Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HECW1 Sequence: fasta or formatted (1606aa) NCBI GI: 94536811
Description:

NEDD4-like ubiquitin-protein ligase 1

Referenced in:

Ubiquitin and Related Protein Modifications
WW Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5        104           3
 C cysteine            1.5         24           2
 D aspartate           5.0         80           2
 E glutamate           9.2        147           4
 F phenylalanine       4.1         66           3
 G glycine             7.0        112           7
 H histidine           3.1         50           3
 I isoleucine          4.2         68           2
 K lysine              3.4         54           2
 L leucine             8.8        141           3
 M methionine          1.5         24           1
 N asparagine          3.7         60           2
 P proline             5.9         95           2
 Q glutamine           4.7         75           2
 R arginine            6.9        111           3
 S serine             11.0        176           3
 T threonine           4.7         76           3
 V valine              4.8         77           2
 W tryptophan          1.0         16           1
 Y tyrosine            3.1         50           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NEDD4-like ubiquitin-protein ligase 1 
HECW2                 0.512   HECT, C2 and WW domain containing E3 ubiquitin prote...
NEDD4                 0.131   neural precursor cell expressed, developmentally do...
NEDD4                 0.131   neural precursor cell expressed, developmentally do...
NEDD4L                0.110   neural precursor cell expressed, developmentally do...
NEDD4L                0.110   neural precursor cell expressed, developmentally dow...
NEDD4L                0.110   neural precursor cell expressed, developmentally do...
NEDD4L                0.110   neural precursor cell expressed, developmentally do...
NEDD4L                0.110   neural precursor cell expressed, developmentally do...
NEDD4L                0.110   neural precursor cell expressed, developmentally do...
NEDD4L                0.110   neural precursor cell expressed, developmentally do...
NEDD4L                0.110   neural precursor cell expressed, developmentally do...
NEDD4L                0.110   neural precursor cell expressed, developmentally do...
WWP1                  0.110   WW domain containing E3 ubiquitin protein ligase 1 [...
ITCH                  0.109   itchy homolog E3 ubiquitin protein ligase 
WWP2                  0.106   WW domain containing E3 ubiquitin protein ligase 2 i...
SMURF1                0.104   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF1                0.104   Smad ubiquitination regulatory factor 1 isoform 2 [H...
WWP2                  0.104   WW domain containing E3 ubiquitin protein ligase 2 i...
SMURF2                0.104   SMAD specific E3 ubiquitin protein ligase 2 
HUWE1                 0.087   HECT, UBA and WWE domain containing 1 
HACE1                 0.076   HECT domain and ankyrin repeat containing, E3 ubiqu...
UBE3A                 0.050   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.050   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.050   ubiquitin protein ligase E3A isoform 2 
KIAA0317              0.049   hypothetical protein LOC9870 
HECTD2                0.048   HECT domain containing 2 isoform a 
HERC4                 0.047   hect domain and RLD 4 isoform b 
HERC4                 0.047   hect domain and RLD 4 isoform a 
UBE3B                 0.047   ubiquitin protein ligase E3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press