Guide to the Human Genome
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Name: EFTUD2 Sequence: fasta or formatted (937aa) NCBI GI: 217272894
Description:

elongation factor Tu GTP binding domain containing 2 isoform b

Referenced in:

Capping and Splicing
Translation Factors

Other entries for this name:
alt prot [972aa] elongation factor Tu GTP binding domain containing 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         47           2
 C cysteine            1.8         17           1
 D aspartate           7.7         72           8
 E glutamate           7.3         68           2
 F phenylalanine       4.4         41           2
 G glycine             6.0         56           3
 H histidine           2.7         25           2
 I isoleucine          6.5         61           2
 K lysine              6.2         58           2
 L leucine             9.3         87           2
 M methionine          2.2         21           1
 N asparagine          2.8         26           1
 P proline             6.1         57           2
 Q glutamine           3.2         30           1
 R arginine            4.3         40           3
 S serine              5.0         47           3
 T threonine           7.0         66           2
 V valine              8.6         81           2
 W tryptophan          0.9          8           1
 Y tyrosine            3.1         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   elongation factor Tu GTP binding domain containing ... 
EFTUD2                1.000   elongation factor Tu GTP binding domain containing ...
EEF2                  0.324   eukaryotic translation elongation factor 2 
EFTUD1                0.079   elongation factor Tu GTP binding domain containing 1...
EFTUD1                0.075   elongation factor Tu GTP binding domain containing 1...
GUF1                  0.034   GUF1 GTPase homolog 
LOC727963             0.031   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.031   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.031   PREDICTED: similar to elongation factor Tu GTP bind...
GFM2                  0.024   mitochondrial elongation factor G2 isoform 2 
GFM2                  0.024   mitochondrial elongation factor G2 isoform 3 
GFM2                  0.024   mitochondrial elongation factor G2 isoform 1 
GFM1                  0.023   G elongation factor, mitochondrial 1 
MTIF2                 0.016   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.016   mitochondrial translational initiation factor 2 prec...
EIF5B                 0.012   eukaryotic translation initiation factor 5B 
HBS1L                 0.008   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.008   Hsp70 subfamily B suppressor 1-like protein isoform 1...
TUFM                  0.008   Tu translation elongation factor, mitochondrial prec...
LOC100293909          0.005   PREDICTED: similar to eukaryotic translation elonga...
EEF1A1                0.005   eukaryotic translation elongation factor 1 alpha 1 [H...
EEF1A2                0.005   eukaryotic translation elongation factor 1 alpha 2 [H...
GSPT2                 0.005   peptide chain release factor 3 
GSPT1                 0.005   G1 to S phase transition 1 isoform 3 
GSPT1                 0.005   G1 to S phase transition 1 isoform 2 
GSPT1                 0.005   G1 to S phase transition 1 isoform 1 
CD3EAP                0.004   CD3E antigen, epsilon polypeptide associated protein ...
ATAD2                 0.004   ATPase family, AAA domain containing 2 
EEFSEC                0.004   eukaryotic elongation factor, selenocysteine-tRNA-sp...
GPT                   0.004   glutamic pyruvate transaminase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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