Guide to the Human Genome
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Name: SMURF1 Sequence: fasta or formatted (731aa) NCBI GI: 31317290
Description:

Smad ubiquitination regulatory factor 1 isoform 2

Referenced in:

Ubiquitin and Related Protein Modifications
WW Domain

Other entries for this name:
alt prot [757aa] Smad ubiquitination regulatory factor 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8         28           3
 C cysteine            2.1         15           1
 D aspartate           5.7         42           1
 E glutamate           6.6         48           2
 F phenylalanine       4.1         30           2
 G glycine             7.4         54           3
 H histidine           3.7         27           2
 I isoleucine          4.7         34           2
 K lysine              5.2         38           2
 L leucine            10.7         78           2
 M methionine          1.4         10           1
 N asparagine          4.8         35           2
 P proline             6.0         44           2
 Q glutamine           5.5         40           2
 R arginine            6.7         49           2
 S serine              5.6         41           2
 T threonine           5.3         39           2
 V valine              6.2         45           2
 W tryptophan          1.4         10           1
 Y tyrosine            3.3         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Smad ubiquitination regulatory factor 1 isoform 2 [H... 
SMURF1                0.991   Smad ubiquitination regulatory factor 1 isoform 1 [H...
SMURF2                0.761   SMAD specific E3 ubiquitin protein ligase 2 
ITCH                  0.300   itchy homolog E3 ubiquitin protein ligase 
NEDD4L                0.293   neural precursor cell expressed, developmentally do...
NEDD4L                0.293   neural precursor cell expressed, developmentally dow...
NEDD4L                0.293   neural precursor cell expressed, developmentally do...
NEDD4L                0.293   neural precursor cell expressed, developmentally do...
NEDD4L                0.293   neural precursor cell expressed, developmentally do...
NEDD4L                0.293   neural precursor cell expressed, developmentally do...
NEDD4L                0.293   neural precursor cell expressed, developmentally do...
NEDD4L                0.293   neural precursor cell expressed, developmentally do...
NEDD4L                0.293   neural precursor cell expressed, developmentally do...
WWP1                  0.286   WW domain containing E3 ubiquitin protein ligase 1 [...
WWP2                  0.285   WW domain containing E3 ubiquitin protein ligase 2 i...
NEDD4                 0.284   neural precursor cell expressed, developmentally do...
NEDD4                 0.284   neural precursor cell expressed, developmentally do...
WWP2                  0.271   WW domain containing E3 ubiquitin protein ligase 2 i...
HECW1                 0.225   NEDD4-like ubiquitin-protein ligase 1 
HECW2                 0.225   HECT, C2 and WW domain containing E3 ubiquitin prote...
HUWE1                 0.204   HECT, UBA and WWE domain containing 1 
HACE1                 0.166   HECT domain and ankyrin repeat containing, E3 ubiqu...
UBE3A                 0.115   ubiquitin protein ligase E3A isoform 3 
UBE3A                 0.115   ubiquitin protein ligase E3A isoform 1 
UBE3A                 0.115   ubiquitin protein ligase E3A isoform 2 
HECTD2                0.112   HECT domain containing 2 isoform a 
KIAA0317              0.109   hypothetical protein LOC9870 
UBE3C                 0.101   ubiquitin protein ligase E3C 
HERC4                 0.101   hect domain and RLD 4 isoform b 
HERC4                 0.101   hect domain and RLD 4 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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