Guide to the Human Genome
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Name: EFTUD2 Sequence: fasta or formatted (972aa) NCBI GI: 217272892
Description:

elongation factor Tu GTP binding domain containing 2 isoform a

Referenced in:

Capping and Splicing
Translation Factors

Other entries for this name:
alt prot [937aa] elongation factor Tu GTP binding domain containing 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         47           2
 C cysteine            1.7         17           1
 D aspartate           8.4         82           8
 E glutamate           7.6         74           2
 F phenylalanine       4.3         42           2
 G glycine             6.1         59           3
 H histidine           2.6         25           2
 I isoleucine          6.4         62           2
 K lysine              6.1         59           2
 L leucine             9.4         91           2
 M methionine          2.3         22           1
 N asparagine          2.8         27           1
 P proline             6.0         58           2
 Q glutamine           3.1         30           1
 R arginine            4.2         41           3
 S serine              4.9         48           3
 T threonine           7.0         68           2
 V valine              8.3         81           2
 W tryptophan          0.8          8           1
 Y tyrosine            3.2         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   elongation factor Tu GTP binding domain containing ... 
EFTUD2                0.963   elongation factor Tu GTP binding domain containing ...
EEF2                  0.312   eukaryotic translation elongation factor 2 
EFTUD1                0.076   elongation factor Tu GTP binding domain containing 1...
EFTUD1                0.072   elongation factor Tu GTP binding domain containing 1...
GUF1                  0.032   GUF1 GTPase homolog 
LOC727963             0.030   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.030   PREDICTED: similar to elongation factor Tu GTP bind...
LOC727963             0.030   PREDICTED: similar to elongation factor Tu GTP bind...
GFM2                  0.023   mitochondrial elongation factor G2 isoform 2 
GFM2                  0.023   mitochondrial elongation factor G2 isoform 3 
GFM2                  0.023   mitochondrial elongation factor G2 isoform 1 
GFM1                  0.022   G elongation factor, mitochondrial 1 
MTIF2                 0.015   mitochondrial translational initiation factor 2 prec...
MTIF2                 0.015   mitochondrial translational initiation factor 2 prec...
EIF5B                 0.014   eukaryotic translation initiation factor 5B 
HUWE1                 0.009   HECT, UBA and WWE domain containing 1 
MTERFD2               0.009   MTERF domain containing 2 
ATAD2                 0.009   ATPase family, AAA domain containing 2 
MYT1L                 0.008   myelin transcription factor 1-like 
HBS1L                 0.008   Hsp70 subfamily B suppressor 1-like protein isoform...
HBS1L                 0.008   Hsp70 subfamily B suppressor 1-like protein isoform 1...
TUFM                  0.008   Tu translation elongation factor, mitochondrial prec...
TPR                   0.007   nuclear pore complex-associated protein TPR 
VPRBP                 0.007   HIV-1 Vpr binding protein 
LOC646817             0.007   PREDICTED: similar to SET translocation 
LOC646817             0.007   PREDICTED: similar to SET translocation 
LOC646817             0.007   PREDICTED: similar to SET translocation 
ZBTB7C                0.007   zinc finger and BTB domain containing 7C 
NCL                   0.006   nucleolin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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