Guide to the Human Genome
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Name: UBE3A Sequence: fasta or formatted (852aa) NCBI GI: 19718762
Description:

ubiquitin protein ligase E3A isoform 1

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [872aa] ubiquitin protein ligase E3A isoform 3
alt prot [875aa] ubiquitin protein ligase E3A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         46           3
 C cysteine            1.9         16           1
 D aspartate           6.2         53           3
 E glutamate           9.9         84           2
 F phenylalanine       4.9         42           2
 G glycine             4.9         42           2
 H histidine           1.5         13           1
 I isoleucine          5.4         46           2
 K lysine              7.4         63           2
 L leucine            10.8         92           3
 M methionine          2.9         25           2
 N asparagine          6.0         51           2
 P proline             3.9         33           1
 Q glutamine           2.9         25           2
 R arginine            5.2         44           2
 S serine              5.9         50           3
 T threonine           4.7         40           2
 V valine              5.5         47           2
 W tryptophan          0.4          3           1
 Y tyrosine            4.3         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin protein ligase E3A isoform 1 
UBE3A                 1.000   ubiquitin protein ligase E3A isoform 3 
UBE3A                 1.000   ubiquitin protein ligase E3A isoform 2 
HECTD2                0.191   HECT domain containing 2 isoform a 
HERC4                 0.164   hect domain and RLD 4 isoform b 
HERC4                 0.162   hect domain and RLD 4 isoform a 
HERC3                 0.151   hect domain and RLD 3 
HERC5                 0.122   hect domain and RLD 5 
HERC6                 0.119   hect domain and RLD 6 
WWP2                  0.112   WW domain containing E3 ubiquitin protein ligase 2 i...
WWP2                  0.112   WW domain containing E3 ubiquitin protein ligase 2 i...
NEDD4L                0.106   neural precursor cell expressed, developmentally do...
NEDD4L                0.106   neural precursor cell expressed, developmentally dow...
NEDD4L                0.106   neural precursor cell expressed, developmentally do...
NEDD4L                0.106   neural precursor cell expressed, developmentally do...
NEDD4L                0.106   neural precursor cell expressed, developmentally do...
NEDD4L                0.106   neural precursor cell expressed, developmentally do...
NEDD4L                0.106   neural precursor cell expressed, developmentally do...
NEDD4L                0.106   neural precursor cell expressed, developmentally do...
NEDD4L                0.106   neural precursor cell expressed, developmentally do...
HUWE1                 0.106   HECT, UBA and WWE domain containing 1 
WWP1                  0.104   WW domain containing E3 ubiquitin protein ligase 1 [...
NEDD4                 0.104   neural precursor cell expressed, developmentally do...
NEDD4                 0.104   neural precursor cell expressed, developmentally do...
ITCH                  0.104   itchy homolog E3 ubiquitin protein ligase 
SMURF1                0.102   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF1                0.102   Smad ubiquitination regulatory factor 1 isoform 2 [H...
UBE3C                 0.102   ubiquitin protein ligase E3C 
SMURF2                0.100   SMAD specific E3 ubiquitin protein ligase 2 
HACE1                 0.099   HECT domain and ankyrin repeat containing, E3 ubiqu...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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