++   +    EV+ L+  V S++ + Q++      +
Sbjct: 803 NIQI----KEDLIKDLQMQLVDPEDIPAMERLTQEVLLLREKVASVESQGQEISGNRRQQ 858

Query: 189 LYDLEETPVSWKDDTERTNRLVLIGRNLDKDILK 222
           L  + E  V   D+  R N  +   R L   ++K
Sbjct: 859 LLLMLEGLV---DERSRLNEALQAERQLYSSLVK 889


>gi|224831239 integrin alpha M isoform 1 precursor [Homo sapiens]
          Length = 1153

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 14/73 (19%)

Query: 58  DLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLS---------NVLDLHAFDSLSGI-- 106
           D++PE D + +   IR + G+G    +++SR +L+         +V  ++ F++L  I  
Sbjct: 270 DVIPEADREGV---IRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQN 326

Query: 107 SLQKKLQHVPGTQ 119
            L++K+  + GTQ
Sbjct: 327 QLREKIFAIEGTQ 339


>gi|88501734 integrin alpha M isoform 2 precursor [Homo sapiens]
          Length = 1152

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 14/73 (19%)

Query: 58  DLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLS---------NVLDLHAFDSLSGI-- 106
           D++PE D + +   IR + G+G    +++SR +L+         +V  ++ F++L  I  
Sbjct: 270 DVIPEADREGV---IRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKTIQN 326

Query: 107 SLQKKLQHVPGTQ 119
            L++K+  + GTQ
Sbjct: 327 QLREKIFAIEGTQ 339


>gi|126032338 ryanodine receptor 3 [Homo sapiens]
          Length = 4870

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)

Query: 22   DSKYGLKHLTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSI 75
            DS Y L+   EE+ DG +  A+        +  N TD +    +K LR   R++
Sbjct: 4119 DSSYVLEIAGEEEEDGSLEPASAFAMACASVKRNVTDFLKRATLKNLRKQYRNV 4172


>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
          Length = 1184

 Score = 28.1 bits (61), Expect = 7.4
 Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 5/106 (4%)

Query: 30   LTEEKPDGLINEATRQVALADIILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRV 89
            + +   +G+ N+   +    +I  +N+++   E D+ KLRT I ++    + +E +   +
Sbjct: 1049 IKQRASNGIENDEEIKQLDEEIKELNESNSQMEADMIKLRTQITTMESNLKTIEEENKVI 1108

Query: 90   DLSNVLDLHAFDSLSGISLQK----KLQHV-PGTQPHLDQSIVTIT 130
            +  N   LH   +LS   +      +L H+ P  + + D  + T+T
Sbjct: 1109 EQQNESLLHELANLSQSLIHSLANIQLPHMDPINEQNFDAYVTTLT 1154


>gi|239753333 PREDICTED: actin, beta-like 3 [Homo sapiens]
          Length = 924

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)

Query: 51  IILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLS-GISLQ 109
           I+++  TD+   +  K+    + S NG  ++++    R    NVLD     +L+  +  Q
Sbjct: 121 IVMLRDTDVNKRDKQKRTALHLASANGNSEVVKLVLDRRCQLNVLDNKKRTALTKAVQCQ 180

Query: 110 KK------LQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCM 163
           +       L+H  GT P++       T         E   M    LL+  ++ +K+ H +
Sbjct: 181 EDECALMLLEH--GTDPNIPDEYGNTTLHYA--VYNEDKLMAKALLLYGADIESKNKHGL 236

Query: 164 EVIRLKGLVSIKDKSQQVI 182
             +    L+ I ++ QQV+
Sbjct: 237 TPL----LLGIHEQKQQVV 251


>gi|239747898 PREDICTED: actin, beta-like 3 [Homo sapiens]
          Length = 924

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)

Query: 51  IILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLS-GISLQ 109
           I+++  TD+   +  K+    + S NG  ++++    R    NVLD     +L+  +  Q
Sbjct: 121 IVMLRDTDVNKRDKQKRTALHLASANGNSEVVKLVLDRRCQLNVLDNKKRTALTKAVQCQ 180

Query: 110 KK------LQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCM 163
           +       L+H  GT P++       T         E   M    LL+  ++ +K+ H +
Sbjct: 181 EDECALMLLEH--GTDPNIPDEYGNTTLHYA--VYNEDKLMAKALLLYGADIESKNKHGL 236

Query: 164 EVIRLKGLVSIKDKSQQVI 182
             +    L+ I ++ QQV+
Sbjct: 237 TPL----LLGIHEQKQQVV 251


>gi|239741786 PREDICTED: kappa-actin [Homo sapiens]
          Length = 924

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 31/139 (22%), Positives = 60/139 (43%), Gaps = 15/139 (10%)

Query: 51  IILINKTDLVPEEDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLS-GISLQ 109
           I+++  TD+   +  K+    + S NG  ++++    R    NVLD     +L+  +  Q
Sbjct: 121 IVMLRDTDVNKRDKQKRTALHLASANGNSEVVKLVLDRRCQLNVLDNKKRTALTKAVQCQ 180

Query: 110 KK------LQHVPGTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLLWEKNVRNKDNHCM 163
           +       L+H  GT P++       T         E   M    LL+  ++ +K+ H +
Sbjct: 181 EDECALMLLEH--GTDPNIPDEYGNTTLHYA--VYNEDKLMAKALLLYGADIESKNKHGL 236

Query: 164 EVIRLKGLVSIKDKSQQVI 182
             +    L+ I ++ QQV+
Sbjct: 237 TPL----LLGIHEQKQQVV 251


>gi|93141049 collagen, type XII, alpha 1 short isoform precursor
           [Homo sapiens]
          Length = 1899

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 93  NVLDLHAFDSLSGISLQKKLQHVP--GTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLL 150
           N LD+  +D   G  LQ ++ + P  GT+P   +SIV     VPGN +  HL   I + L
Sbjct: 784 NSLDVR-WDPAPGPVLQYRVVYSPVDGTRP--SESIV-----VPGNTRMVHLERLIPDTL 835

Query: 151 WEKNV 155
           +  N+
Sbjct: 836 YSVNL 840


>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
            sapiens]
          Length = 3063

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 93   NVLDLHAFDSLSGISLQKKLQHVP--GTQPHLDQSIVTITFEVPGNAKEEHLNMFIQNLL 150
            N LD+  +D   G  LQ ++ + P  GT+P   +SIV     VPGN +  HL   I + L
Sbjct: 1948 NSLDVR-WDPAPGPVLQYRVVYSPVDGTRP--SESIV-----VPGNTRMVHLERLIPDTL 1999

Query: 151  WEKNV 155
            +  N+
Sbjct: 2000 YSVNL 2004


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,862,281
Number of Sequences: 37866
Number of extensions: 358879
Number of successful extensions: 784
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 38
length of query: 247
length of database: 18,247,518
effective HSP length: 100
effective length of query: 147
effective length of database: 14,460,918
effective search space: 2125754946
effective search space used: 2125754946
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.